select distinct e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age as receptor_age, age_uom.nm as receptor_age_unit, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) or eevent.exp_marker_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_unit, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id;

[ Date: 2024-10-29 10:00:23 ]

select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;

[ Date: 2024-10-29 05:48:46 - Database: ctddev51 - User: pubeu - Bind query: yes ]

select e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age as receptor_age, age_uom.nm as receptor_age_unit, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) or eevent.exp_marker_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_unit, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id;

[ Date: 2024-10-29 10:00:07 ]

select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;

[ Date: 2024-10-29 05:48:52 - Bind query: yes ]

select e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age as receptor_age, age_uom.nm as receptor_age_unit, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) or eevent.exp_marker_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_unit, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id except select distinct e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age as receptor_age, age_uom.nm as receptor_age_unit, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) or eevent.exp_marker_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_unit, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id;

[ Date: 2024-10-29 09:59:35 - Database: ctddev51 - User: editeu - Application: pgAdmin 4 - CONN:9986559 ]

select e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age as receptor_age, age_uom.nm as receptor_age_unit, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) or eevent.exp_marker_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_unit, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id except ( select distinct e.reference_acc_txt as pubmed_id, pref.abbr_authors_txt as author, referenceExp.author_summary, ( Select STRING_AGG(distinct eventproject.project_nm, '|')) as associated_study_titles, eevent.collection_start_yr as collection_start_year, eevent.collection_end_yr as collection_end_year, ( Select STRING_AGG(distinct studyFactor.nm, '|')) as study_factor, ( Select STRING_AGG(distinct stressorSrcType.cd, '|')) as stressor_source_category, stressor.chem_term_nm as stressor_chemical, stressor.src_details as stressor_source_details, stressor.sample_qty as number_of_stressor_samples, stressor.note as stressor_notes, ereceptor.qty as number_of_receptors, ereceptor.description as receptor, ereceptor.term_nm as receptor_description, ereceptor.term_acc_txt as receptor_id, ereceptor.note as receptor_note, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF (CAST(receptorTobaccoUse.pct as int), 0)) || '% ', tobaccoUse.nm)), '|')) as smoker_status, ereceptor.age as receptor_age, age_uom.nm as receptor_age_unit, age_qualifier.nm as receptor_age_qualifier, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF (CAST(pct as int), 0)) || '% ', gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id = gender.id where exp_receptor_id = ereceptor.id) as receptor_gender, ( Select STRING_AGG(distinct COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF (CAST(receptorRace.pct as int), 0)) || '% ', race.nm)), '|')) as receptor_race, ( Select STRING_AGG(distinct eventAssayMethod.nm, '|')) as methods, eevent.detection_limit as detection_limit, eevent.detection_limit_uom as detection_limit_unit, eevent.detection_freq as detection_frequency, emedium.nm as medium, eevent.exp_marker_term_nm as biomarker, eevent.exp_marker_lvl as biomarker_level, eevent.assay_uom as assay_unit, eevent.assay_measurement_stat as assay_measurement_statistic, eevent.assay_note as assay_notes, ( Select STRING_AGG(distinct country.nm, '|')) as country, ( Select STRING_AGG(distinct eventLocation.geographic_region_nm, '|')) as state_or_province, ( Select STRING_AGG(distinct eventLocation.locality_txt, '|')) as region, eevent.note as event_note, eiot.description as outcome_interaction, outcome.disease_term_nm as disease, outcome.phenotype_action_degree_type_nm as phenotype_action_qualifier, outcome.phenotype_term_nm as phenotype, ( Select STRING_AGG(distinct expAnatomy.anatomy_term_nm, '|')) as anatomy, outcome.note as outcome_note from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) or eevent.exp_marker_acc_txt in ( select acc_txt from term where id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1336078)) group by pubmed_id, author, author_summary, collection_start_year, collection_end_year, stressor_chemical, stressor_source_details, number_of_stressor_samples, stressor_notes, number_of_receptors, receptor_description, receptor, receptor_id, receptor_note, receptor_age, receptor_age_unit, receptor_age_qualifier, detection_limit, detection_limit_unit, detection_frequency, medium, biomarker, biomarker_level, assay_unit, assay_measurement_statistic, assay_notes, event_note, outcome_interaction, disease, phenotype_action_qualifier, phenotype, outcome_note, ereceptor.id);

[ Date: 2024-10-29 10:01:05 ]

select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;

[ Date: 2024-10-29 12:43:19 - Database: ctddev51 - User: editeu - Bind query: yes ]

SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1297559)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;

[ Date: 2024-10-29 05:48:24 - Database: ctddev51 - User: pubeu - Bind query: yes ]

SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));

[ Date: 2024-10-29 05:47:19 - Database: ctddev51 - User: pubeu - Bind query: yes ]

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;

[ Date: 2024-10-29 05:47:24 - Bind query: yes ]

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

[ Date: 2024-10-29 05:47:32 - Bind query: yes ]

WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '593015' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;

[ Date: 2024-10-29 05:45:12 - Database: ctddev51 - User: pubeu - Bind query: yes ]

select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub1.TERM t, pub1.TERM_LABEL l where t.OBJECT_TYPE_ID = 1 and t.id = l.TERM_ID;

[ Date: 2024-10-29 12:43:18 - Database: ctddev51 - User: editeu - Bind query: yes ]

select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;

[ Date: 2024-10-29 05:48:56 - Bind query: yes ]

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;

[ Date: 2024-10-29 05:47:28 - Bind query: yes ]

SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;