-
Global information
- Generated on Fri Feb 23 11:04:53 2024
- Log file: /project/archive/log/postgres/dbdev51/postgresql.log.1
- Parsed 17,697 log entries in 14s
- Log start from 2024-02-07 00:00:50 to 2024-02-07 23:52:15
-
Overview
Global Stats
- 24 Number of unique normalized queries
- 141 Number of queries
- 1h27m31s Total query duration
- 2024-02-07 05:45:12 First query
- 2024-02-07 17:12:29 Last query
- 2 queries/s at 2024-02-07 17:11:45 Query peak
- 1h27m31s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 1h27m31s Execute total duration
- 62 Number of events
- 7 Number of unique normalized events
- 21 Max number of times the same event was reported
- 0 Number of cancellation
- 0 Total number of automatic vacuums
- 0 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 2,137 Total number of sessions
- 51 sessions at 2024-02-07 09:58:46 Session peak
- 42d9h39m57s Total duration of sessions
- 28m34s Average duration of sessions
- 0 Average queries per session
- 2s457ms Average queries duration per session
- 28m31s Average idle time per session
- 2,134 Total number of connections
- 9 connections/s at 2024-02-07 14:37:20 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 2 queries/s Query Peak
- 2024-02-07 17:11:45 Date
SELECT Traffic
Key values
- 2 queries/s Query Peak
- 2024-02-07 17:11:45 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2024-02-07 05:45:12 Date
Queries duration
Key values
- 1h27m31s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 07 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 24 0ms 15s331ms 2s769ms 15s331ms 19s175ms 27s662ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 24 0ms 4m28s 1m16s 3m12s 3m39s 7m10s 10 17 0ms 2m54s 1m20s 2m54s 4m 5m3s 11 28 0ms 2m49s 48s85ms 2m39s 2m56s 3m35s 12 11 0ms 2m39s 45s164ms 1m59s 2m39s 3m2s 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 30 0ms 8s240ms 3s658ms 9s577ms 10s281ms 19s649ms 15 2 0ms 4s663ms 3s967ms 0ms 7s934ms 7s934ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 5 0ms 3s907ms 3s369ms 0ms 6s876ms 9s972ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 07 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 22 0 2s825ms 0ms 15s331ms 27s662ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 24 0 1m16s 2m12s 3m12s 7m10s 10 17 0 1m20s 1m8s 2m54s 5m3s 11 28 0 48s85ms 1m25s 2m39s 3m35s 12 11 0 45s164ms 9s183ms 1m59s 3m2s 13 0 0 0ms 0ms 0ms 0ms 14 30 0 3s658ms 9s403ms 9s577ms 19s649ms 15 2 0 3s967ms 0ms 0ms 7s934ms 16 0 0 0ms 0ms 0ms 0ms 17 5 0 3s369ms 0ms 0ms 9s972ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 07 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Feb 07 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 24 24.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 24 24.00 0.00% 10 0 17 17.00 0.00% 11 0 28 28.00 0.00% 12 0 11 11.00 0.00% 13 0 0 0.00 0.00% 14 0 30 30.00 0.00% 15 0 2 2.00 0.00% 16 0 0 0.00 0.00% 17 0 5 5.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Feb 07 00 80 0.02/s 01 80 0.02/s 02 80 0.02/s 03 80 0.02/s 04 77 0.02/s 05 86 0.02/s 06 77 0.02/s 07 80 0.02/s 08 80 0.02/s 09 133 0.04/s 10 99 0.03/s 11 103 0.03/s 12 97 0.03/s 13 78 0.02/s 14 173 0.05/s 15 81 0.02/s 16 77 0.02/s 17 94 0.03/s 18 79 0.02/s 19 80 0.02/s 20 80 0.02/s 21 80 0.02/s 22 80 0.02/s 23 80 0.02/s Day Hour Count Average Duration Average idle time Feb 07 00 80 30m39s 30m39s 01 83 53m57s 53m57s 02 80 30m40s 30m40s 03 80 30m39s 30m39s 04 77 30m40s 30m40s 05 86 28m24s 28m24s 06 77 30m37s 30m37s 07 80 30m41s 30m41s 08 80 30m40s 30m40s 09 121 24m7s 23m52s 10 105 26m49s 26m36s 11 103 21m22s 21m9s 12 103 25m5s 25m 13 78 30m38s 30m38s 14 173 14m15s 14m14s 15 81 28m58s 28m57s 16 77 30m39s 30m39s 17 94 25m17s 25m16s 18 79 30m38s 30m38s 19 80 30m40s 30m40s 20 80 30m39s 30m39s 21 80 30m40s 30m40s 22 80 30m40s 30m40s 23 80 30m39s 30m39s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2024-02-07 14:37:20 Date
Connections per database
Key values
- ctddev51 Main Database
- 2,134 connections Total
Connections per user
Key values
- editeu Main User
- 2,134 connections Total
-
Sessions
Simultaneous sessions
Key values
- 51 sessions Session Peak
- 2024-02-07 09:58:46 Date
Histogram of session times
Key values
- 1,862 1800000-3600000ms duration
Sessions per database
Key values
- ctddev51 Main Database
- 2,137 sessions Total
Sessions per user
Key values
- editeu Main User
- 2,137 sessions Total
Sessions per host
Key values
- 10.12.5.56 Main Host
- 2,137 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 183 buffers Checkpoint Peak
- 2024-02-07 12:33:42 Date
- 18.459 seconds Highest write time
- 0.001 seconds Sync time
Checkpoints Wal files
Key values
- 1 files Wal files usage Peak
- 2024-02-07 12:33:42 Date
Checkpoints distance
Key values
- 3.39 Mo Distance Peak
- 2024-02-07 12:33:42 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Feb 07 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 65 6.593s 0.001s 6.609s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 183 18.459s 0.001s 18.523s 13 0 0s 0s 0s 14 4 0.574s 0.001s 0.592s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Day Hour Added Removed Recycled Synced files Longest sync Average sync Feb 07 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 7 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 1 71 0.001s 0.001s 13 0 0 0 0 0s 0s 14 0 0 0 4 0.001s 0.001s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Day Hour Count Avg time (sec) Feb 07 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Feb 07 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 421.00 kB 753.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 1,738.00 kB 1,738.00 kB 13 0.00 kB 0.00 kB 14 10.00 kB 1,565.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Feb 07 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Autovacuum actions (5 minutes period)
NO DATASET
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Average Autovacuum Duration (5 minutes average)
NO DATASET
Analyzes per table
Key values
- unknown (0) Main table analyzed (database )
- 0 analyzes Total
Vacuums per table
Key values
- unknown (0) Main table vacuumed on database
- 0 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Feb 07 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 139 Total read queries
- 2 Total write queries
Queries by database
Key values
- ctddev51 Main database
- 112 Requests
- 1h17m42s (ctddev51)
- Main time consuming database
Queries by user
Key values
- editeu Main user
- 262 Requests
User Request type Count Duration editeu Total 262 2h48m26s select 262 2h48m26s pubeu Total 50 1m47s cte 10 34s565ms select 40 1m13s unknown Total 226 19m20s cte 6 6s204ms select 220 19m14s Duration by user
Key values
- 2h48m26s (editeu) Main time consuming user
User Request type Count Duration editeu Total 262 2h48m26s select 262 2h48m26s pubeu Total 50 1m47s cte 10 34s565ms select 40 1m13s unknown Total 226 19m20s cte 6 6s204ms select 220 19m14s Queries by host
Key values
- unknown Main host
- 538 Requests
- 3h9m34s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 141 Requests
- 1h27m31s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-02-07 19:47:14 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 81 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 4m28s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 09:27:20 - Database: ctddev51 - User: editeu - Bind query: yes ]
2 3m30s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 09:28:14 - Bind query: yes ]
3 2m56s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 09:25:49 - Database: ctddev51 - User: editeu - Bind query: yes ]
4 2m54s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 10:10:35 - Database: ctddev51 - User: editeu - Bind query: yes ]
5 2m50s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 10:01:36 - Database: ctddev51 - User: editeu - Bind query: yes ]
6 2m49s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 11:26:32 - Database: ctddev51 - User: editeu - Bind query: yes ]
7 2m42s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 09:27:26 - Bind query: yes ]
8 2m39s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 12:06:14 - Database: ctddev51 - User: editeu - Bind query: yes ]
9 2m39s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 11:08:13 - Database: ctddev51 - User: editeu - Bind query: yes ]
10 2m34s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 10:58:42 - Database: ctddev51 - User: editeu - Bind query: yes ]
11 2m28s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 11:14:31 - Database: ctddev51 - User: editeu - Bind query: yes ]
12 2m12s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;[ Date: 2024-02-07 09:45:12 - Database: ctddev51 - User: editeu - Bind query: yes ]
13 2m10s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 10:00:57 - Database: ctddev51 - User: editeu - Bind query: yes ]
14 2m7s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 11:25:49 - Database: ctddev51 - User: editeu - Bind query: yes ]
15 2m1s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 10:09:42 - Database: ctddev51 - User: editeu - Bind query: yes ]
16 1m59s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 12:05:34 - Database: ctddev51 - User: editeu - Bind query: yes ]
17 1m49s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 11:13:51 - Database: ctddev51 - User: editeu - Bind query: yes ]
18 1m47s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 11:07:21 - Database: ctddev51 - User: editeu - Bind query: yes ]
19 1m45s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 2 and t.id = l.TERM_ID;[ Date: 2024-02-07 09:26:30 - Bind query: yes ]
20 1m43s select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;[ Date: 2024-02-07 10:57:50 - Database: ctddev51 - User: editeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1h26m13s 111 1s31ms 4m28s 46s608ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub1.term t, pub1.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 07 09 24 30m44s 1m16s 10 17 22m43s 1m20s 11 23 22m17s 58s163ms 12 11 8m16s 45s164ms 14 30 1m49s 3s658ms 15 2 7s934ms 3s967ms 17 4 13s677ms 3s419ms [ User: editeu - Total duration: 1h17m32s - Times executed: 107 ]
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-02-07 09:27:20 Duration: 4m28s Database: ctddev51 User: editeu Bind query: yes
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-02-07 09:28:14 Duration: 3m30s Bind query: yes
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2024-02-07 09:25:49 Duration: 2m56s Database: ctddev51 User: editeu Bind query: yes
2 15s331ms 1 15s331ms 15s331ms 15s331ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and chemterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and geneterm.id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?)))) and diseaseterm.id = any (array ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 07 05 1 15s331ms 15s331ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and chemTerm.id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and geneTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5)))) and diseaseTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'NECROSIS'))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-02-07 05:49:13 Duration: 15s331ms Bind query: yes
3 8s546ms 4 1s878ms 2s254ms 2s136ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) order by r.sort_txt limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 07 05 4 8s546ms 2s136ms -
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:48:06 Duration: 2s254ms Bind query: yes
-
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:48:03 Duration: 2s212ms Bind query: yes
-
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1275443')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:47:53 Duration: 2s201ms Bind query: yes
4 5s881ms 1 5s881ms 5s881ms 5s881ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 07 05 1 5s881ms 5s881ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-02-07 05:48:54 Duration: 5s881ms Bind query: yes
5 5s735ms 1 5s735ms 5s735ms 5s735ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 07 05 1 5s735ms 5s735ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-02-07 05:48:48 Duration: 5s735ms Bind query: yes
6 4s423ms 3 1s467ms 1s488ms 1s474ms select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where upper(a.object_nm) <> upper(t.nm) union select distinct ? as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where upper(a.anatomy_nm) <> upper(t.nm) union select distinct ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, ? from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id where upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null and anatomy_acc_txt <> ? union select distinct ?, etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, ? from edit.exp_stressor etn left outer join pub1.term t on etn.chem_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_stressor_id = etn.id where upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null and chem_acc_txt <> ? union select distinct ?, etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, ? from edit.exp_outcome etn left outer join pub1.term t on etn.disease_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null and disease_acc_txt <> ? union select distinct ?, etn.phenotype_acc_txt as term_acc_txt, etn.phenotype_term_nm as term_nm, t.nm, ? from edit.exp_outcome etn left outer join pub1.term t on etn.phenotype_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where upper(etn.phenotype_term_nm) <> upper(t.nm) and phenotype_acc_txt is not null and phenotype_acc_txt <> ? union select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, ? from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id where upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null and term_acc_txt <> ? union select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, ? from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id where upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null and etn.exp_marker_acc_txt <> ? union select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, ? from edit.medium etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.term_object_type_id = t.object_type_id inner join edit.object_type o on etn.term_object_type_id = o.id where upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null and etn.term_acc_txt <> ? order by cd, term_nm;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 07 11 3 4s423ms 1s474ms -
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:32:03 Duration: 1s488ms Bind query: yes
-
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:41:00 Duration: 1s467ms Bind query: yes
-
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:43:44 Duration: 1s467ms Bind query: yes
7 4s311ms 2 1s4ms 3s306ms 2s155ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 07 05 2 4s311ms 2s155ms [ User: pubeu - Total duration: 3s306ms - Times executed: 1 ]
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '584887' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-02-07 05:45:12 Duration: 3s306ms Database: ctddev51 User: pubeu Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1414505' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-02-07 05:45:13 Duration: 1s4ms Bind query: yes
8 3s549ms 1 3s549ms 3s549ms 3s549ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 07 05 1 3s549ms 3s549ms [ User: pubeu - Total duration: 3s549ms - Times executed: 1 ]
-
SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-02-07 05:47:18 Duration: 3s549ms Database: ctddev51 User: pubeu Bind query: yes
9 3s396ms 1 3s396ms 3s396ms 3s396ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 07 05 1 3s396ms 3s396ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-02-07 05:47:22 Duration: 3s396ms Bind query: yes
10 3s171ms 1 3s171ms 3s171ms 3s171ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id left outer join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? left outer join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id inner join pub1.db_link dblink on etn.anatomy_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 07 17 1 3s171ms 3s171ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id INNER JOIN pub1.DB_LINK dbLink ON etn.anatomy_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' order by term_nm, term_acc_txt;
Date: 2024-02-07 17:12:29 Duration: 3s171ms Bind query: yes
11 3s162ms 1 3s162ms 3s162ms 3s162ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 07 05 1 3s162ms 3s162ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-02-07 05:47:30 Duration: 3s162ms Bind query: yes
12 3s58ms 1 3s58ms 3s58ms 3s58ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id left outer join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? left outer join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null order by term_nm, term_acc_txt;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 07 11 1 3s58ms 3s58ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null order by term_nm, term_acc_txt;
Date: 2024-02-07 11:41:48 Duration: 3s58ms Bind query: yes
13 3s56ms 2 1s506ms 1s550ms 1s528ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 07 05 2 3s56ms 1s528ms [ User: pubeu - Total duration: 1s550ms - Times executed: 1 ]
-
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-02-07 05:48:10 Duration: 1s550ms Database: ctddev51 User: pubeu Bind query: yes
-
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-02-07 05:48:11 Duration: 1s506ms Bind query: yes
14 2s652ms 1 2s652ms 2s652ms 2s652ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 07 05 1 2s652ms 2s652ms -
SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1275443)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-02-07 05:48:28 Duration: 2s652ms Bind query: yes
15 1s606ms 1 1s606ms 1s606ms 1s606ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 07 05 1 1s606ms 1s606ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-02-07 05:47:25 Duration: 1s606ms Bind query: yes
16 1s351ms 1 1s351ms 1s351ms 1s351ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 07 05 1 1s351ms 1s351ms -
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-02-07 05:47:08 Duration: 1s351ms Bind query: yes
17 1s323ms 1 1s323ms 1s323ms 1s323ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and chemterm.id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 07 05 1 1s323ms 1s323ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and chemTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-02-07 05:48:55 Duration: 1s323ms Bind query: yes
18 1s239ms 1 1s239ms 1s239ms 1s239ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 07 05 1 1s239ms 1s239ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2036477') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2036477') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-02-07 05:48:42 Duration: 1s239ms Bind query: yes
19 1s170ms 1 1s170ms 1s170ms 1s170ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, taxon.nm, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id inner join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where t.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, taxon.nm, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id inner join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where t.nm is null union select o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id inner join pub1.db_link dblink on etn.term_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? where t.nm is null and term_acc_txt is not null and term_acc_txt <> ? union select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, ?, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id inner join pub1.db_link dblink on etn.exp_marker_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? where t.nm is null and exp_marker_acc_txt is not null and exp_marker_acc_txt <> ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 07 11 1 1s170ms 1s170ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, taxon.nm, currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id INNER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE t.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, taxon.nm, currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE t.nm is null UNION select o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, '', -- taxon not Exposure-related currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id INNER JOIN pub1.DB_LINK dbLink ON etn.term_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' WHERE t.nm is null and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, '', -- taxon not Exposure-related currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id INNER JOIN pub1.DB_LINK dbLink ON etn.exp_marker_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' WHERE t.nm is null and exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2024-02-07 11:41:15 Duration: 1s170ms Bind query: yes
20 1s150ms 1 1s150ms 1s150ms 1s150ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 07 05 1 1s150ms 1s150ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1196392') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1196392') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-02-07 05:48:39 Duration: 1s150ms Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 111 1h26m13s 1s31ms 4m28s 46s608ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub1.term t, pub1.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 07 09 24 30m44s 1m16s 10 17 22m43s 1m20s 11 23 22m17s 58s163ms 12 11 8m16s 45s164ms 14 30 1m49s 3s658ms 15 2 7s934ms 3s967ms 17 4 13s677ms 3s419ms [ User: editeu - Total duration: 1h17m32s - Times executed: 107 ]
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-02-07 09:27:20 Duration: 4m28s Database: ctddev51 User: editeu Bind query: yes
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-02-07 09:28:14 Duration: 3m30s Bind query: yes
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2024-02-07 09:25:49 Duration: 2m56s Database: ctddev51 User: editeu Bind query: yes
2 4 8s546ms 1s878ms 2s254ms 2s136ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) order by r.sort_txt limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 07 05 4 8s546ms 2s136ms -
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:48:06 Duration: 2s254ms Bind query: yes
-
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:48:03 Duration: 2s212ms Bind query: yes
-
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1275443')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:47:53 Duration: 2s201ms Bind query: yes
3 3 4s423ms 1s467ms 1s488ms 1s474ms select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where upper(a.object_nm) <> upper(t.nm) union select distinct ? as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where upper(a.anatomy_nm) <> upper(t.nm) union select distinct ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, ? from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id where upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null and anatomy_acc_txt <> ? union select distinct ?, etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, ? from edit.exp_stressor etn left outer join pub1.term t on etn.chem_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_stressor_id = etn.id where upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null and chem_acc_txt <> ? union select distinct ?, etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, ? from edit.exp_outcome etn left outer join pub1.term t on etn.disease_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null and disease_acc_txt <> ? union select distinct ?, etn.phenotype_acc_txt as term_acc_txt, etn.phenotype_term_nm as term_nm, t.nm, ? from edit.exp_outcome etn left outer join pub1.term t on etn.phenotype_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where upper(etn.phenotype_term_nm) <> upper(t.nm) and phenotype_acc_txt is not null and phenotype_acc_txt <> ? union select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, ? from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id where upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null and term_acc_txt <> ? union select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, ? from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id where upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null and etn.exp_marker_acc_txt <> ? union select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, ? from edit.medium etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.term_object_type_id = t.object_type_id inner join edit.object_type o on etn.term_object_type_id = o.id where upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null and etn.term_acc_txt <> ? order by cd, term_nm;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 07 11 3 4s423ms 1s474ms -
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:32:03 Duration: 1s488ms Bind query: yes
-
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:41:00 Duration: 1s467ms Bind query: yes
-
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:43:44 Duration: 1s467ms Bind query: yes
4 2 4s311ms 1s4ms 3s306ms 2s155ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 07 05 2 4s311ms 2s155ms [ User: pubeu - Total duration: 3s306ms - Times executed: 1 ]
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '584887' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-02-07 05:45:12 Duration: 3s306ms Database: ctddev51 User: pubeu Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1414505' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-02-07 05:45:13 Duration: 1s4ms Bind query: yes
5 2 3s56ms 1s506ms 1s550ms 1s528ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 07 05 2 3s56ms 1s528ms [ User: pubeu - Total duration: 1s550ms - Times executed: 1 ]
-
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-02-07 05:48:10 Duration: 1s550ms Database: ctddev51 User: pubeu Bind query: yes
-
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-02-07 05:48:11 Duration: 1s506ms Bind query: yes
6 1 15s331ms 15s331ms 15s331ms 15s331ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and chemterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and geneterm.id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?)))) and diseaseterm.id = any (array ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 07 05 1 15s331ms 15s331ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and chemTerm.id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and geneTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5)))) and diseaseTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'NECROSIS'))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-02-07 05:49:13 Duration: 15s331ms Bind query: yes
7 1 5s881ms 5s881ms 5s881ms 5s881ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 07 05 1 5s881ms 5s881ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-02-07 05:48:54 Duration: 5s881ms Bind query: yes
8 1 5s735ms 5s735ms 5s735ms 5s735ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 07 05 1 5s735ms 5s735ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-02-07 05:48:48 Duration: 5s735ms Bind query: yes
9 1 3s549ms 3s549ms 3s549ms 3s549ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 07 05 1 3s549ms 3s549ms [ User: pubeu - Total duration: 3s549ms - Times executed: 1 ]
-
SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-02-07 05:47:18 Duration: 3s549ms Database: ctddev51 User: pubeu Bind query: yes
10 1 3s396ms 3s396ms 3s396ms 3s396ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 07 05 1 3s396ms 3s396ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-02-07 05:47:22 Duration: 3s396ms Bind query: yes
11 1 3s171ms 3s171ms 3s171ms 3s171ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id left outer join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? left outer join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id inner join pub1.db_link dblink on etn.anatomy_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 07 17 1 3s171ms 3s171ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id INNER JOIN pub1.DB_LINK dbLink ON etn.anatomy_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' order by term_nm, term_acc_txt;
Date: 2024-02-07 17:12:29 Duration: 3s171ms Bind query: yes
12 1 3s162ms 3s162ms 3s162ms 3s162ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 07 05 1 3s162ms 3s162ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-02-07 05:47:30 Duration: 3s162ms Bind query: yes
13 1 3s58ms 3s58ms 3s58ms 3s58ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id left outer join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? left outer join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null order by term_nm, term_acc_txt;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 07 11 1 3s58ms 3s58ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null order by term_nm, term_acc_txt;
Date: 2024-02-07 11:41:48 Duration: 3s58ms Bind query: yes
14 1 2s652ms 2s652ms 2s652ms 2s652ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 07 05 1 2s652ms 2s652ms -
SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1275443)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-02-07 05:48:28 Duration: 2s652ms Bind query: yes
15 1 1s606ms 1s606ms 1s606ms 1s606ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 07 05 1 1s606ms 1s606ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-02-07 05:47:25 Duration: 1s606ms Bind query: yes
16 1 1s351ms 1s351ms 1s351ms 1s351ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 07 05 1 1s351ms 1s351ms -
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-02-07 05:47:08 Duration: 1s351ms Bind query: yes
17 1 1s323ms 1s323ms 1s323ms 1s323ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and chemterm.id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 07 05 1 1s323ms 1s323ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and chemTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-02-07 05:48:55 Duration: 1s323ms Bind query: yes
18 1 1s239ms 1s239ms 1s239ms 1s239ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 07 05 1 1s239ms 1s239ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2036477') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2036477') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-02-07 05:48:42 Duration: 1s239ms Bind query: yes
19 1 1s170ms 1s170ms 1s170ms 1s170ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, taxon.nm, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id inner join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where t.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, taxon.nm, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id inner join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where t.nm is null union select o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id inner join pub1.db_link dblink on etn.term_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? where t.nm is null and term_acc_txt is not null and term_acc_txt <> ? union select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, ?, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id inner join pub1.db_link dblink on etn.exp_marker_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? where t.nm is null and exp_marker_acc_txt is not null and exp_marker_acc_txt <> ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 07 11 1 1s170ms 1s170ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, taxon.nm, currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id INNER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE t.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, taxon.nm, currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE t.nm is null UNION select o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, '', -- taxon not Exposure-related currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id INNER JOIN pub1.DB_LINK dbLink ON etn.term_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' WHERE t.nm is null and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, '', -- taxon not Exposure-related currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id INNER JOIN pub1.DB_LINK dbLink ON etn.exp_marker_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' WHERE t.nm is null and exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2024-02-07 11:41:15 Duration: 1s170ms Bind query: yes
20 1 1s150ms 1s150ms 1s150ms 1s150ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 07 05 1 1s150ms 1s150ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1196392') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1196392') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-02-07 05:48:39 Duration: 1s150ms Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 1s31ms 4m28s 46s608ms 111 1h26m13s select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub1.term t, pub1.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 07 09 24 30m44s 1m16s 10 17 22m43s 1m20s 11 23 22m17s 58s163ms 12 11 8m16s 45s164ms 14 30 1m49s 3s658ms 15 2 7s934ms 3s967ms 17 4 13s677ms 3s419ms [ User: editeu - Total duration: 1h17m32s - Times executed: 107 ]
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-02-07 09:27:20 Duration: 4m28s Database: ctddev51 User: editeu Bind query: yes
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-02-07 09:28:14 Duration: 3m30s Bind query: yes
-
select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;
Date: 2024-02-07 09:25:49 Duration: 2m56s Database: ctddev51 User: editeu Bind query: yes
2 15s331ms 15s331ms 15s331ms 1 15s331ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and chemterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and geneterm.id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?)))) and diseaseterm.id = any (array ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 07 05 1 15s331ms 15s331ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and chemTerm.id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and geneTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5)))) and diseaseTerm.id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper(baseTerm.nm) LIKE 'NECROSIS'))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-02-07 05:49:13 Duration: 15s331ms Bind query: yes
3 5s881ms 5s881ms 5s881ms 1 5s881ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 07 05 1 5s881ms 5s881ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-02-07 05:48:54 Duration: 5s881ms Bind query: yes
4 5s735ms 5s735ms 5s735ms 1 5s735ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 07 05 1 5s735ms 5s735ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-02-07 05:48:48 Duration: 5s735ms Bind query: yes
5 3s549ms 3s549ms 3s549ms 1 3s549ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 07 05 1 3s549ms 3s549ms [ User: pubeu - Total duration: 3s549ms - Times executed: 1 ]
-
SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-02-07 05:47:18 Duration: 3s549ms Database: ctddev51 User: pubeu Bind query: yes
6 3s396ms 3s396ms 3s396ms 1 3s396ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 07 05 1 3s396ms 3s396ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-02-07 05:47:22 Duration: 3s396ms Bind query: yes
7 3s171ms 3s171ms 3s171ms 1 3s171ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id left outer join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? left outer join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id inner join pub1.db_link dblink on etn.anatomy_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 07 17 1 3s171ms 3s171ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id INNER JOIN pub1.DB_LINK dbLink ON etn.anatomy_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' order by term_nm, term_acc_txt;
Date: 2024-02-07 17:12:29 Duration: 3s171ms Bind query: yes
8 3s162ms 3s162ms 3s162ms 1 3s162ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 07 05 1 3s162ms 3s162ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-02-07 05:47:30 Duration: 3s162ms Bind query: yes
9 3s58ms 3s58ms 3s58ms 1 3s58ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id left outer join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? left outer join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? left outer join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id where currentprimaryterm.nm is null order by term_nm, term_acc_txt;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 07 11 1 3s58ms 3s58ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 LEFT OUTER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 LEFT OUTER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id WHERE currentPrimaryTerm.nm is null order by term_nm, term_acc_txt;
Date: 2024-02-07 11:41:48 Duration: 3s58ms Bind query: yes
10 2s652ms 2s652ms 2s652ms 1 2s652ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 07 05 1 2s652ms 2s652ms -
SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1275443)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-02-07 05:48:28 Duration: 2s652ms Bind query: yes
11 1s4ms 3s306ms 2s155ms 2 4s311ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 07 05 2 4s311ms 2s155ms [ User: pubeu - Total duration: 3s306ms - Times executed: 1 ]
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '584887' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-02-07 05:45:12 Duration: 3s306ms Database: ctddev51 User: pubeu Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '1414505' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-02-07 05:45:13 Duration: 1s4ms Bind query: yes
12 1s878ms 2s254ms 2s136ms 4 8s546ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) order by r.sort_txt limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 07 05 4 8s546ms 2s136ms -
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:48:06 Duration: 2s254ms Bind query: yes
-
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2036477')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:48:03 Duration: 2s212ms Bind query: yes
-
SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1275443')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-02-07 05:47:53 Duration: 2s201ms Bind query: yes
13 1s606ms 1s606ms 1s606ms 1 1s606ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 07 05 1 1s606ms 1s606ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-02-07 05:47:25 Duration: 1s606ms Bind query: yes
14 1s506ms 1s550ms 1s528ms 2 3s56ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 07 05 2 3s56ms 1s528ms [ User: pubeu - Total duration: 1s550ms - Times executed: 1 ]
-
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-02-07 05:48:10 Duration: 1s550ms Database: ctddev51 User: pubeu Bind query: yes
-
SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-02-07 05:48:11 Duration: 1s506ms Bind query: yes
15 1s467ms 1s488ms 1s474ms 3 4s423ms select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where upper(a.object_nm) <> upper(t.nm) union select distinct ? as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where upper(a.anatomy_nm) <> upper(t.nm) union select distinct ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, ? from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id where upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null and anatomy_acc_txt <> ? union select distinct ?, etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, ? from edit.exp_stressor etn left outer join pub1.term t on etn.chem_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_stressor_id = etn.id where upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null and chem_acc_txt <> ? union select distinct ?, etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, ? from edit.exp_outcome etn left outer join pub1.term t on etn.disease_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null and disease_acc_txt <> ? union select distinct ?, etn.phenotype_acc_txt as term_acc_txt, etn.phenotype_term_nm as term_nm, t.nm, ? from edit.exp_outcome etn left outer join pub1.term t on etn.phenotype_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where upper(etn.phenotype_term_nm) <> upper(t.nm) and phenotype_acc_txt is not null and phenotype_acc_txt <> ? union select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, ? from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id where upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null and term_acc_txt <> ? union select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, ? from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id where upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null and etn.exp_marker_acc_txt <> ? union select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, ? from edit.medium etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.term_object_type_id = t.object_type_id inner join edit.object_type o on etn.term_object_type_id = o.id where upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null and etn.term_acc_txt <> ? order by cd, term_nm;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 07 11 3 4s423ms 1s474ms -
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:32:03 Duration: 1s488ms Bind query: yes
-
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:41:00 Duration: 1s467ms Bind query: yes
-
select distinct o.cd as cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, t.nm, taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.object_nm) <> upper(t.nm) UNION select distinct 'anatomy' as cd, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, t.nm, taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper(a.anatomy_nm) <> upper(t.nm) UNION select distinct 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper(etn.anatomy_term_nm) <> upper(t.nm) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper(etn.chem_term_nm) <> upper(t.nm) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.disease_term_nm) <> upper(t.nm) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper(etn.term_nm) <> upper(t.nm) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper(etn.exp_marker_term_nm) <> upper(t.nm) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, t.nm, '' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper(etn.term_nm) <> upper(t.nm) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm;
Date: 2024-02-07 11:43:44 Duration: 1s467ms Bind query: yes
16 1s351ms 1s351ms 1s351ms 1 1s351ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 07 05 1 1s351ms 1s351ms -
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-02-07 05:47:08 Duration: 1s351ms Bind query: yes
17 1s323ms 1s323ms 1s323ms 1 1s323ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and chemterm.id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 07 05 1 1s323ms 1s323ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and chemTerm.id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-02-07 05:48:55 Duration: 1s323ms Bind query: yes
18 1s239ms 1s239ms 1s239ms 1 1s239ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 07 05 1 1s239ms 1s239ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2036477') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2036477') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-02-07 05:48:42 Duration: 1s239ms Bind query: yes
19 1s170ms 1s170ms 1s170ms 1 1s170ms select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, taxon.nm, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id inner join pub1.db_link dblink on a.acc_txt = dblink.acc_txt and a.object_type_id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where t.nm is null union select distinct ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, taxon.nm, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id inner join pub1.db_link dblink on a.anatomy_acc_txt = dblink.acc_txt and dblink.object_type_id = ? inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where t.nm is null union select o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id inner join pub1.db_link dblink on etn.term_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? where t.nm is null and term_acc_txt is not null and term_acc_txt <> ? union select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, ?, currentprimaryterm.nm, currentprimaryterm.acc_txt from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id inner join pub1.db_link dblink on etn.exp_marker_acc_txt = dblink.acc_txt and o.id = dblink.object_type_id inner join pub1.term currentprimaryterm on dblink.object_id = currentprimaryterm.id and type_cd = ? where t.nm is null and exp_marker_acc_txt is not null and exp_marker_acc_txt <> ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 07 11 1 1s170ms 1s170ms -
select distinct o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, taxon.nm, currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id INNER JOIN pub1.DB_LINK dbLink ON a.acc_txt = dbLink.acc_txt AND a.object_type_id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE t.nm is null UNION select distinct 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, taxon.nm, currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN pub1.DB_LINK dbLink ON a.anatomy_acc_txt = dbLink.acc_txt AND dbLink.object_type_id = 10 INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE t.nm is null UNION select o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, '', -- taxon not Exposure-related currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id INNER JOIN pub1.DB_LINK dbLink ON etn.term_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' WHERE t.nm is null and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, '', -- taxon not Exposure-related currentPrimaryTerm.nm, currentPrimaryTerm.acc_txt from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id INNER JOIN pub1.DB_LINK dbLink ON etn.exp_marker_acc_txt = dbLink.acc_txt AND o.id = dbLink.object_type_id INNER JOIN pub1.TERM currentPrimaryTerm ON dbLink.object_id = currentPrimaryTerm.id and type_cd = 'A' WHERE t.nm is null and exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2024-02-07 11:41:15 Duration: 1s170ms Bind query: yes
20 1s150ms 1s150ms 1s150ms 1 1s150ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 07 05 1 1s150ms 1s150ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1196392') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1196392') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-02-07 05:48:39 Duration: 1s150ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
-
Events
Log levels
Key values
- 8,841 Log entries
Events distribution
Key values
- 0 PANIC entries
- 32 FATAL entries
- 30 ERROR entries
- 0 WARNING entries
Most Frequent Errors/Events
Key values
- 21 Max number of times the same event was reported
- 62 Total events found
Rank Times reported Error 1 21 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #1
Day Hour Count Feb 07 09 11 10 10 - FATAL: connection to client lost
- FATAL: connection to client lost
- FATAL: connection to client lost
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID
Date: 2024-02-07 09:26:25
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 10 and t.id = l.TERM_ID
Date: 2024-02-07 09:26:37
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 5 and t.id = l.TERM_ID
Date: 2024-02-07 09:28:07
2 18 LOG: could not send data to client: Connection timed out
Times Reported Most Frequent Error / Event #2
Day Hour Count Feb 07 09 12 10 6 - ERROR: could not send data to client: Connection timed out
- ERROR: could not send data to client: Connection timed out
- ERROR: could not send data to client: Connection timed out
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID
Date: 2024-02-07 09:26:25 Database: ctddev51 Application: User: editeu Remote:
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 10 and t.id = l.TERM_ID
Date: 2024-02-07 09:26:37 Database: ctddev51 Application: User: editeu Remote:
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 5 and t.id = l.TERM_ID
Date: 2024-02-07 09:28:07 Database: ctddev51 Application: User: editeu Remote:
3 11 FATAL: terminating background worker "..." due to administrator command
Times Reported Most Frequent Error / Event #3
Day Hour Count Feb 07 09 8 10 3 - FATAL: terminating background worker "parallel worker" due to administrator command
- FATAL: terminating background worker "parallel worker" due to administrator command
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 2 and t.id = l.TERM_ID
Date: 2024-02-07 09:28:16
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 5 and t.id = l.TERM_ID
Date: 2024-02-07 09:54:04
4 7 LOG: could not send data to client: Connection reset by peer
Times Reported Most Frequent Error / Event #4
Day Hour Count Feb 07 09 2 10 5 - ERROR: could not send data to client: Connection reset by peer
- ERROR: could not send data to client: Connection reset by peer
- ERROR: could not send data to client: Connection reset by peer
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID
Date: 2024-02-07 09:42:31 Database: ctddev51 Application: User: editeu Remote:
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID
Date: 2024-02-07 09:42:31 Database: ctddev51 Application: User: editeu Remote:
Statement: select t.ID ,t.OBJECT_TYPE_ID ,t.ACC_TXT ,t.ACC_DB_CD ,t.NM ,t.NM_SORT ,t.SECONDARY_NM ,t.DESCRIPTION ,t.NOTE ,l.NM from pub1.TERM t ,pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 2 and t.id = l.TERM_ID
Date: 2024-02-07 10:53:27 Database: ctddev51 Application: User: editeu Remote:
5 3 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #5
Day Hour Count Feb 07 01 3 6 1 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #6
Day Hour Count Feb 07 10 1 7 1 ERROR: each UNION query must have the same number of columns
Times Reported Most Frequent Error / Event #7
Day Hour Count Feb 07 11 1 - ERROR: each UNION query must have the same number of columns at character 5286
Statement: select distinct o.cd as cd ,a.acc_txt as term_acc_txt ,a.object_nm as term_nm ,t.nm ,taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper ( a.object_nm ) <> upper ( t.nm ) UNION select distinct 'anatomy' as cd ,a.anatomy_acc_txt as term_acc_txt ,a.anatomy_nm as term_nm ,t.nm ,taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE upper ( a.anatomy_nm ) <> upper ( t.nm ) UNION select distinct 'anatomy' ,etn.anatomy_acc_txt as term_acc_txt ,etn.anatomy_term_nm as term_nm ,t.nm ,'' -- taxon not Exposure-related from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE upper ( etn.anatomy_term_nm) <> upper ( t.nm ) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select distinct 'chem' ,etn.chem_acc_txt as term_acc_txt ,etn.chem_term_nm as term_nm ,t.nm ,'' -- taxon not Exposure-related from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE upper ( etn.chem_term_nm) <> upper ( t.nm ) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select distinct 'disease' ,etn.disease_acc_txt as term_acc_txt ,etn.disease_term_nm as term_nm ,t.nm ,'' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper ( etn.disease_term_nm) <> upper ( t.nm ) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select distinct 'go' ,etn.phenotype_acc_txt as term_acc_txt ,etn.PHENOTYPE_TERM_NM as term_nm ,t.nm ,'' -- taxon not Exposure-related from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE upper ( etn.PHENOTYPE_TERM_NM) <> upper ( t.nm ) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select distinct o.cd ,etn.term_acc_txt as term_acc_txt ,etn.term_nm as term_nm ,t.nm ,'' -- taxon not Exposure-related from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE upper ( etn.term_nm) <> upper ( t.nm ) and term_acc_txt is not null AND term_acc_txt <> '' UNION select distinct o.cd ,etn.exp_marker_acc_txt as term_acc_txt ,etn.exp_marker_term_nm as term_nm ,'' -- taxon not Exposure-related from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE upper ( etn.exp_marker_term_nm ) <> upper ( t.nm ) and etn.exp_marker_acc_txt is not null AND etn.exp_marker_acc_txt <> '' UNION select distinct o.cd ,etn.term_acc_txt as term_acc_txt ,etn.term_nm as term_nm ,'Medium Record - No Seq' ,t.nm ,t.acc_txt ,'' -- taxon not Exposure-related from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE upper ( etn.term_nm ) <> upper ( t.nm ) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' order by cd, term_nm
Date: 2024-02-07 11:28:21