pgBadger-
Global information
- Generated on Sun Aug 25 04:10:08 2024
- Log file: /project/archive/log/postgres/dbdev51/postgresql.log-20240824
- Parsed 139,761 log entries in 7s
- Log start from 2024-08-18 00:01:12 to 2024-08-24 23:59:58
-
Overview
Global Stats
- 86 Number of unique normalized queries
- 521 Number of queries
- 3d8h32m41s Total query duration
- 2024-08-18 05:45:12 First query
- 2024-08-24 05:49:03 Last query
- 2 queries/s at 2024-08-23 05:49:04 Query peak
- 3d8h32m41s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 3d8h32m41s Execute total duration
- 1,550 Number of events
- 17 Number of unique normalized events
- 565 Max number of times the same event was reported
- 0 Number of cancellation
- 1 Total number of automatic vacuums
- 0 Total number of automatic analyzes
- 2,673 Number temporary file
- 1.83 TiB Max size of temporary file
- 1018.22 MiB Average size of temporary file
- 13,990 Total number of sessions
- 551 sessions at 2024-08-23 03:24:24 Session peak
- 402d10h7m48s Total duration of sessions
- 41m25s Average duration of sessions
- 0 Average queries per session
- 20s726ms Average queries duration per session
- 41m4s Average idle time per session
- 13,993 Total number of connections
- 9 connections/s at 2024-08-23 13:22:02 Connection peak
- 3 Total number of databases
SQL Traffic
Key values
- 2 queries/s Query Peak
- 2024-08-23 05:49:04 Date
SELECT Traffic
Key values
- 2 queries/s Query Peak
- 2024-08-23 05:49:04 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2024-08-20 05:45:13 Date
Queries duration
Key values
- 3d8h32m41s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 18 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 20 0ms 4s100ms 2s176ms 4s439ms 15s32ms 24s65ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 19 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 20 0ms 4s305ms 2s256ms 4s368ms 15s562ms 25s204ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 3 0ms 2s930ms 2s924ms 2s917ms 2s925ms 2s930ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 1 0ms 9m39s 9m39s 0ms 0ms 9m39s 14 1 0ms 10m43s 10m43s 0ms 0ms 10m43s 15 4 0ms 2h5m44s 41m3s 8m54s 20m43s 2h5m44s 16 1 0ms 9m 9m 0ms 0ms 9m 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 20 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 20 0ms 4s190ms 2s204ms 0ms 15s4ms 24s640ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 6 0ms 8m57s 1m32s 1s619ms 7s72ms 8m57s 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 2 0ms 13s78ms 11s602ms 0ms 10s127ms 13s78ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 5 0ms 31s428ms 15s531ms 6s909ms 30s86ms 31s428ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 21 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 34 0ms 4s194ms 2s353ms 18s355ms 20s739ms 36s417ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 16 0ms 9s606ms 3s503ms 11s991ms 15s20ms 16s862ms 11 8 0ms 5s933ms 3s155ms 5s933ms 7s370ms 11s942ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 3 0ms 3s70ms 2s388ms 0ms 2s65ms 3s70ms 15 1 0ms 42s719ms 42s719ms 0ms 0ms 42s719ms 16 6 0ms 9m9s 1m46s 5s779ms 49s232ms 9m9s 17 4 0ms 3s626ms 2s335ms 0ms 4s597ms 4s744ms 18 6 0ms 3s557ms 2s300ms 0ms 4s576ms 9s225ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 1 0ms 1d11h38m15s 1d11h38m15s 0ms 0ms 1d11h38m15s 23 1 0ms 1d12h40m56s 1d12h40m56s 0ms 0ms 1d12h40m56s Aug 22 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 21 0ms 4s162ms 2s188ms 0ms 15s592ms 25s784ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 1 0ms 2m11s 2m11s 0ms 0ms 2m11s 11 1 0ms 1h28m27s 1h28m27s 0ms 0ms 1h28m27s 12 5 0ms 20m39s 4m9s 1s279ms 4s508ms 20m39s 13 16 0ms 30m18s 3m45s 2s977ms 29m24s 30m25s 14 28 0ms 42m31s 1m34s 6s862ms 10s166ms 42m36s 15 14 0ms 42m45s 3m5s 2s667ms 5s102ms 42m45s 16 12 0ms 31s721ms 10s130ms 2s812ms 24s430ms 31s721ms 17 14 0ms 26s125ms 5s339ms 2s713ms 4s264ms 26s125ms 18 16 0ms 2s986ms 1s807ms 2s357ms 3s714ms 4s473ms 19 12 0ms 2s984ms 2s231ms 2s472ms 2s841ms 4s945ms 20 14 0ms 2s996ms 2s174ms 2s804ms 2s984ms 7s62ms 21 12 0ms 2s754ms 1s819ms 2s67ms 2s529ms 2s754ms 22 15 0ms 3s22ms 1s736ms 1s822ms 4s182ms 4s582ms 23 15 0ms 3s9ms 2s62ms 2s733ms 3s5ms 3s9ms Aug 23 00 14 0ms 2s980ms 1s867ms 2s727ms 2s954ms 2s980ms 01 13 0ms 3s44ms 1s989ms 2s734ms 4s385ms 5s668ms 02 11 0ms 2s639ms 1s710ms 1s684ms 2s286ms 2s639ms 03 14 0ms 2s771ms 1s730ms 3s99ms 3s885ms 5s81ms 04 19 0ms 2s903ms 2s114ms 2s839ms 3s250ms 4s395ms 05 54 0ms 8s274ms 2s693ms 22s222ms 27s639ms 37s150ms 06 1 0ms 1s207ms 1s207ms 0ms 0ms 1s207ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 4 0ms 3s827ms 2s435ms 0ms 4s784ms 4s957ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 1 0ms 2s969ms 2s969ms 0ms 0ms 2s969ms 13 2 0ms 3s647ms 2s404ms 0ms 0ms 4s809ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 8 0ms 3s740ms 2s378ms 4s756ms 4s773ms 4s867ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Aug 24 00 0 0ms 0ms 0ms 0ms 0ms 0ms 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 21 0ms 4s357ms 2s180ms 4s846ms 16s775ms 20s358ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 18 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 18 0 2s172ms 0ms 0ms 24s65ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Aug 19 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 18 0 2s264ms 0ms 0ms 25s204ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 3 0 2s924ms 0ms 2s917ms 2s930ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 1 0 9m39s 0ms 0ms 9m39s 14 1 0 10m43s 0ms 0ms 10m43s 15 4 0 41m3s 0ms 8m54s 2h5m44s 16 1 0 9m 0ms 0ms 9m 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Aug 20 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 18 0 2s202ms 0ms 0ms 24s640ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 6 0 1m32s 0ms 1s619ms 8m57s 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 5 0 15s531ms 0ms 6s909ms 31s428ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Aug 21 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 32 0 2s359ms 0ms 18s355ms 36s417ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 16 0 3s503ms 0ms 11s991ms 16s862ms 11 8 0 3s155ms 0ms 5s933ms 11s942ms 12 0 0 0ms 0ms 0ms 0ms 13 0 0 0ms 0ms 0ms 0ms 14 1 0 2s65ms 0ms 0ms 2s65ms 15 1 0 42s719ms 0ms 0ms 42s719ms 16 6 0 1m46s 0ms 5s779ms 9m9s 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 1 0 1d11h38m15s 0ms 0ms 1d11h38m15s 23 1 0 1d12h40m56s 0ms 0ms 1d12h40m56s Aug 22 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 19 0 2s177ms 0ms 0ms 25s784ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 1 0 2m11s 0ms 0ms 2m11s 11 1 0 1h28m27s 0ms 0ms 1h28m27s 12 3 0 6m54s 0ms 0ms 20m39s 13 11 0 2m41s 1s126ms 2s791ms 29m24s 14 17 0 3s154ms 1s572ms 4s74ms 14s573ms 15 13 0 2s937ms 1s369ms 2s663ms 13s876ms 16 12 0 10s130ms 1s915ms 2s812ms 31s721ms 17 14 0 5s339ms 2s78ms 2s713ms 26s125ms 18 16 0 1s807ms 1s278ms 2s357ms 4s473ms 19 12 0 2s231ms 1s625ms 2s472ms 4s945ms 20 14 0 2s174ms 1s650ms 2s804ms 7s62ms 21 12 0 1s819ms 1s434ms 2s67ms 2s754ms 22 15 0 1s736ms 1s232ms 1s822ms 4s582ms 23 15 0 2s62ms 2s452ms 2s733ms 3s9ms Aug 23 00 14 0 1s867ms 1s532ms 2s727ms 2s980ms 01 13 0 1s989ms 1s600ms 2s734ms 5s668ms 02 11 0 1s710ms 1s508ms 1s684ms 2s639ms 03 14 0 1s730ms 1s106ms 3s99ms 5s81ms 04 19 0 2s114ms 2s440ms 2s839ms 4s395ms 05 52 0 2s669ms 2s481ms 22s222ms 37s150ms 06 1 0 1s207ms 0ms 0ms 1s207ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 1 0 2s969ms 0ms 0ms 2s969ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Aug 24 00 0 0 0ms 0ms 0ms 0ms 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 19 0 2s154ms 0ms 3s800ms 20s358ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Aug 18 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 19 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 20 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 21 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 22 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 23 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Aug 24 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Aug 18 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 20 20.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Aug 19 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 20 20.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 3 3.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Aug 20 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 20 20.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 5 5.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Aug 21 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 34 34.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 16 16.00 0.00% 11 0 8 8.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 4 4.00 0.00% 18 0 6 6.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Aug 22 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 21 21.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 4 4.00 0.00% 13 0 12 12.00 0.00% 14 0 20 20.00 0.00% 15 0 12 12.00 0.00% 16 0 8 8.00 0.00% 17 0 11 11.00 0.00% 18 0 16 16.00 0.00% 19 0 12 12.00 0.00% 20 0 14 14.00 0.00% 21 0 12 12.00 0.00% 22 0 15 15.00 0.00% 23 0 15 15.00 0.00% Aug 23 00 0 14 14.00 0.00% 01 0 13 13.00 0.00% 02 0 11 11.00 0.00% 03 0 14 14.00 0.00% 04 0 19 19.00 0.00% 05 0 54 54.00 0.00% 06 0 1 1.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 4 4.00 0.00% 11 0 0 0.00 0.00% 12 0 1 1.00 0.00% 13 0 2 2.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 8 8.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Aug 24 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 21 21.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Aug 18 00 80 0.02/s 01 80 0.02/s 02 80 0.02/s 03 80 0.02/s 04 80 0.02/s 05 84 0.02/s 06 76 0.02/s 07 79 0.02/s 08 78 0.02/s 09 77 0.02/s 10 72 0.02/s 11 80 0.02/s 12 79 0.02/s 13 80 0.02/s 14 79 0.02/s 15 80 0.02/s 16 78 0.02/s 17 73 0.02/s 18 78 0.02/s 19 80 0.02/s 20 76 0.02/s 21 77 0.02/s 22 79 0.02/s 23 80 0.02/s Aug 19 00 80 0.02/s 01 80 0.02/s 02 80 0.02/s 03 80 0.02/s 04 79 0.02/s 05 81 0.02/s 06 79 0.02/s 07 78 0.02/s 08 77 0.02/s 09 72 0.02/s 10 80 0.02/s 11 79 0.02/s 12 80 0.02/s 13 85 0.02/s 14 79 0.02/s 15 83 0.02/s 16 77 0.02/s 17 77 0.02/s 18 79 0.02/s 19 76 0.02/s 20 77 0.02/s 21 76 0.02/s 22 80 0.02/s 23 80 0.02/s Aug 20 00 79 0.02/s 01 79 0.02/s 02 80 0.02/s 03 78 0.02/s 04 78 0.02/s 05 88 0.02/s 06 76 0.02/s 07 77 0.02/s 08 72 0.02/s 09 81 0.02/s 10 82 0.02/s 11 80 0.02/s 12 82 0.02/s 13 80 0.02/s 14 78 0.02/s 15 80 0.02/s 16 78 0.02/s 17 77 0.02/s 18 75 0.02/s 19 77 0.02/s 20 79 0.02/s 21 80 0.02/s 22 80 0.02/s 23 79 0.02/s Aug 21 00 79 0.02/s 01 80 0.02/s 02 77 0.02/s 03 80 0.02/s 04 79 0.02/s 05 83 0.02/s 06 77 0.02/s 07 72 0.02/s 08 78 0.02/s 09 77 0.02/s 10 116 0.03/s 11 92 0.03/s 12 76 0.02/s 13 78 0.02/s 14 81 0.02/s 15 82 0.02/s 16 80 0.02/s 17 87 0.02/s 18 104 0.03/s 19 79 0.02/s 20 80 0.02/s 21 80 0.02/s 22 79 0.02/s 23 73 0.02/s Aug 22 00 80 0.02/s 01 79 0.02/s 02 80 0.02/s 03 77 0.02/s 04 78 0.02/s 05 90 0.03/s 06 70 0.02/s 07 80 0.02/s 08 77 0.02/s 09 79 0.02/s 10 80 0.02/s 11 80 0.02/s 12 93 0.03/s 13 133 0.04/s 14 166 0.05/s 15 134 0.04/s 16 119 0.03/s 17 131 0.04/s 18 135 0.04/s 19 105 0.03/s 20 113 0.03/s 21 105 0.03/s 22 113 0.03/s 23 105 0.03/s Aug 23 00 96 0.03/s 01 103 0.03/s 02 90 0.03/s 03 96 0.03/s 04 91 0.03/s 05 107 0.03/s 06 84 0.02/s 07 78 0.02/s 08 79 0.02/s 09 83 0.02/s 10 97 0.03/s 11 72 0.02/s 12 80 0.02/s 13 88 0.02/s 14 79 0.02/s 15 76 0.02/s 16 76 0.02/s 17 109 0.03/s 18 80 0.02/s 19 80 0.02/s 20 80 0.02/s 21 78 0.02/s 22 79 0.02/s 23 74 0.02/s Aug 24 00 79 0.02/s 01 78 0.02/s 02 78 0.02/s 03 71 0.02/s 04 76 0.02/s 05 91 0.03/s 06 78 0.02/s 07 79 0.02/s 08 80 0.02/s 09 80 0.02/s 10 80 0.02/s 11 80 0.02/s 12 80 0.02/s 13 81 0.02/s 14 75 0.02/s 15 76 0.02/s 16 78 0.02/s 17 75 0.02/s 18 80 0.02/s 19 80 0.02/s 20 80 0.02/s 21 79 0.02/s 22 80 0.02/s 23 79 0.02/s Day Hour Count Average Duration Average idle time Aug 18 00 80 30m39s 30m39s 01 80 30m39s 30m39s 02 80 30m41s 30m41s 03 80 30m39s 30m39s 04 80 30m39s 30m39s 05 84 28m43s 28m43s 06 76 30m38s 30m38s 07 79 30m39s 30m39s 08 78 30m41s 30m41s 09 77 30m38s 30m38s 10 72 30m40s 30m40s 11 80 30m40s 30m40s 12 79 30m38s 30m38s 13 80 30m40s 30m40s 14 79 30m41s 30m41s 15 80 30m38s 30m38s 16 78 30m40s 30m40s 17 73 30m41s 30m41s 18 78 30m38s 30m38s 19 80 30m41s 30m41s 20 76 30m40s 30m40s 21 77 30m38s 30m38s 22 79 30m41s 30m41s 23 80 30m39s 30m39s Aug 19 00 80 30m39s 30m39s 01 80 30m41s 30m41s 02 80 30m39s 30m39s 03 80 30m39s 30m39s 04 79 30m41s 30m41s 05 81 28m38s 28m37s 06 79 30m39s 30m39s 07 78 30m40s 30m40s 08 77 30m24s 30m24s 09 72 30m48s 30m48s 10 80 30m40s 30m40s 11 79 30m38s 30m38s 12 80 30m40s 30m40s 13 80 30m40s 30m33s 14 79 30m38s 30m30s 15 80 30m28s 28m25s 16 75 31m40s 31m33s 17 77 30m59s 30m59s 18 81 33m20s 33m20s 19 82 52m46s 52m46s 20 78 33m53s 33m53s 21 76 30m40s 30m40s 22 80 30m39s 30m39s 23 80 30m40s 30m40s Aug 20 00 79 30m40s 30m40s 01 79 30m39s 30m39s 02 80 30m39s 30m39s 03 78 30m40s 30m40s 04 78 30m40s 30m40s 05 88 28m2s 28m2s 06 76 30m39s 30m39s 07 77 30m38s 30m38s 08 72 30m40s 30m40s 09 78 30m40s 30m40s 10 79 30m21s 30m14s 11 80 30m40s 30m40s 12 80 30m40s 30m39s 13 80 30m39s 30m39s 14 78 31m5s 31m5s 15 80 30m39s 30m39s 16 78 30m39s 30m38s 17 76 30m40s 30m40s 18 75 30m40s 30m40s 19 77 30m39s 30m39s 20 79 30m41s 30m41s 21 82 39m24s 39m24s 22 85 1h10m18s 1h10m18s 23 79 30m40s 30m40s Aug 21 00 79 30m39s 30m39s 01 80 30m39s 30m39s 02 77 30m40s 30m40s 03 80 30m40s 30m40s 04 79 30m39s 30m39s 05 83 28m36s 28m35s 06 77 30m37s 30m37s 07 72 30m41s 30m41s 08 78 30m40s 30m40s 09 77 30m39s 30m39s 10 116 22m29s 22m29s 11 92 24m48s 24m47s 12 76 31m11s 31m11s 13 78 31m56s 31m56s 14 79 30m39s 30m39s 15 80 30m39s 30m38s 16 77 30m42s 30m34s 17 88 28m48s 28m47s 18 104 23m57s 23m57s 19 79 30m39s 30m39s 20 80 30m40s 30m40s 21 80 30m39s 30m39s 22 80 57m26s 30m43s 23 74 1h34s 30m50s Aug 22 00 80 30m39s 30m39s 01 79 30m40s 30m40s 02 80 30m39s 30m39s 03 77 30m39s 30m39s 04 78 30m41s 30m41s 05 90 26m51s 26m50s 06 70 30m39s 30m39s 07 80 30m40s 30m40s 08 77 30m39s 30m39s 09 78 30m40s 30m40s 10 79 30m40s 30m38s 11 80 30m55s 29m49s 12 87 26m33s 26m19s 13 133 18h40m17s 18h39m50s 14 165 15m20s 15m4s 15 134 19m4s 18m44s 16 119 20m37s 20m36s 17 130 18m35s 18m34s 18 144 1h5m44s 1h5m44s 19 109 1h26s 1h25s 20 113 22m50s 22m50s 21 105 24m16s 24m16s 22 113 22m55s 22m55s 23 105 24m1s 24m1s Aug 23 00 96 26m58s 26m58s 01 103 24m45s 24m44s 02 90 27m42s 27m42s 03 96 26m17s 26m17s 04 91 25m8s 25m8s 05 107 23m2s 23m1s 06 85 40m38s 40m38s 07 78 30m38s 30m38s 08 79 30m41s 30m41s 09 80 30m40s 30m40s 10 96 26m7s 26m7s 11 72 30m40s 30m40s 12 80 30m39s 30m39s 13 88 29m19s 29m19s 14 79 30m57s 30m57s 15 77 34m43s 34m43s 16 76 30m39s 30m39s 17 109 22m30s 22m29s 18 80 30m39s 30m39s 19 83 51m48s 51m48s 20 80 30m40s 30m40s 21 78 30m40s 30m40s 22 79 30m39s 30m39s 23 74 30m40s 30m40s Aug 24 00 79 30m39s 30m39s 01 78 30m39s 30m39s 02 78 30m41s 30m41s 03 71 30m38s 30m38s 04 76 30m40s 30m40s 05 91 26m53s 26m52s 06 78 30m37s 30m37s 07 79 30m40s 30m40s 08 80 30m40s 30m40s 09 80 30m39s 30m39s 10 80 30m40s 30m40s 11 80 30m40s 30m40s 12 80 30m39s 30m39s 13 81 53m28s 53m28s 14 75 30m40s 30m40s 15 76 30m39s 30m39s 16 78 30m40s 30m40s 17 75 30m40s 30m40s 18 80 30m39s 30m39s 19 80 30m40s 30m40s 20 80 30m40s 30m40s 21 79 30m39s 30m39s 22 80 30m40s 30m40s 23 79 30m40s 30m40s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2024-08-23 13:22:02 Date
Connections per database
Key values
- ctddev51 Main Database
- 13,993 connections Total
Connections per user
Key values
- editeu Main User
- 13,993 connections Total
-
Sessions
Simultaneous sessions
Key values
- 551 sessions Session Peak
- 2024-08-23 03:24:24 Date
Histogram of session times
Key values
- 13,066 1800000-3600000ms duration
Sessions per database
Key values
- ctddev51 Main Database
- 13,990 sessions Total
Sessions per user
Key values
- editeu Main User
- 13,990 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 13,990 sessions Total
Host Count Total Duration Average Duration 10.12.5.47 2,630 56d18m1s 30m40s 10.12.5.53 2,814 55d23h47m46s 28m39s 10.12.5.54 2,632 56d1h20m18s 30m40s 10.12.5.55 2,632 56d1h19m39s 30m40s 10.12.5.56 2,672 56d1h3m14s 30m12s 192.168.201.10 29 9d23h14m49s 8h14m59s 192.168.201.14 19 7d19h18m10s 9h51m28s 192.168.201.18 1 5h36m33s 5h36m33s ::1 561 104d6h9m16s 4h27m36s Sessions per application
Key values
- unknown Main Application
- 13,990 sessions Total
Application Count Total Duration Average Duration pgAdmin 4 - CONN:2148537 1 1h17m11s 1h17m11s pgAdmin 4 - CONN:2703443 2 3s106ms 1s553ms pgAdmin 4 - CONN:5020715 1 311ms 311ms pgAdmin 4 - CONN:6191524 1 7m3s 7m3s pgAdmin 4 - CONN:7790416 3 10s882ms 3s627ms pgAdmin 4 - DB:ctddev51 1 326ms 326ms pgAdmin 4 - DB:postgres 1 310ms 310ms unknown 13,980 402d8h43m18s 41m26s -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 225 buffers Checkpoint Peak
- 2024-08-22 06:10:29 Date
- 22.648 seconds Highest write time
- 0.033 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2024-08-19 16:40:00 Date
Checkpoints distance
Key values
- 2.19 Mo Distance Peak
- 2024-08-22 06:10:29 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Aug 18 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 65 6.612s 0.001s 6.627s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 19 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 62 6.306s 0.001s 6.321s 07 0 0s 0s 0s 08 6 0.692s 0.001s 0.707s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 8 0.89s 0.001s 0.905s 16 116 11.814s 0.002s 11.844s 17 18 1.902s 0.001s 1.918s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 20 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 64 6.5s 0.001s 6.516s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 9 1.002s 0.001s 1.018s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 21 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 76 7.713s 0.001s 7.73s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 22 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 225 22.648s 0.001s 22.663s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 48 5.298s 0.032s 5.791s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 23 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 76 8.1s 0.033s 8.405s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 6 0.69s 0.001s 0.705s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 6 0.71s 0.001s 0.725s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Aug 24 00 0 0s 0s 0s 01 0 0s 0s 0s 02 0 0s 0s 0s 03 0 0s 0s 0s 04 0 0s 0s 0s 05 0 0s 0s 0s 06 64 6.511s 0.001s 6.527s 07 0 0s 0s 0s 08 0 0s 0s 0s 09 0 0s 0s 0s 10 0 0s 0s 0s 11 0 0s 0s 0s 12 0 0s 0s 0s 13 0 0s 0s 0s 14 0 0s 0s 0s 15 0 0s 0s 0s 16 0 0s 0s 0s 17 0 0s 0s 0s 18 0 0s 0s 0s 19 0 0s 0s 0s 20 0 0s 0s 0s 21 0 0s 0s 0s 22 0 0s 0s 0s 23 0 0s 0s 0s Day Hour Added Removed Recycled Synced files Longest sync Average sync Aug 18 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 8 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 19 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 8 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 6 0.001s 0.001s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 6 0.001s 0.001s 16 0 0 0 89 0.001s 0.002s 17 0 0 0 14 0.001s 0.001s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 20 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 7 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 8 0.001s 0.001s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 21 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 20 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 22 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 9 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 10 0.021s 0.004s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 23 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 10 0.022s 0.004s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 6 0.001s 0.001s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 6 0.001s 0.001s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Aug 24 00 0 0 0 0 0s 0s 01 0 0 0 0 0s 0s 02 0 0 0 0 0s 0s 03 0 0 0 0 0s 0s 04 0 0 0 0 0s 0s 05 0 0 0 0 0s 0s 06 0 0 0 8 0.001s 0.001s 07 0 0 0 0 0s 0s 08 0 0 0 0 0s 0s 09 0 0 0 0 0s 0s 10 0 0 0 0 0s 0s 11 0 0 0 0 0s 0s 12 0 0 0 0 0s 0s 13 0 0 0 0 0s 0s 14 0 0 0 0 0s 0s 15 0 0 0 0 0s 0s 16 0 0 0 0 0s 0s 17 0 0 0 0 0s 0s 18 0 0 0 0 0s 0s 19 0 0 0 0 0s 0s 20 0 0 0 0 0s 0s 21 0 0 0 0 0s 0s 22 0 0 0 0 0s 0s 23 0 0 0 0 0s 0s Day Hour Count Avg time (sec) Aug 18 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 19 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 20 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 21 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 22 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 23 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Aug 24 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Aug 18 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 396.00 kB 1,052.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 19 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 380.00 kB 985.00 kB 07 0.00 kB 0.00 kB 08 22.00 kB 889.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 31.00 kB 803.00 kB 16 335.00 kB 749.00 kB 17 103.00 kB 650.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 20 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 371.00 kB 622.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 16.00 kB 562.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 21 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 356.00 kB 541.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 22 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 1,121.00 kB 1,121.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 288.00 kB 1,037.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 23 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 399.00 kB 973.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 24.00 kB 878.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 22.00 kB 793.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB Aug 24 00 0.00 kB 0.00 kB 01 0.00 kB 0.00 kB 02 0.00 kB 0.00 kB 03 0.00 kB 0.00 kB 04 0.00 kB 0.00 kB 05 0.00 kB 0.00 kB 06 391.00 kB 753.00 kB 07 0.00 kB 0.00 kB 08 0.00 kB 0.00 kB 09 0.00 kB 0.00 kB 10 0.00 kB 0.00 kB 11 0.00 kB 0.00 kB 12 0.00 kB 0.00 kB 13 0.00 kB 0.00 kB 14 0.00 kB 0.00 kB 15 0.00 kB 0.00 kB 16 0.00 kB 0.00 kB 17 0.00 kB 0.00 kB 18 0.00 kB 0.00 kB 19 0.00 kB 0.00 kB 20 0.00 kB 0.00 kB 21 0.00 kB 0.00 kB 22 0.00 kB 0.00 kB 23 0.00 kB 0.00 kB -
Temporary Files
Size of temporary files
Key values
- 73.00 GiB Temp Files size Peak
- 2024-08-20 10:42:03 Date
Number of temporary files
Key values
- 73 per second Temp Files Peak
- 2024-08-20 10:42:03 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Aug 18 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 19 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 5 4.19 GiB 857.95 MiB 15 15 12.61 GiB 861.15 MiB 16 5 4.20 GiB 861.09 MiB 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 20 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 461 457.33 GiB 1015.86 MiB 11 0 0 0 12 6 5.95 GiB 1015.20 MiB 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 21 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 17 16.03 GiB 965.29 MiB 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 22 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 10 9.41 GiB 963.67 MiB 13 91 90.60 GiB 1019.51 MiB 14 91 90.60 GiB 1019.51 MiB 15 91 90.60 GiB 1019.51 MiB 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 23 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 1,881 1.83 TiB 1021.49 MiB 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Aug 24 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 182 181.20 GiB 615.82 MiB 1.00 GiB 1019.51 MiB explain analyze with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm.nm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?;-
explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 15:09:02 Duration: 42m45s
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explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 14:12:53 Duration: 42m31s
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explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 14:12:48 Duration: 0ms
2 91 90.60 GiB 615.82 MiB 1.00 GiB 1019.51 MiB select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm.nm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?) as test;-
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 13:07:40 Duration: 29m24s
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 13:07:35 Duration: 0ms
3 17 16.03 GiB 25.95 MiB 1.00 GiB 965.29 MiB select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? ) select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from initialtetramerset, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.id = initialtetramerset.chem_id and geneterm.id = initialtetramerset.gene_id and phenotypeterm.id = initialtetramerset.phenotype_id and diseaseterm.id = initialtetramerset.disease_id) as tetramercount;-
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;
Date: 2024-08-21 16:45:14 Duration: 9m9s
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;
Date: 2024-08-21 16:45:13 Duration: 0ms Database: ctddev51 User: pub2 Application: pgAdmin 4 - CONN:5020715
4 5 4.20 GiB 209.74 MiB 1.00 GiB 861.15 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
5 5 4.20 GiB 209.74 MiB 1.00 GiB 861.15 MiB select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;-
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
6 5 4.20 GiB 209.45 MiB 1.00 GiB 861.09 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
7 5 4.20 GiB 209.74 MiB 1.00 GiB 861.15 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
8 5 4.19 GiB 193.77 MiB 1.00 GiB 857.95 MiB select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;-
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
9 5 4.20 GiB 209.45 MiB 1.00 GiB 861.09 MiB select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and object_type_id = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);-
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-20 10:08:17 Duration: 8m57s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-20 10:08:16 Duration: 0ms
10 1 5.95 GiB 5.95 GiB 5.95 GiB 5.95 GiB ( select phenotype_id, viachemptr.term_id, viachemptr.via_term_id from phenotype_term_reference viachemptr where viachemptr.term_object_type_id = ? and viachemptr.via_term_object_type_id = ? and exists ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ? and viachemptr.phenotype_id = t.id)) select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.id, diseaseterm.id, chemterm.id, geneterm.id order by chemterm.nm;-
( SELECT phenotype_id, viaChemPTR.term_id, viaChemPTR.via_term_id FROM PHENOTYPE_TERM_REFERENCE viaChemPTR -- ,TERM phenotypeTerm -- ,TERM diseaseTerm -- ,TERM chemTerm -- WHERE viaChemPTR.phenotype_id = phenotypeTerm.id -- AND viaChemPTR.term_id = diseaseTerm.id -- AND viaChemPTR.via_term_id = chemTerm.id WHERE viaChemPTR.term_object_type_id = 3 AND viaChemPTR.via_term_object_type_id = 2 AND exists ( SELECT t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'NEURON') AND t.object_type_id = 5 AND viaChemPtr.phenotype_id = t.id)) select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.id, diseaseTerm.id, chemTerm.id, geneTerm.id ORDER BY chemTerm.nm;
Date: 2024-08-20 12:26:59 Duration: 0ms
11 1 9.41 GiB 9.41 GiB 9.41 GiB 9.41 GiB select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?) as test;-
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 12:33:02 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 9.41 GiB SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;[ Date: 2024-08-22 12:33:02 ]
2 5.95 GiB ( SELECT phenotype_id, viaChemPTR.term_id, viaChemPTR.via_term_id FROM PHENOTYPE_TERM_REFERENCE viaChemPTR -- ,TERM phenotypeTerm -- ,TERM diseaseTerm -- ,TERM chemTerm -- WHERE viaChemPTR.phenotype_id = phenotypeTerm.id -- AND viaChemPTR.term_id = diseaseTerm.id -- AND viaChemPTR.via_term_id = chemTerm.id WHERE viaChemPTR.term_object_type_id = 3 AND viaChemPTR.via_term_object_type_id = 2 AND exists ( SELECT t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'NEURON') AND t.object_type_id = 5 AND viaChemPtr.phenotype_id = t.id)) select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.id, diseaseTerm.id, chemTerm.id, geneTerm.id ORDER BY chemTerm.nm;[ Date: 2024-08-20 12:26:59 ]
3 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:11 ]
4 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:11 ]
5 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:11 ]
6 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:12 ]
7 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
8 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
9 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
10 1.00 GiB select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:35 ]
11 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 - Database: ctddev51 - User: pub1 - Application: pgAdmin 4 - CONN:8583072 ]
12 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
13 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
14 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
15 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
16 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
17 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
18 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
19 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:01 - Database: ctddev51 - User: pub1 - Application: pgAdmin 4 - CONN:4943641 ]
20 1.00 GiB select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:01 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0.04 sec Highest CPU-cost vacuum
Table pubc.log_query
Database ctddev51 - 2024-08-22 05:48:35 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctddev51 - Date
Average Autovacuum Duration
Key values
- 0.04 sec Highest CPU-cost vacuum
Table pubc.log_query
Database ctddev51 - 2024-08-22 05:48:35 Date
Analyzes per table
Key values
- unknown (0) Main table analyzed (database )
- 0 analyzes Total
Vacuums per table
Key values
- pubc.log_query (1) Main table vacuumed on database ctddev51
- 1 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Aug 18 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Aug 19 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Aug 20 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Aug 21 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Aug 22 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Aug 23 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 Aug 24 00 0 0 01 0 0 02 0 0 03 0 0 04 0 0 05 0 0 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 - 0.04 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 460 Total read queries
- 56 Total write queries
Queries by database
Key values
- unknown Main database
- 286 Requests
- 3d4h48m28s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 641 Requests
User Request type Count Duration editeu Total 48 2m42s select 48 2m42s pub1 Total 4 4h11m31s select 4 4h11m31s pub2 Total 6 2h58m9s select 6 2h58m9s pubeu Total 156 8m24s cte 62 4m1s select 94 4m22s unknown Total 641 6d9h39m46s cte 70 2m12s others 10 3h51m39s select 561 6d5h45m55s zbx_monitor Total 275 8m44s select 275 8m44s Duration by user
Key values
- 6d9h39m46s (unknown) Main time consuming user
User Request type Count Duration editeu Total 48 2m42s select 48 2m42s pub1 Total 4 4h11m31s select 4 4h11m31s pub2 Total 6 2h58m9s select 6 2h58m9s pubeu Total 156 8m24s cte 62 4m1s select 94 4m22s unknown Total 641 6d9h39m46s cte 70 2m12s others 10 3h51m39s select 561 6d5h45m55s zbx_monitor Total 275 8m44s select 275 8m44s Queries by host
Key values
- unknown Main host
- 1,130 Requests
- 6d17h9m18s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 516 Requests
- 3d4h57m50s (unknown)
- Main time consuming application
Application Request type Count Duration pgAdmin 4 - CONN:1663857 Total 1 1h28m27s select 1 1h28m27s pgAdmin 4 - CONN:1676782 Total 1 2h5m44s select 1 2h5m44s pgAdmin 4 - CONN:3534603 Total 1 6s909ms select 1 6s909ms pgAdmin 4 - CONN:4504232 Total 1 30s219ms select 1 30s219ms pgAdmin 4 - DB:ctddev51 Total 1 1s222ms select 1 1s222ms unknown Total 516 3d4h57m50s cte 56 2m42s others 5 1h55m49s select 455 3d2h59m18s Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-08-19 15:27:26 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 487 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 1d12h40m56s select count(*) from ( select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id)) as test;[ Date: 2024-08-21 23:23:49 ]
2 1d11h38m15s select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-21 22:27:32 ]
3 2h5m44s select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;[ Date: 2024-08-19 15:44:53 - Database: ctddev51 - User: pub1 - Application: pgAdmin 4 - CONN:1676782 ]
4 1h28m27s SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet WHERE EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;[ Date: 2024-08-22 11:51:40 - Database: ctddev51 - User: pub2 - Application: pgAdmin 4 - CONN:1663857 ]
5 42m45s explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';[ Date: 2024-08-22 15:09:02 ]
6 42m31s explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';[ Date: 2024-08-22 14:12:53 ]
7 30m18s explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P where EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C'));[ Date: 2024-08-22 13:57:42 ]
8 29m24s SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;[ Date: 2024-08-22 13:07:40 ]
9 20m43s select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 15:04:36 ]
10 20m39s SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P where EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C')) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;[ Date: 2024-08-22 12:23:52 ]
11 10m43s select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;[ Date: 2024-08-19 14:01:12 ]
12 9m39s select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;[ Date: 2024-08-19 13:21:41 ]
13 9m9s SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;[ Date: 2024-08-21 16:45:14 ]
14 9m select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 16:44:02 ]
15 8m57s select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-20 10:08:17 ]
16 8m54s select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:34:40 ]
17 8m53s select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);[ Date: 2024-08-19 15:52:15 ]
18 2m11s SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;[ Date: 2024-08-22 10:16:10 ]
19 49s232ms select count(*) from ( SELECT distinct viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) as ptrTestCount;[ Date: 2024-08-21 16:05:06 ]
20 42s719ms select count(*) from ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) as ptrTestCount;[ Date: 2024-08-21 15:55:34 ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1d12h40m56s 1 1d12h40m56s 1d12h40m56s 1d12h40m56s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id)) as test;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 21 23 1 1d12h40m56s 1d12h40m56s -
select count(*) from ( select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id)) as test;
Date: 2024-08-21 23:23:49 Duration: 1d12h40m56s
2 1d11h38m15s 1 1d11h38m15s 1d11h38m15s 1d11h38m15s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 21 22 1 1d11h38m15s 1d11h38m15s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-21 22:27:32 Duration: 1d11h38m15s
3 2h5m44s 1 2h5m44s 2h5m44s 2h5m44s select count(*) from ( select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id) as test;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 19 15 1 2h5m44s 2h5m44s [ User: pub1 - Total duration: 2h5m44s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1676782 - Total duration: 2h5m44s - Times executed: 1 ]
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select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;
Date: 2024-08-19 15:44:53 Duration: 2h5m44s Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:1676782
4 1h28m27s 1 1h28m27s 1h28m27s 1h28m27s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset where exists ( select ? from gene_chem_reference gcr where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id)) as tetramercount;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 22 11 1 1h28m27s 1h28m27s [ User: pub2 - Total duration: 1h28m27s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1663857 - Total duration: 1h28m27s - Times executed: 1 ]
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet WHERE EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;
Date: 2024-08-22 11:51:40 Duration: 1h28m27s Database: ctddev51 User: pub2 Application: pgAdmin 4 - CONN:1663857
5 1h25m17s 2 42m31s 42m45s 42m38s explain analyze with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm.nm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 22 14 1 42m31s 42m31s 15 1 42m45s 42m45s -
explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 15:09:02 Duration: 42m45s
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explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 14:12:53 Duration: 42m31s
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explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 14:12:48 Duration: 0ms
6 30m18s 1 30m18s 30m18s 30m18s explain analyze with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset where exists ( select ? from phenotype_term_reference ptr where initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...));Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 22 13 1 30m18s 30m18s -
explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P where EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C'));
Date: 2024-08-22 13:57:42 Duration: 30m18s
7 29m24s 1 29m24s 29m24s 29m24s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm.nm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?) as test;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 22 13 1 29m24s 29m24s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 13:07:40 Duration: 29m24s
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 13:07:35 Duration: 0ms
8 20m43s 1 20m43s 20m43s 20m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 19 15 1 20m43s 20m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
9 20m39s 1 20m39s 20m39s 20m39s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset where exists ( select ? from phenotype_term_reference ptr where initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...))) as tetramercount;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 22 12 1 20m39s 20m39s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P where EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C')) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;
Date: 2024-08-22 12:23:52 Duration: 20m39s
10 10m43s 1 10m43s 10m43s 10m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 19 14 1 10m43s 10m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
11 9m39s 1 9m39s 9m39s 9m39s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where gcr.chem_id = chemterm.id and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id and gcr.chem_id = cdr.chem_id and gcr.gene_id = gdr.gene_id and ptr.term_id = cdr.chem_id and ptr.phenotype_id = g2g.go_term_id and g2g.gene_id = gcr.gene_id and cdr.source_cd = ? and gdr.source_cd in (...) and ptr.source_cd in (...) and chemterm.nm = ? and geneterm.nm = ? and phenotypeterm.nm = ? and diseaseterm.nm = ?) as test;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 19 13 1 9m39s 9m39s -
select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;
Date: 2024-08-19 13:21:41 Duration: 9m39s
12 9m9s 1 9m9s 9m9s 9m9s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? ) select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from initialtetramerset, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.id = initialtetramerset.chem_id and geneterm.id = initialtetramerset.gene_id and phenotypeterm.id = initialtetramerset.phenotype_id and diseaseterm.id = initialtetramerset.disease_id) as tetramercount;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 21 16 1 9m9s 9m9s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;
Date: 2024-08-21 16:45:14 Duration: 9m9s
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;
Date: 2024-08-21 16:45:13 Duration: 0ms Database: ctddev51 User: pub2 Application: pgAdmin 4 - CONN:5020715
13 9m 1 9m 9m 9m select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 19 16 1 9m 9m -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
14 8m57s 1 8m57s 8m57s 8m57s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and object_type_id = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 20 10 1 8m57s 8m57s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-20 10:08:17 Duration: 8m57s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-20 10:08:16 Duration: 0ms
15 8m54s 1 8m54s 8m54s 8m54s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 19 15 1 8m54s 8m54s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
16 8m53s 1 8m53s 8m53s 8m53s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 19 15 1 8m53s 8m53s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
17 4m29s 132 1s36ms 3s44ms 2s44ms select pg_database_size(datname::text) from pg_catalog.pg_database where datistemplate = false and datname = ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 20 10 1 1s619ms 1s619ms Aug 22 13 6 12s355ms 2s59ms 14 4 8s742ms 2s185ms 15 8 16s182ms 2s22ms 16 5 11s583ms 2s316ms 17 9 17s285ms 1s920ms 18 10 18s6ms 1s800ms 19 8 18s929ms 2s366ms 20 10 24s286ms 2s428ms 21 6 10s968ms 1s828ms 22 8 15s661ms 1s957ms 23 5 12s844ms 2s568ms Aug 23 00 6 14s37ms 2s339ms 01 11 22s336ms 2s30ms 02 7 11s425ms 1s632ms 03 9 17s364ms 1s929ms 04 12 25s553ms 2s129ms 05 6 9s436ms 1s572ms 06 1 1s207ms 1s207ms [ User: zbx_monitor - Total duration: 2m53s - Times executed: 84 ]
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SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'postgres';
Date: 2024-08-23 01:39:05 Duration: 3s44ms Bind query: yes
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SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'postgres';
Date: 2024-08-22 22:04:05 Duration: 3s22ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'postgres';
Date: 2024-08-22 17:59:05 Duration: 3s12ms Database: postgres User: zbx_monitor Bind query: yes
18 3m21s 14 1s222ms 31s721ms 14s359ms select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select count(*) from pg_catalog.pg_stat_activity where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Total", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Active", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Idle") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(xact_commit) + sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Transactions", ( select sum(xact_commit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Commits", ( select sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Rollbacks") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_inserted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Inserts", ( select sum(tup_updated) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Updates", ( select sum(tup_deleted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Deletes") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_fetched) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Fetched", ( select sum(tup_returned) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Returned") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(blks_read) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Reads", ( select sum(blks_hit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Hits") t;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 22 13 2 2s713ms 1s356ms 14 4 25s708ms 6s427ms 15 1 13s876ms 13s876ms 16 4 1m44s 26s214ms 17 3 53s876ms 17s958ms [ User: pub1 - Total duration: 1s222ms - Times executed: 1 ]
[ Application: pgAdmin 4 - DB:ctddev51 - Total duration: 1s222ms - Times executed: 1 ]
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 16:00:34 Duration: 31s721ms
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 17:30:29 Duration: 26s125ms
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 17:21:28 Duration: 25s673ms
19 2m13s 52 1s28ms 6s26ms 2s575ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 18 05 2 4s439ms 2s219ms Aug 19 05 2 4s368ms 2s184ms Aug 20 05 2 4s436ms 2s218ms Aug 21 05 2 4s505ms 2s252ms 17 4 9s341ms 2s335ms 18 6 13s802ms 2s300ms Aug 22 05 2 4s579ms 2s289ms 12 2 4s508ms 2s254ms 13 4 14s58ms 3s514ms 14 8 24s879ms 3s109ms Aug 23 05 2 6s604ms 3s302ms 10 4 9s742ms 2s435ms 13 2 4s809ms 2s404ms 17 8 19s28ms 2s378ms Aug 24 05 2 4s846ms 2s423ms [ User: pubeu - Total duration: 1m42s - Times executed: 26 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-22 14:55:32 Duration: 6s26ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-22 13:57:32 Duration: 5s751ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-22 13:54:45 Duration: 5s571ms Database: ctddev51 User: pubeu Bind query: yes
20 2m11s 1 2m11s 2m11s 2m11s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset) as tetramercount;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 22 10 1 2m11s 2m11s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;
Date: 2024-08-22 10:16:10 Duration: 2m11s
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 132 4m29s 1s36ms 3s44ms 2s44ms select pg_database_size(datname::text) from pg_catalog.pg_database where datistemplate = false and datname = ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 20 10 1 1s619ms 1s619ms Aug 22 13 6 12s355ms 2s59ms 14 4 8s742ms 2s185ms 15 8 16s182ms 2s22ms 16 5 11s583ms 2s316ms 17 9 17s285ms 1s920ms 18 10 18s6ms 1s800ms 19 8 18s929ms 2s366ms 20 10 24s286ms 2s428ms 21 6 10s968ms 1s828ms 22 8 15s661ms 1s957ms 23 5 12s844ms 2s568ms Aug 23 00 6 14s37ms 2s339ms 01 11 22s336ms 2s30ms 02 7 11s425ms 1s632ms 03 9 17s364ms 1s929ms 04 12 25s553ms 2s129ms 05 6 9s436ms 1s572ms 06 1 1s207ms 1s207ms [ User: zbx_monitor - Total duration: 2m53s - Times executed: 84 ]
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SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'postgres';
Date: 2024-08-23 01:39:05 Duration: 3s44ms Bind query: yes
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SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'postgres';
Date: 2024-08-22 22:04:05 Duration: 3s22ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = 'postgres';
Date: 2024-08-22 17:59:05 Duration: 3s12ms Database: postgres User: zbx_monitor Bind query: yes
2 52 2m13s 1s28ms 6s26ms 2s575ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 18 05 2 4s439ms 2s219ms Aug 19 05 2 4s368ms 2s184ms Aug 20 05 2 4s436ms 2s218ms Aug 21 05 2 4s505ms 2s252ms 17 4 9s341ms 2s335ms 18 6 13s802ms 2s300ms Aug 22 05 2 4s579ms 2s289ms 12 2 4s508ms 2s254ms 13 4 14s58ms 3s514ms 14 8 24s879ms 3s109ms Aug 23 05 2 6s604ms 3s302ms 10 4 9s742ms 2s435ms 13 2 4s809ms 2s404ms 17 8 19s28ms 2s378ms Aug 24 05 2 4s846ms 2s423ms [ User: pubeu - Total duration: 1m42s - Times executed: 26 ]
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-22 14:55:32 Duration: 6s26ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-22 13:57:32 Duration: 5s751ms Database: ctddev51 User: pubeu Bind query: yes
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WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '589967' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 2 ORDER BY sn.path;
Date: 2024-08-22 13:54:45 Duration: 5s571ms Database: ctddev51 User: pubeu Bind query: yes
3 40 1m18s 1s21ms 3s5ms 1s958ms select row_to_json(t) from ( select case when pg_is_in_recovery() then ? else pg_wal_lsn_diff (pg_current_wal_lsn (), ?) end as write, case when not pg_is_in_recovery() then ? else pg_wal_lsn_diff (pg_last_wal_receive_lsn (), ?) end as receive, count(*) from pg_ls_waldir () as count) t;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 22 13 1 1s50ms 1s50ms 14 1 2s948ms 2s948ms 15 3 6s761ms 2s253ms 16 2 4s47ms 2s23ms 17 2 3s588ms 1s794ms 18 3 6s217ms 2s72ms 19 2 4s738ms 2s369ms 20 2 3s306ms 1s653ms 21 2 4s788ms 2s394ms 22 3 5s333ms 1s777ms 23 4 8s701ms 2s175ms Aug 23 00 4 6s110ms 1s527ms 01 1 1s925ms 1s925ms 02 3 5s983ms 1s994ms 03 1 1s35ms 1s35ms 04 3 5s918ms 1s972ms 05 3 5s876ms 1s958ms [ User: zbx_monitor - Total duration: 46s247ms - Times executed: 24 ]
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SELECT row_to_json(T) FROM ( SELECT CASE WHEN pg_is_in_recovery() THEN 0 ELSE pg_wal_lsn_diff (pg_current_wal_lsn (), '0/00000000') END AS WRITE, CASE WHEN NOT pg_is_in_recovery() THEN 0 ELSE pg_wal_lsn_diff (pg_last_wal_receive_lsn (), '0/00000000') END AS RECEIVE, count(*) FROM pg_ls_waldir () AS COUNT) T;
Date: 2024-08-22 23:32:44 Duration: 3s5ms Bind query: yes
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SELECT row_to_json(T) FROM ( SELECT CASE WHEN pg_is_in_recovery() THEN 0 ELSE pg_wal_lsn_diff (pg_current_wal_lsn (), '0/00000000') END AS WRITE, CASE WHEN NOT pg_is_in_recovery() THEN 0 ELSE pg_wal_lsn_diff (pg_last_wal_receive_lsn (), '0/00000000') END AS RECEIVE, count(*) FROM pg_ls_waldir () AS COUNT) T;
Date: 2024-08-22 14:17:44 Duration: 2s948ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT row_to_json(T) FROM ( SELECT CASE WHEN pg_is_in_recovery() THEN 0 ELSE pg_wal_lsn_diff (pg_current_wal_lsn (), '0/00000000') END AS WRITE, CASE WHEN NOT pg_is_in_recovery() THEN 0 ELSE pg_wal_lsn_diff (pg_last_wal_receive_lsn (), '0/00000000') END AS RECEIVE, count(*) FROM pg_ls_waldir () AS COUNT) T;
Date: 2024-08-22 21:42:44 Duration: 2s754ms Database: postgres User: zbx_monitor Bind query: yes
4 24 1m21s 1s216ms 9s606ms 3s387ms select t.id, t.object_type_id, t.acc_txt, t.acc_db_cd, t.nm, t.nm_sort, t.secondary_nm, t.description, t.note, l.nm from pub2.term t, pub2.term_label l where t.object_type_id = ? and t.id = l.term_id;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 21 10 16 56s48ms 3s503ms 11 8 25s247ms 3s155ms [ User: editeu - Total duration: 1m21s - Times executed: 24 ]
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-08-21 10:41:45 Duration: 9s606ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-08-21 10:58:32 Duration: 8s913ms Database: ctddev51 User: editeu Bind query: yes
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select t.ID, t.OBJECT_TYPE_ID, t.ACC_TXT, t.ACC_DB_CD, t.NM, t.NM_SORT, t.SECONDARY_NM, t.DESCRIPTION, t.NOTE, l.NM from pub2.TERM t, pub2.TERM_LABEL l where t.OBJECT_TYPE_ID = 4 and t.id = l.TERM_ID;
Date: 2024-08-21 11:09:01 Duration: 5s933ms Database: ctddev51 User: editeu Bind query: yes
5 16 36s220ms 1s976ms 4s145ms 2s263ms select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 21 05 8 16s57ms 2s7ms Aug 23 05 8 20s162ms 2s520ms [ User: pubeu - Total duration: 6s229ms - Times executed: 3 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2071900');
Date: 2024-08-23 05:48:59 Duration: 4s145ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2071900');
Date: 2024-08-23 05:49:10 Duration: 2s748ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2071900');
Date: 2024-08-23 05:49:07 Duration: 2s381ms Bind query: yes
6 15 22s915ms 1s76ms 2s532ms 1s527ms select count(*) from pg_catalog.pg_stat_all_tables where (n_dead_tup / (n_live_tup + n_dead_tup)::float8) > ?.? and (n_live_tup + n_dead_tup) > ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 22 13 1 1s103ms 1s103ms 14 2 2s679ms 1s339ms 18 1 1s864ms 1s864ms 21 3 5s15ms 1s671ms 22 1 1s282ms 1s282ms 23 2 4s40ms 2s20ms Aug 23 00 2 2s958ms 1s479ms 02 1 1s403ms 1s403ms 03 1 1s117ms 1s117ms 04 1 1s450ms 1s450ms [ User: zbx_monitor - Total duration: 14s856ms - Times executed: 10 ]
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SELECT count(*) FROM pg_catalog.pg_stat_all_tables WHERE (n_dead_tup / (n_live_tup + n_dead_tup)::float8) > 0.2 AND (n_live_tup + n_dead_tup) > 50;
Date: 2024-08-22 23:19:09 Duration: 2s532ms Bind query: yes
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SELECT count(*) FROM pg_catalog.pg_stat_all_tables WHERE (n_dead_tup / (n_live_tup + n_dead_tup)::float8) > 0.2 AND (n_live_tup + n_dead_tup) > 50;
Date: 2024-08-22 21:31:06 Duration: 2s529ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT count(*) FROM pg_catalog.pg_stat_all_tables WHERE (n_dead_tup / (n_live_tup + n_dead_tup)::float8) > 0.2 AND (n_live_tup + n_dead_tup) > 50;
Date: 2024-08-22 18:22:06 Duration: 1s864ms Database: ctddev51 User: zbx_monitor Bind query: yes
7 14 3m21s 1s222ms 31s721ms 14s359ms select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select count(*) from pg_catalog.pg_stat_activity where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Total", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Active", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Idle") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(xact_commit) + sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Transactions", ( select sum(xact_commit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Commits", ( select sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Rollbacks") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_inserted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Inserts", ( select sum(tup_updated) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Updates", ( select sum(tup_deleted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Deletes") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_fetched) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Fetched", ( select sum(tup_returned) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Returned") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(blks_read) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Reads", ( select sum(blks_hit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Hits") t;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 22 13 2 2s713ms 1s356ms 14 4 25s708ms 6s427ms 15 1 13s876ms 13s876ms 16 4 1m44s 26s214ms 17 3 53s876ms 17s958ms [ User: pub1 - Total duration: 1s222ms - Times executed: 1 ]
[ Application: pgAdmin 4 - DB:ctddev51 - Total duration: 1s222ms - Times executed: 1 ]
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 16:00:34 Duration: 31s721ms
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 17:30:29 Duration: 26s125ms
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 17:21:28 Duration: 25s673ms
8 14 28s691ms 1s149ms 4s117ms 2s49ms select fg.nm fromgenesymbol, fg.acc_txt fromgeneacc, tg.nm togenesymbol, tg.acc_txt togeneacc, ft.nm fromtaxonnm, ft.secondary_nm fromtaxoncommonnm, ft.acc_txt fromtaxonacc, tt.nm totaxonnm, tt.secondary_nm totaxoncommonnm, tt.acc_txt totaxonacc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( select string_agg(ggt.throughput_txt, ? order by ggt.throughput_txt) from gene_gene_ref_throughput ggt where ggt.gene_gene_reference_id = ggr.id) throughput, count(*) over () fullrowcount from gene_gene_reference ggr inner join term fg on ggr.from_gene_id = fg.id inner join term tg on ggr.to_gene_id = tg.id inner join term ft on ggr.from_taxon_id = ft.id inner join term tt on ggr.to_taxon_id = tt.id where ggr.reference_id = ? order by fg.nm_sort, tg.nm_sort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 18 05 2 2s611ms 1s305ms Aug 19 05 2 3s243ms 1s621ms Aug 20 05 2 2s900ms 1s450ms Aug 21 05 2 5s642ms 2s821ms Aug 22 05 2 2s721ms 1s360ms Aug 23 05 2 7s607ms 3s803ms Aug 24 05 2 3s963ms 1s981ms [ User: pubeu - Total duration: 5s399ms - Times executed: 3 ]
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-23 05:49:32 Duration: 4s117ms Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-23 05:49:36 Duration: 3s489ms Bind query: yes
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SELECT /* ReferenceGeneGeneIxnsDAO */ fg.nm fromGeneSymbol, fg.acc_txt fromGeneAcc, tg.nm toGeneSymbol, tg.acc_txt toGeneAcc, ft.nm fromTaxonNm, ft.secondary_nm fromTaxonCommonNm, ft.acc_txt fromTaxonAcc, tt.nm toTaxonNm, tt.secondary_nm toTaxonCommonNm, tt.acc_txt toTaxonAcc, ggr.experimental_sys_nm, ggr.experimental_sys_type, ( SELECT STRING_AGG(ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt) FROM gene_gene_ref_throughput ggt WHERE ggt.gene_gene_reference_id = ggr.id) throughput, COUNT(*) OVER () fullRowCount FROM gene_gene_reference ggr INNER JOIN term fg ON ggr.from_gene_id = fg.id INNER JOIN term tg ON ggr.to_gene_id = tg.id INNER JOIN term ft ON ggr.from_taxon_id = ft.id INNER JOIN term tt ON ggr.to_taxon_id = tt.id WHERE ggr.reference_id = '111363' ORDER BY fg.nm_sort, tg.nm_sort LIMIT 50;
Date: 2024-08-21 05:48:21 Duration: 2s871ms Bind query: yes
9 9 12s653ms 1s78ms 1s993ms 1s405ms select json_object_agg(coalesce(datname, ?), row_to_json(t)) from ( select datname, numbackends as numbackends, xact_commit as xact_commit, xact_rollback as xact_rollback, blks_read as blks_read, blks_hit as blks_hit, tup_returned as tup_returned, tup_fetched as tup_fetched, tup_inserted as tup_inserted, tup_updated as tup_updated, tup_deleted as tup_deleted, conflicts as conflicts, temp_files as temp_files, temp_bytes as temp_bytes, deadlocks as deadlocks, coalesce(checksum_failures, ?) as checksum_failures, blk_read_time as blk_read_time, blk_write_time as blk_write_time from pg_catalog.pg_stat_database) t;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 20 10 1 1s185ms 1s185ms Aug 22 14 1 1s494ms 1s494ms 16 1 1s78ms 1s78ms 23 3 3s800ms 1s266ms Aug 23 00 1 1s500ms 1s500ms 01 1 1s600ms 1s600ms 03 1 1s993ms 1s993ms [ User: zbx_monitor - Total duration: 10s258ms - Times executed: 7 ]
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SELECT json_object_agg(coalesce(datname, 'null'), row_to_json(T)) FROM ( SELECT datname, numbackends as numbackends, xact_commit as xact_commit, xact_rollback as xact_rollback, blks_read as blks_read, blks_hit as blks_hit, tup_returned as tup_returned, tup_fetched as tup_fetched, tup_inserted as tup_inserted, tup_updated as tup_updated, tup_deleted as tup_deleted, conflicts as conflicts, temp_files as temp_files, temp_bytes as temp_bytes, deadlocks as deadlocks, COALESCE(checksum_failures, 0) as checksum_failures, blk_read_time as blk_read_time, blk_write_time as blk_write_time FROM pg_catalog.pg_stat_database) T;
Date: 2024-08-23 03:23:33 Duration: 1s993ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT json_object_agg(coalesce(datname, 'null'), row_to_json(T)) FROM ( SELECT datname, numbackends as numbackends, xact_commit as xact_commit, xact_rollback as xact_rollback, blks_read as blks_read, blks_hit as blks_hit, tup_returned as tup_returned, tup_fetched as tup_fetched, tup_inserted as tup_inserted, tup_updated as tup_updated, tup_deleted as tup_deleted, conflicts as conflicts, temp_files as temp_files, temp_bytes as temp_bytes, deadlocks as deadlocks, COALESCE(checksum_failures, 0) as checksum_failures, blk_read_time as blk_read_time, blk_write_time as blk_write_time FROM pg_catalog.pg_stat_database) T;
Date: 2024-08-23 01:55:33 Duration: 1s600ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT json_object_agg(coalesce(datname, 'null'), row_to_json(T)) FROM ( SELECT datname, numbackends as numbackends, xact_commit as xact_commit, xact_rollback as xact_rollback, blks_read as blks_read, blks_hit as blks_hit, tup_returned as tup_returned, tup_fetched as tup_fetched, tup_inserted as tup_inserted, tup_updated as tup_updated, tup_deleted as tup_deleted, conflicts as conflicts, temp_files as temp_files, temp_bytes as temp_bytes, deadlocks as deadlocks, COALESCE(checksum_failures, 0) as checksum_failures, blk_read_time as blk_read_time, blk_write_time as blk_write_time FROM pg_catalog.pg_stat_database) T;
Date: 2024-08-23 00:13:32 Duration: 1s500ms Database: postgres User: zbx_monitor Bind query: yes
10 9 12s404ms 1s58ms 1s625ms 1s378ms select row_to_json(t) from ( select sum(numbackends) as numbackends, sum(xact_commit) as xact_commit, sum(xact_rollback) as xact_rollback, sum(blks_read) as blks_read, sum(blks_hit) as blks_hit, sum(tup_returned) as tup_returned, sum(tup_fetched) as tup_fetched, sum(tup_inserted) as tup_inserted, sum(tup_updated) as tup_updated, sum(tup_deleted) as tup_deleted, sum(conflicts) as conflicts, sum(temp_files) as temp_files, sum(temp_bytes) as temp_bytes, sum(deadlocks) as deadlocks, sum(coalesce(checksum_failures, ?)) as checksum_failures, sum(blk_read_time) as blk_read_time, sum(blk_write_time) as blk_write_time from pg_catalog.pg_stat_database) t;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 22 14 1 1s103ms 1s103ms 15 1 1s369ms 1s369ms 19 2 3s104ms 1s552ms 20 2 2s848ms 1s424ms 22 1 1s58ms 1s58ms Aug 23 03 1 1s609ms 1s609ms 05 1 1s309ms 1s309ms [ User: zbx_monitor - Total duration: 8s411ms - Times executed: 6 ]
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SELECT row_to_json(T) FROM ( SELECT sum(numbackends) as numbackends, sum(xact_commit) as xact_commit, sum(xact_rollback) as xact_rollback, sum(blks_read) as blks_read, sum(blks_hit) as blks_hit, sum(tup_returned) as tup_returned, sum(tup_fetched) as tup_fetched, sum(tup_inserted) as tup_inserted, sum(tup_updated) as tup_updated, sum(tup_deleted) as tup_deleted, sum(conflicts) as conflicts, sum(temp_files) as temp_files, sum(temp_bytes) as temp_bytes, sum(deadlocks) as deadlocks, sum(COALESCE(checksum_failures, 0)) as checksum_failures, sum(blk_read_time) as blk_read_time, sum(blk_write_time) as blk_write_time FROM pg_catalog.pg_stat_database) T;
Date: 2024-08-22 19:50:32 Duration: 1s625ms Bind query: yes
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SELECT row_to_json(T) FROM ( SELECT sum(numbackends) as numbackends, sum(xact_commit) as xact_commit, sum(xact_rollback) as xact_rollback, sum(blks_read) as blks_read, sum(blks_hit) as blks_hit, sum(tup_returned) as tup_returned, sum(tup_fetched) as tup_fetched, sum(tup_inserted) as tup_inserted, sum(tup_updated) as tup_updated, sum(tup_deleted) as tup_deleted, sum(conflicts) as conflicts, sum(temp_files) as temp_files, sum(temp_bytes) as temp_bytes, sum(deadlocks) as deadlocks, sum(COALESCE(checksum_failures, 0)) as checksum_failures, sum(blk_read_time) as blk_read_time, sum(blk_write_time) as blk_write_time FROM pg_catalog.pg_stat_database) T;
Date: 2024-08-23 03:59:47 Duration: 1s609ms Database: postgres User: zbx_monitor Bind query: yes
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SELECT row_to_json(T) FROM ( SELECT sum(numbackends) as numbackends, sum(xact_commit) as xact_commit, sum(xact_rollback) as xact_rollback, sum(blks_read) as blks_read, sum(blks_hit) as blks_hit, sum(tup_returned) as tup_returned, sum(tup_fetched) as tup_fetched, sum(tup_inserted) as tup_inserted, sum(tup_updated) as tup_updated, sum(tup_deleted) as tup_deleted, sum(conflicts) as conflicts, sum(temp_files) as temp_files, sum(temp_bytes) as temp_bytes, sum(deadlocks) as deadlocks, sum(COALESCE(checksum_failures, 0)) as checksum_failures, sum(blk_read_time) as blk_read_time, sum(blk_write_time) as blk_write_time FROM pg_catalog.pg_stat_database) T;
Date: 2024-08-22 20:39:31 Duration: 1s599ms Database: postgres User: zbx_monitor Bind query: yes
11 8 10s823ms 1s291ms 1s471ms 1s352ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 18 05 1 1s291ms 1s291ms Aug 19 05 1 1s292ms 1s292ms Aug 20 05 1 1s315ms 1s315ms Aug 21 05 1 1s333ms 1s333ms Aug 22 05 1 1s331ms 1s331ms 14 1 1s441ms 1s441ms Aug 23 05 1 1s347ms 1s347ms Aug 24 05 1 1s471ms 1s471ms [ User: pubeu - Total duration: 2s912ms - Times executed: 2 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-08-24 05:48:44 Duration: 1s471ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-08-22 14:45:11 Duration: 1s441ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-08-23 05:50:23 Duration: 1s347ms Bind query: yes
12 7 29s969ms 3s895ms 5s847ms 4s281ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 18 05 1 3s895ms 3s895ms Aug 19 05 1 3s916ms 3s916ms Aug 20 05 1 3s977ms 3s977ms Aug 21 05 1 3s929ms 3s929ms Aug 22 05 1 4s45ms 4s45ms Aug 23 05 1 5s847ms 5s847ms Aug 24 05 1 4s357ms 4s357ms [ User: pubeu - Total duration: 24s122ms - Times executed: 6 ]
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-23 05:47:41 Duration: 5s847ms Bind query: yes
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-24 05:47:21 Duration: 4s357ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-22 05:47:19 Duration: 4s45ms Database: ctddev51 User: pubeu Bind query: yes
13 7 29s617ms 4s100ms 4s353ms 4s231ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 18 05 1 4s100ms 4s100ms Aug 19 05 1 4s305ms 4s305ms Aug 20 05 1 4s190ms 4s190ms Aug 21 05 1 4s194ms 4s194ms Aug 22 05 1 4s162ms 4s162ms Aug 23 05 1 4s353ms 4s353ms Aug 24 05 1 4s309ms 4s309ms [ User: pubeu - Total duration: 8s291ms - Times executed: 2 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-23 05:50:14 Duration: 4s353ms Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-24 05:48:37 Duration: 4s309ms Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-19 05:48:30 Duration: 4s305ms Bind query: yes
14 7 29s222ms 3s742ms 5s657ms 4s174ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 18 05 1 3s742ms 3s742ms Aug 19 05 1 3s850ms 3s850ms Aug 20 05 1 3s848ms 3s848ms Aug 21 05 1 3s901ms 3s901ms Aug 22 05 1 3s973ms 3s973ms Aug 23 05 1 5s657ms 5s657ms Aug 24 05 1 4s248ms 4s248ms [ User: pubeu - Total duration: 5s657ms - Times executed: 1 ]
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-23 05:47:47 Duration: 5s657ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-24 05:47:26 Duration: 4s248ms Bind query: yes
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-22 05:47:24 Duration: 3s973ms Bind query: yes
15 7 27s317ms 2s4ms 6s219ms 3s902ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 18 05 1 3s933ms 3s933ms Aug 19 05 1 3s982ms 3s982ms Aug 20 05 1 3s869ms 3s869ms Aug 21 05 1 3s392ms 3s392ms Aug 22 05 1 3s916ms 3s916ms Aug 23 05 1 6s219ms 6s219ms Aug 24 05 1 2s4ms 2s4ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-23 05:51:03 Duration: 6s219ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:55 Duration: 3s982ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-18 05:48:47 Duration: 3s933ms Bind query: yes
16 7 26s17ms 3s248ms 5s206ms 3s716ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select tp.term_id from term_pathway tp where upper(tp.pathway_nm) like ? and tp.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 18 05 1 3s248ms 3s248ms Aug 19 05 1 3s345ms 3s345ms Aug 20 05 1 3s428ms 3s428ms Aug 21 05 1 3s416ms 3s416ms Aug 22 05 1 3s522ms 3s522ms Aug 23 05 1 5s206ms 5s206ms Aug 24 05 1 3s848ms 3s848ms -
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-08-23 05:48:08 Duration: 5s206ms Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-08-24 05:47:34 Duration: 3s848ms Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-08-22 05:47:32 Duration: 3s522ms Bind query: yes
17 7 25s498ms 1s987ms 4s84ms 3s642ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 18 05 1 3s970ms 3s970ms Aug 19 05 1 4s67ms 4s67ms Aug 20 05 1 3s911ms 3s911ms Aug 21 05 1 3s445ms 3s445ms Aug 22 05 1 4s32ms 4s32ms Aug 23 05 1 4s84ms 4s84ms Aug 24 05 1 1s987ms 1s987ms [ User: pubeu - Total duration: 3s970ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-23 05:50:56 Duration: 4s84ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-19 05:48:50 Duration: 4s67ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-08-22 05:48:48 Duration: 4s32ms Bind query: yes
18 7 19s691ms 1s342ms 8s274ms 2s813ms select g.id geneid, g.acc_txt acc, g.nm nm, g.nm nmhtml, g.secondary_nm secondarynm, g.has_chems haschems, g.has_diseases hasdiseases, g.has_exposures hasexposures, g.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term g where g.id in ( select gcr.gene_id from gene_chem_reference gcr where gcr.taxon_id = any (array ( select dp.descendant_object_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id where upper(t.nm) like ? and t.object_type_id = ?)) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?))) order by g.nm_sort, g.id limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 18 05 1 1s566ms 1s566ms Aug 19 05 1 1s609ms 1s609ms Aug 20 05 1 1s342ms 1s342ms Aug 21 05 1 3s908ms 3s908ms Aug 22 05 1 1s445ms 1s445ms Aug 23 05 1 8s274ms 8s274ms Aug 24 05 1 1s544ms 1s544ms -
SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-23 05:48:01 Duration: 8s274ms Bind query: yes
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-21 05:47:30 Duration: 3s908ms Bind query: yes
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SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Name */ dp.descendant_object_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id WHERE UPPER(t.nm) LIKE 'FELIS CATUS' AND t.object_type_id = 1)) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'))) ORDER BY g.nm_sort, g.id LIMIT 50;
Date: 2024-08-19 05:47:28 Duration: 1s609ms Bind query: yes
19 7 17s286ms 2s168ms 3s367ms 2s469ms select distinct phenotypeterm.nm as gonm, phenotypeterm.nm_html as gonmhtml, phenotypeterm.acc_txt as goacc, diseaseterm.nm as diseasenm, diseaseterm.nm_html as diseasenmhtml, diseaseterm.acc_txt as diseaseacc, diseaseterm.acc_db_cd as diseaseaccdbcd, chemterm.nm as chemnm, chemterm.nm_html as chemnmhtml, chemterm.acc_txt as chemacc, geneterm.nm as genesymbol, geneterm.nm_html as genesymbolhtml, geneterm.acc_txt as geneacc, count(*) over () fullrowcount from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term phenotypeterm, term diseaseterm, term geneterm, term chemterm where viachemptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and viageneptr.via_term_id in ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and upper(baseterm.nm) like ?) and phenotypeterm.id = any (array ( select baseterm.id from term baseterm where baseterm.object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and viachemptr.phenotype_id = phenotypeterm.id and viachemptr.term_object_type_id = ? and viachemptr.term_id = diseaseterm.id and viachemptr.via_term_object_type_id = ? and viachemptr.via_term_id = chemterm.id and viachemptr.term_id = viageneptr.term_id and viachemptr.phenotype_id = viageneptr.phenotype_id and viageneptr.via_term_object_type_id = ? and viageneptr.via_term_id = geneterm.id and exists ( select ? from gene_chem_reference where gene_id = geneterm.id and chem_id = chemterm.id) group by phenotypeterm.nm, phenotypeterm.nm_html, phenotypeterm.acc_txt, diseaseterm.nm, diseaseterm.nm_html, diseaseterm.acc_txt, diseaseterm.acc_db_cd, chemterm.nm, chemterm.nm_html, chemterm.acc_txt, geneterm.nm, geneterm.nm_html, geneterm.acc_txt order by chemterm.nm limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 18 05 1 2s172ms 2s172ms Aug 19 05 1 2s168ms 2s168ms Aug 20 05 1 2s246ms 2s246ms Aug 21 05 1 2s234ms 2s234ms Aug 22 05 1 2s432ms 2s432ms Aug 23 05 1 3s367ms 3s367ms Aug 24 05 1 2s664ms 2s664ms -
select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-23 05:51:12 Duration: 3s367ms Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-24 05:49:03 Duration: 2s664ms Bind query: yes
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select distinct phenotypeTerm.nm AS goNm, phenotypeTerm.nm_html AS goNmHtml, phenotypeTerm.acc_txt AS goAcc, diseaseTerm.nm AS diseaseNm, diseaseTerm.nm_html AS diseaseNmHtml, diseaseTerm.acc_txt AS diseaseAcc, diseaseTerm.acc_db_cd AS diseaseAccDbCd, chemTerm.nm AS chemNm, chemTerm.nm_html AS chemNmHtml, chemTerm.acc_txt AS chemAcc, geneTerm.nm AS geneSymbol, geneTerm.nm_html AS geneSymbolHtml, geneTerm.acc_txt AS geneAcc, COUNT(*) OVER () fullRowCount from PHENOTYPE_TERM_REFERENCE viaChemPTR, PHENOTYPE_TERM_REFERENCE viaGenePTR, TERM phenotypeTerm, TERM diseaseTerm, TERM geneTerm, TERM chemTerm where viaChemPTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC') and viaGenePTR.via_term_id IN ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper(baseTerm.nm) LIKE 'BCL2') and phenotypeTerm.id = ANY (ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_object_type_id = 3 and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_object_type_id = 2 and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id) GROUP BY phenotypeTerm.nm, phenotypeTerm.nm_html, phenotypeTerm.acc_txt, diseaseTerm.nm, diseaseTerm.nm_html, diseaseTerm.acc_txt, diseaseTerm.acc_db_cd, chemTerm.nm, chemTerm.nm_html, chemTerm.acc_txt, geneTerm.nm, geneTerm.nm_html, geneTerm.acc_txt order by chemTerm.nm LIMIT 50;
Date: 2024-08-22 05:48:57 Duration: 2s432ms Bind query: yes
20 7 14s131ms 1s342ms 4s946ms 2s18ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 18 05 1 1s352ms 1s352ms Aug 19 05 1 1s342ms 1s342ms Aug 20 05 1 1s362ms 1s362ms Aug 21 05 1 2s335ms 2s335ms Aug 22 05 1 1s351ms 1s351ms Aug 23 05 1 4s946ms 4s946ms Aug 24 05 1 1s440ms 1s440ms [ User: pubeu - Total duration: 8s644ms - Times executed: 3 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2071900') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2071900') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-08-23 05:50:46 Duration: 4s946ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2071900') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2071900') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-08-21 05:49:11 Duration: 2s335ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2071900') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2071900') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-08-24 05:48:54 Duration: 1s440ms Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 1d12h40m56s 1d12h40m56s 1d12h40m56s 1 1d12h40m56s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id)) as test;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Aug 21 23 1 1d12h40m56s 1d12h40m56s -
select count(*) from ( select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id)) as test;
Date: 2024-08-21 23:23:49 Duration: 1d12h40m56s
2 1d11h38m15s 1d11h38m15s 1d11h38m15s 1 1d11h38m15s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Aug 21 22 1 1d11h38m15s 1d11h38m15s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-21 22:27:32 Duration: 1d11h38m15s
3 2h5m44s 2h5m44s 2h5m44s 1 2h5m44s select count(*) from ( select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id) as test;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Aug 19 15 1 2h5m44s 2h5m44s [ User: pub1 - Total duration: 2h5m44s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1676782 - Total duration: 2h5m44s - Times executed: 1 ]
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select count(*) from ( SELECT distinct chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, -- ,GENE_GO_ANNOT g2g term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') -- AND gcr.gene_id = g2g.gene_id -- AND ptr.phenotype_id = g2g.go_term_id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id) as test;
Date: 2024-08-19 15:44:53 Duration: 2h5m44s Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:1676782
4 1h28m27s 1h28m27s 1h28m27s 1 1h28m27s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset where exists ( select ? from gene_chem_reference gcr where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id)) as tetramercount;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Aug 22 11 1 1h28m27s 1h28m27s [ User: pub2 - Total duration: 1h28m27s - Times executed: 1 ]
[ Application: pgAdmin 4 - CONN:1663857 - Total duration: 1h28m27s - Times executed: 1 ]
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet WHERE EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;
Date: 2024-08-22 11:51:40 Duration: 1h28m27s Database: ctddev51 User: pub2 Application: pgAdmin 4 - CONN:1663857
5 42m31s 42m45s 42m38s 2 1h25m17s explain analyze with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm.nm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Aug 22 14 1 42m31s 42m31s 15 1 42m45s 42m45s -
explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 15:09:02 Duration: 42m45s
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explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 14:12:53 Duration: 42m31s
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explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc';
Date: 2024-08-22 14:12:48 Duration: 0ms
6 30m18s 30m18s 30m18s 1 30m18s explain analyze with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset where exists ( select ? from phenotype_term_reference ptr where initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...));Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Aug 22 13 1 30m18s 30m18s -
explain analyze WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P where EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C'));
Date: 2024-08-22 13:57:42 Duration: 30m18s
7 29m24s 29m24s 29m24s 1 29m24s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id and chemterm.nm = ? ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga where initialtetramerset.gene_id = gcr.gene_id and initialtetramerset.chem_id = gcr.chem_id and initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...) and initialtetramerset.gene_id = gga.gene_id and initialtetramerset.phenotype_id = gga.go_term_id and gga.is_not is false and chemterm = ?) as test;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Aug 22 13 1 29m24s 29m24s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 13:07:40 Duration: 29m24s
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet, gene_chem_reference gcr, phenotype_term_reference ptr, gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C') -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: AND chemTerm = 'Zinc') as test;
Date: 2024-08-22 13:07:35 Duration: 0ms
8 20m43s 20m43s 20m43s 1 20m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Aug 19 15 1 20m43s 20m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:36 Duration: 20m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 15:04:35 Duration: 0ms
9 20m39s 20m39s 20m39s 1 20m39s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset where exists ( select ? from phenotype_term_reference ptr where initialtetramerset.chem_id = ptr.term_id and initialtetramerset.phenotype_id = ptr.phenotype_id and ptr.source_cd in (...))) as tetramercount;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Aug 22 12 1 20m39s 20m39s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P where EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ('C')) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;
Date: 2024-08-22 12:23:52 Duration: 20m39s
10 10m43s 10m43s 10m43s 1 10m43s select count(*) from ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id) as test;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Aug 19 14 1 10m43s 10m43s -
select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:12 Duration: 10m43s
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select count(*) from ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id) as test;
Date: 2024-08-19 14:01:11 Duration: 0ms
11 9m39s 9m39s 9m39s 1 9m39s select count(*) from ( select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, gene_go_annot g2g, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where gcr.chem_id = chemterm.id and gcr.gene_id = geneterm.id and cdr.disease_id = diseaseterm.id and ptr.phenotype_id = phenotypeterm.id and gcr.chem_id = cdr.chem_id and gcr.gene_id = gdr.gene_id and ptr.term_id = cdr.chem_id and ptr.phenotype_id = g2g.go_term_id and g2g.gene_id = gcr.gene_id and cdr.source_cd = ? and gdr.source_cd in (...) and ptr.source_cd in (...) and chemterm.nm = ? and geneterm.nm = ? and phenotypeterm.nm = ? and diseaseterm.nm = ?) as test;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Aug 19 13 1 9m39s 9m39s -
select count(*) from ( SELECT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM gene_chem_reference gcr, chem_disease_reference cdr, gene_disease_reference gdr, phenotype_term_reference ptr, GENE_GO_ANNOT g2g, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ('C', 'O') AND ptr.source_cd IN ('C') AND chemTerm.nm = 'Zinc' and geneTerm.nm = 'ACHE' and phenotypeTerm.nm = 'acetylcholine metabolic process' and diseaseTerm.nm = 'Alzheimer Disease') as test;
Date: 2024-08-19 13:21:41 Duration: 9m39s
12 9m9s 9m9s 9m9s 1 9m9s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? ) select distinct chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from initialtetramerset, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where chemterm.id = initialtetramerset.chem_id and geneterm.id = initialtetramerset.gene_id and phenotypeterm.id = initialtetramerset.phenotype_id and diseaseterm.id = initialtetramerset.disease_id) as tetramercount;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Aug 21 16 1 9m9s 9m9s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;
Date: 2024-08-21 16:45:14 Duration: 9m9s
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SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm FROM initialTetramerSet, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id -- AND EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- ------------------------------------------------- -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical ) AS tetramerCount;
Date: 2024-08-21 16:45:13 Duration: 0ms Database: ctddev51 User: pub2 Application: pgAdmin 4 - CONN:5020715
13 9m 9m 9m 1 9m select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Aug 19 16 1 9m 9m -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:02 Duration: 9m
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 16:44:01 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:4943641
14 8m57s 8m57s 8m57s 1 8m57s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and object_type_id = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and g2g.is_not is false and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Aug 20 10 1 8m57s 8m57s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-20 10:08:17 Duration: 8m57s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-20 10:08:16 Duration: 0ms
15 8m54s 8m54s 8m54s 1 8m54s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from term chemterm, term geneterm, term phenotypeterm, term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Aug 19 15 1 8m54s 8m54s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 8m54s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:34:40 Duration: 0ms Database: ctddev51 User: pub1 Application: pgAdmin 4 - CONN:8583072
16 8m53s 8m53s 8m53s 1 8m53s select chemterm.nm, geneterm.nm, phenotypeterm.nm, diseaseterm.nm from pub2.term chemterm, pub2.term geneterm, pub2.term phenotypeterm, pub2.term diseaseterm where (chemterm.id, geneterm.id, phenotypeterm.id, diseaseterm.id) in ( select distinct gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.gene_go_annot g2g, pub2.term chemterm where chemterm.nm = ? and chemterm.id = gcr.chem_id and gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.chem_id = ptr.term_id and ptr.source_cd in (...) and gcr.gene_id = gdr.gene_id and gdr.source_cd in (...) and gcr.gene_id = g2g.gene_id and cdr.disease_id = gdr.disease_id and ptr.phenotype_id = g2g.go_term_id);Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Aug 19 15 1 8m53s 8m53s -
select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 8m53s
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select chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm from pub2.term chemTerm, pub2.term geneTerm, pub2.term phenotypeTerm, pub2.term diseaseTerm WHERE (chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id) IN ( SELECT DISTINCT gcr.chem_id, gcr.gene_id, ptr.phenotype_id, cdr.disease_id FROM pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr, pub2.gene_disease_reference gdr, pub2.phenotype_term_reference ptr, pub2.GENE_GO_ANNOT g2g, pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ('C') AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ('C', 'O') AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id);
Date: 2024-08-19 15:52:15 Duration: 0ms
17 2m11s 2m11s 2m11s 1 2m11s select count(*) from ( with initialtetramerset as ( select viachemptr.via_term_id as chem_id, viageneptr.via_term_id as gene_id, viachemptr.phenotype_id as phenotype_id, viachemptr.term_id as disease_id, chemterm.nm as chemterm, geneterm.nm as geneterm, phenotypeterm.nm as phenotypeterm, diseaseterm.nm as diseaseterm from phenotype_term_reference viachemptr, phenotype_term_reference viageneptr, term chemterm, term geneterm, term phenotypeterm, term diseaseterm where viachemptr.term_id = viageneptr.term_id and viachemptr.term_object_type_id = ? and viachemptr.phenotype_id = viageneptr.phenotype_id and viachemptr.via_term_object_type_id = ? and viageneptr.via_term_object_type_id = ? and chemterm.id = viachemptr.via_term_id and geneterm.id = viageneptr.via_term_id and phenotypeterm.id = viachemptr.phenotype_id and diseaseterm.id = viachemptr.term_id ) select distinct initialtetramerset.chemterm, initialtetramerset.geneterm, initialtetramerset.phenotypeterm, initialtetramerset.diseaseterm from initialtetramerset) as tetramercount;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Aug 22 10 1 2m11s 2m11s -
SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id, -- chem viaGenePTR.via_term_id AS gene_id, -- gene viaChemPTR.phenotype_id AS phenotype_id, viaChemPTR.term_id AS disease_id, -- disease chemTerm.nm AS chemTerm, geneTerm.nm AS geneTerm, phenotypeTerm.nm AS phenotypeTerm, diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR, phenotype_term_reference viaGenePTR, term chemTerm, term geneTerm, term phenotypeTerm, term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id ) SELECT DISTINCT initialTetramerSet.chemTerm, initialTetramerSet.geneTerm, initialTetramerSet.phenotypeTerm, initialTetramerSet.diseaseTerm FROM initialTetramerSet -- WHERE EXISTS -- G-C -- ( -- select 1 -- from gene_chem_reference gcr -- where initialTetramerSet.gene_id = gcr.gene_id -- and initialTetramerSet.chem_id = gcr.chem_id -- ) -- AND EXISTS -- C-P -- ( -- select 1 -- from phenotype_term_reference ptr -- WHERE initialTetramerSet.chem_id = ptr.term_id -- and initialTetramerSet.phenotype_id = ptr.phenotype_id -- AND ptr.source_cd IN ( 'C' ) -- ) -- AND EXISTS -- G-P -- ( -- select 1 -- from gene_go_annot gga -- WHERE initialTetramerSet.gene_id = gga.gene_id -- and initialTetramerSet.phenotype_id = gga.go_term_id -- -- AND gga.is_not IS FALSE -- ) -- -- ------------------------------------------------- -- -- this takes seconds: -- AND chemTerm.nm = 'Zinc' -- AND chemTerm.object_type_id = 2 -- chemical -- ------------------------------------------------- -- this takes seconds: -- ------------------------------------------------- -- AND phenotypeTerm.nm_fts @@ to_tsquery('common.english_nostops','NEURON') -- AND phenotypeTerm.object_type_id = 5 ) AS tetramerCount;
Date: 2024-08-22 10:16:10 Duration: 2m11s
18 1s222ms 31s721ms 14s359ms 14 3m21s select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select count(*) from pg_catalog.pg_stat_activity where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Total", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Active", ( select count(*) from pg_catalog.pg_stat_activity where state = ? and datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Idle") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(xact_commit) + sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Transactions", ( select sum(xact_commit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Commits", ( select sum(xact_rollback) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Rollbacks") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_inserted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Inserts", ( select sum(tup_updated) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Updates", ( select sum(tup_deleted) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Deletes") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(tup_fetched) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Fetched", ( select sum(tup_returned) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Returned") t union all select ? as chart_name, pg_catalog.row_to_json(t) as chart_data from ( select ( select sum(blks_read) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Reads", ( select sum(blks_hit) from pg_catalog.pg_stat_database where datname = ( select datname from pg_catalog.pg_database where oid = ?)) AS "Hits") t;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Aug 22 13 2 2s713ms 1s356ms 14 4 25s708ms 6s427ms 15 1 13s876ms 13s876ms 16 4 1m44s 26s214ms 17 3 53s876ms 17s958ms [ User: pub1 - Total duration: 1s222ms - Times executed: 1 ]
[ Application: pgAdmin 4 - DB:ctddev51 - Total duration: 1s222ms - Times executed: 1 ]
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 16:00:34 Duration: 31s721ms
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 17:30:29 Duration: 26s125ms
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/*pga4dash*/ SELECT 'session_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Total", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'active' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Active", ( SELECT count(*) FROM pg_catalog.pg_stat_activity WHERE state = 'idle' AND datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Idle") t UNION ALL SELECT 'tps_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(xact_commit) + sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Transactions", ( SELECT sum(xact_commit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Commits", ( SELECT sum(xact_rollback) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Rollbacks") t UNION ALL SELECT 'ti_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_inserted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Inserts", ( SELECT sum(tup_updated) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Updates", ( SELECT sum(tup_deleted) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Deletes") t UNION ALL SELECT 'to_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(tup_fetched) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Fetched", ( SELECT sum(tup_returned) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Returned") t UNION ALL SELECT 'bio_stats' AS chart_name, pg_catalog.row_to_json(t) AS chart_data FROM ( SELECT ( SELECT sum(blks_read) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Reads", ( SELECT sum(blks_hit) FROM pg_catalog.pg_stat_database WHERE datname = ( SELECT datname FROM pg_catalog.pg_database WHERE oid = 484829)) AS "Hits") t;
Date: 2024-08-22 17:21:28 Duration: 25s673ms
19 3s895ms 5s847ms 4s281ms 7 29s969ms select gcr.ixn_id, null, null, null from gene_chem_reference gcr where gcr.gene_id = any (array (( select gd.gene_id from term t inner join dag_path dp on t.id = dp.ancestor_object_id inner join gene_disease gd on dp.descendant_object_id = gd.disease_id where upper(t.nm) like ? and t.object_type_id = ?))) and gcr.id in ( select gcra.gene_chem_reference_id from gene_chem_reference_axn gcra where (gcra.action_degree_type_nm = ?));Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Aug 18 05 1 3s895ms 3s895ms Aug 19 05 1 3s916ms 3s916ms Aug 20 05 1 3s977ms 3s977ms Aug 21 05 1 3s929ms 3s929ms Aug 22 05 1 4s45ms 4s45ms Aug 23 05 1 5s847ms 5s847ms Aug 24 05 1 4s357ms 4s357ms [ User: pubeu - Total duration: 24s122ms - Times executed: 6 ]
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-23 05:47:41 Duration: 5s847ms Bind query: yes
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-24 05:47:21 Duration: 4s357ms Database: ctddev51 User: pubeu Bind query: yes
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SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id, NULL, NULL, NULL FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterDiseaseWhereEquals.Name.Gene */ gd.gene_id FROM term t INNER JOIN dag_path dp ON t.id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(t.nm) LIKE 'ASTHMA' AND t.object_type_id = 3))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases'));
Date: 2024-08-22 05:47:19 Duration: 4s45ms Database: ctddev51 User: pubeu Bind query: yes
20 4s100ms 4s353ms 4s231ms 7 29s617ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Aug 18 05 1 4s100ms 4s100ms Aug 19 05 1 4s305ms 4s305ms Aug 20 05 1 4s190ms 4s190ms Aug 21 05 1 4s194ms 4s194ms Aug 22 05 1 4s162ms 4s162ms Aug 23 05 1 4s353ms 4s353ms Aug 24 05 1 4s309ms 4s309ms [ User: pubeu - Total duration: 8s291ms - Times executed: 2 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-23 05:50:14 Duration: 4s353ms Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-24 05:48:37 Duration: 4s309ms Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1291235)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2024-08-19 05:48:30 Duration: 4s305ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 62,545 Log entries
Events distribution
Key values
- 0 PANIC entries
- 466 FATAL entries
- 1083 ERROR entries
- 1 WARNING entries
Most Frequent Errors/Events
Key values
- 565 Max number of times the same event was reported
- 1,550 Total events found
Rank Times reported Error 1 565 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #1
Day Hour Count Aug 19 13 2 Aug 20 10 1 12 1 Aug 21 17 1 Aug 22 10 3 12 2 13 35 14 59 15 54 16 43 17 54 18 58 19 28 20 32 21 25 22 32 23 24 Aug 23 00 16 01 23 02 12 03 18 04 20 05 15 06 6 Aug 24 13 1 - ERROR: canceling statement due to user request
- ERROR: canceling statement due to user request
- ERROR: canceling statement due to user request
Statement: SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc'
Date: 2024-08-19 13:09:19
Statement: select count(*) from ( SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc' ) as test
Date: 2024-08-19 13:11:56
Statement: select count(*) from ( select chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm from pub2.term chemTerm ,pub2.term geneTerm ,pub2.term phenotypeTerm ,pub2.term diseaseTerm WHERE ( chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id ) IN ( SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM pub2.gene_chem_reference gcr ,pub2.chem_disease_reference cdr ,pub2.gene_disease_reference gdr ,pub2.phenotype_term_reference ptr ,pub2.GENE_GO_ANNOT g2g ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id ) ) as test
Date: 2024-08-20 10:41:59
2 452 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #2
Day Hour Count Aug 21 22 1 23 1 Aug 22 13 30 14 38 15 39 16 39 17 41 18 46 19 19 20 28 21 19 22 27 23 21 Aug 23 00 15 01 21 02 10 03 15 04 20 05 14 06 7 Aug 24 13 1 3 449 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #3
Day Hour Count Aug 22 13 30 14 38 15 39 16 39 17 41 18 45 19 19 20 28 21 20 22 27 23 21 Aug 23 00 15 01 21 02 10 03 14 04 20 05 14 06 7 Aug 24 13 1 4 32 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #4
Day Hour Count Aug 19 18 2 19 6 20 1 Aug 20 21 2 22 5 Aug 22 18 9 19 4 Aug 23 19 3 5 12 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #5
Day Hour Count Aug 19 13 1 Aug 20 10 1 12 1 Aug 21 14 2 16 4 Aug 22 10 1 12 1 17 1 - ERROR: syntax error at or near ")" at character 24
- ERROR: syntax error at or near ")" at character 31
- ERROR: syntax error at or near "BY" at character 2855
Statement: select count(*) from () SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id ) as test
Date: 2024-08-19 13:50:23
Statement: explain select count(*) from () SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM pub2.gene_chem_reference gcr ,pub2.chem_disease_reference cdr ,pub2.gene_disease_reference gdr ,pub2.phenotype_term_reference ptr ,pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id ) as test
Date: 2024-08-20 10:48:28
Statement: -- Problematic Query 1 Rewrite suggestion by EDB WITH viaChemPTR AS ( SELECT phenotype_id ,viaChemPTR.term_id ,viaChemPTR.via_term_id FROM PHENOTYPE_TERM_REFERENCE viaChemPTR ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM chemTerm WHERE viaChemPTR.phenotype_id = phenotypeTerm.id AND viaChemPTR.term_id = diseaseTerm.id AND viaChemPTR.via_term_id = chemTerm.id AND viaChemPTR.term_object_type_id = 3 AND viaChemPTR.via_term_object_type_id = 2 AND exists ( SELECT t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','NEURON') AND t.object_type_id = 5 AND phenotypeTerm.id = t.id ) ) select distinct phenotypeTerm.nm AS goNm ,phenotypeTerm.nm_html AS goNmHtml ,phenotypeTerm.acc_txt AS goAcc ,diseaseTerm.nm AS diseaseNm ,diseaseTerm.nm_html AS diseaseNmHtml ,diseaseTerm.acc_txt AS diseaseAcc ,diseaseTerm.acc_db_cd AS diseaseAccDbCd ,chemTerm.nm AS chemNm ,chemTerm.nm_html AS chemNmHtml ,chemTerm.acc_txt AS chemAcc ,geneTerm.nm AS geneSymbol ,geneTerm.nm_html AS geneSymbolHtml ,geneTerm.acc_txt AS geneAcc ,COUNT(*) OVER() fullRowCount from viaChemPTR ,PHENOTYPE_TERM_REFERENCE viaGenePTR ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM geneTerm ,TERM chemTerm where viaChemPTR.phenotype_id = phenotypeTerm.id and viaChemPTR.term_id = diseaseTerm.id and viaChemPTR.via_term_id = chemTerm.id and viaChemPTR.term_id = viaGenePTR.term_id and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id and viaGenePTR.via_term_object_type_id = 4 and viaGenePTR.via_term_id = geneTerm.id and exists ( select 1 from gene_chem_reference where gene_id = geneTerm.id and chem_id = chemTerm.id ) GROUP BY phenotypeTerm.id, diseaseTerm.id, chemTerm.id, geneTerm.idORDER BY chemTerm.nm
Date: 2024-08-20 12:17:38 Database: ctddev51 Application: pgAdmin 4 - CONN:409052 User: pub2 Remote:
6 8 FATAL: terminating background worker "..." due to administrator command
Times Reported Most Frequent Error / Event #6
Day Hour Count Aug 20 10 4 Aug 23 06 4 - FATAL: terminating background worker "parallel worker" due to administrator command
- FATAL: terminating background worker "parallel worker" due to administrator command
- FATAL: terminating background worker "parallel worker" due to administrator command
Statement: select count(*) from
Date: 2024-08-20 10:42:00
Statement: select count(*) from ( select chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm from pub2.term chemTerm ,pub2.term geneTerm ,pub2.term phenotypeTerm ,pub2.term diseaseTerm WHERE ( chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id ) IN ( SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM pub2.gene_chem_reference gcr ,pub2.chem_disease_reference cdr ,pub2.gene_disease_reference gdr ,pub2.phenotype_term_reference ptr ,pub2.GENE_GO_ANNOT g2g ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id ) ) as test
Date: 2024-08-20 10:42:00
Statement: SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease ,chemTerm.nm AS chemTerm ,geneTerm.nm AS geneTerm ,phenotypeTerm.nm AS phenotypeTerm ,diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id -- AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm ,initialTetramerSet.geneTerm ,initialTetramerSet.phenotypeTerm ,initialTetramerSet.diseaseTerm FROM initialTetramerSet ,gene_chem_reference gcr ,phenotype_term_reference ptr ,gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE
Date: 2024-08-23 06:11:45
7 7 ERROR: missing FROM-clause entry for table "..."
Times Reported Most Frequent Error / Event #7
Day Hour Count Aug 19 13 1 Aug 20 09 1 10 1 12 1 Aug 21 14 1 16 1 Aug 22 12 1 - ERROR: missing FROM-clause entry for table "cgr" at character 749
- ERROR: missing FROM-clause entry for table "gga" at character 1017
- ERROR: missing FROM-clause entry for table "ptr" at character 891
Statement: SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cgr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc'
Date: 2024-08-19 13:08:32
Statement: select chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm from pub2.term chemTerm ,pub2.term geneTerm ,pub2.term phenotypeTerm ,pub2.term diseaseTerm WHERE ( chemTerm.id, geneTerm.id, phenotypeTerm.id, diseaseTerm.id ) IN ( SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM pub2.gene_chem_reference gcr ,pub2.chem_disease_reference cdr ,pub2.gene_disease_reference gdr ,pub2.phenotype_term_reference ptr ,pub2.GENE_GO_ANNOT g2g ,pub2.term chemTerm WHERE chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND gga.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id )
Date: 2024-08-20 09:59:08 Database: ctddev51 Application: pgAdmin 4 - CONN:5617789 User: pub2 Remote:
Statement: explain SELECT DISTINCT gcr.chem_id ,gcr.gene_id -- ,ptr.phenotype_id ,cdr.disease_id FROM pub2.gene_chem_reference gcr ,pub2.chem_disease_reference cdr ,pub2.gene_disease_reference gdr -- ,pub2.phenotype_term_reference ptr ,pub2.GENE_GO_ANNOT g2g -- ,pub2.term chemTerm -- WHERE chemTerm.nm = 'Zinc' -- AND object_type_id = 2 -- chemical -- AND chemTerm.id = gcr.chem_id -- AND gcr.chem_id = cdr.chem_id where gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' --AND gcr.chem_id = ptr.term_id --AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND g2g.is_not IS FALSE AND cdr.disease_id = gdr.disease_id AND ptr.phenotype_id = g2g.go_term_id
Date: 2024-08-20 10:46:09 Database: ctddev51 Application: pgAdmin 4 - CONN:544235 User: pub2 Remote:
8 6 FATAL: password authentication failed for user "..."
Times Reported Most Frequent Error / Event #8
Day Hour Count Aug 20 09 4 Aug 23 09 2 - FATAL: password authentication failed for user "pub1"
Detail: Connection matched pg_hba.conf line 85: "host all all 192.168.201.0/24 md5 "
Date: 2024-08-20 09:58:28
9 6 ERROR: subquery in FROM must have an alias
Times Reported Most Frequent Error / Event #9
Day Hour Count Aug 19 13 1 Aug 21 14 1 15 1 16 1 Aug 22 12 2 - ERROR: subquery in FROM must have an alias at character 22
- ERROR: subquery in FROM must have an alias at character 22
- ERROR: subquery in FROM must have an alias at character 22
Hint: For example, FROM (SELECT ...) [AS] foo.
Statement: select count(*) from ( SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.term_id = cdr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc' )Date: 2024-08-19 13:09:41
Hint: For example, FROM (SELECT ...) [AS] foo.
Statement: SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM initialTetramerSet ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id AND EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id ) AND EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) ) AND EXISTS -- G-P ( select 1 from gene_go_annot gga WHERE initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE ) -- ------------------------------------------------- AND chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical )Date: 2024-08-21 14:54:25
Hint: For example, FROM (SELECT ...) [AS] foo.
Statement: select count(*) from ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene )Date: 2024-08-21 15:54:39 Database: ctddev51 Application: pgAdmin 4 - CONN:3308362 User: pub2 Remote:
10 3 LOG: could not send data to client: Connection timed out
Times Reported Most Frequent Error / Event #10
Day Hour Count Aug 21 22 1 23 1 Aug 23 06 1 - ERROR: could not send data to client: Connection timed out
Statement: SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease ,chemTerm.nm AS chemTerm ,geneTerm.nm AS geneTerm ,phenotypeTerm.nm AS phenotypeTerm ,diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id -- AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm ,initialTetramerSet.geneTerm ,initialTetramerSet.phenotypeTerm ,initialTetramerSet.diseaseTerm FROM initialTetramerSet ,gene_chem_reference gcr ,phenotype_term_reference ptr ,gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: -- AND chemTerm = 'Zinc' ) as test
Date: 2024-08-23 06:11:45
11 3 ERROR: column "..." does not exist
Times Reported Most Frequent Error / Event #11
Day Hour Count Aug 19 13 2 Aug 21 14 1 - ERROR: column ptr.chem_id does not exist at character 730
- ERROR: column gdr.disease does not exist at character 704
- ERROR: column gga.phenotype_id does not exist at character 1763
Hint: Perhaps you meant to reference the column "gcr.chem_id" or the column "cdr.chem_id".
Statement: SELECT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE gcr.chem_id = chemTerm.id AND gcr.gene_id = geneTerm.id AND cdr.disease_id = diseaseTerm.id AND ptr.phenotype_id = phenotypeTerm.id AND gcr.chem_id = cdr.chem_id AND gcr.gene_id = gdr.gene_id AND ptr.chem_id = cgr.chem_id AND ptr.phenotype_id = g2g.go_term_id AND g2g.gene_id = gcr.gene_id AND cdr.source_cd = 'C' AND gdr.source_cd IN ( 'C', 'O' ) AND ptr.source_cd IN ( 'C' ) AND chemTerm.nm = 'Zinc'Date: 2024-08-19 13:07:52 Database: ctddev51 Application: pgAdmin 4 - CONN:9631879 User: pub1 Remote:
Hint: Perhaps you meant to reference the column "gdr.disease_id".
Statement: explain SELECT DISTINCT gcr.chem_id ,gcr.gene_id ,ptr.phenotype_id ,cdr.disease_id FROM gene_chem_reference gcr ,chem_disease_reference cdr ,gene_disease_reference gdr ,phenotype_term_reference ptr ,GENE_GO_ANNOT g2g ,term chemTerm WHERE chemTerm.nm = 'Zinc' AND chemTerm.id = gcr.chem_id AND gcr.chem_id = cdr.chem_id AND cdr.source_cd = 'C' AND gcr.chem_id = ptr.term_id AND ptr.source_cd IN ( 'C' ) AND gcr.gene_id = gdr.gene_id AND gdr.source_cd IN ( 'C', 'O' ) AND gcr.gene_id = g2g.gene_id AND cdr.disease_id = gdr.disease AND ptr.phenotype_id = g2g.go_term_idDate: 2024-08-19 13:49:33 Database: ctddev51 Application: pgAdmin 4 - CONN:6782070 User: pub1 Remote:
Statement: WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm -- ,initialTetramerSet.gene_id FROM initialTetramerSet ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id AND EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id ) AND EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) ) AND EXISTS -- G-P ( select 1 from gene_go_annot gga WHERE initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.phenotype_id AND gga.is_not IS FALSE ) -- ------------------------------------------------- AND chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical -- AND chemTerm.id = initialTetramerSet.chem_id limit 1
Date: 2024-08-21 14:46:29
12 2 ERROR: column reference "..." is ambiguous
Times Reported Most Frequent Error / Event #12
Day Hour Count Aug 21 14 2 - ERROR: column reference "object_type_id" is ambiguous at character 1893
- ERROR: column reference "object_type_id" is ambiguous at character 1870
Statement: WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm -- ,initialTetramerSet.gene_id FROM initialTetramerSet ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id AND EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id ) AND EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) ) AND EXISTS -- G-P ( select 1 from gene_go_annot gga WHERE initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE ) -- ------------------------------------------------- AND chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical -- AND chemTerm.id = initialTetramerSet.chem_id limit 1
Date: 2024-08-21 14:46:51
Statement: SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ) SELECT DISTINCT chemTerm.nm ,geneTerm.nm ,phenotypeTerm.nm ,diseaseTerm.nm FROM initialTetramerSet ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE chemTerm.id = initialTetramerSet.chem_id AND geneTerm.id = initialTetramerSet.gene_id AND phenotypeTerm.id = initialTetramerSet.phenotype_id AND diseaseTerm.id = initialTetramerSet.disease_id AND EXISTS -- G-C ( select 1 from gene_chem_reference gcr where initialTetramerSet.gene_id = gcr.gene_id and initialTetramerSet.chem_id = gcr.chem_id ) AND EXISTS -- C-P ( select 1 from phenotype_term_reference ptr WHERE initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) ) AND EXISTS -- G-P ( select 1 from gene_go_annot gga WHERE initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE ) -- ------------------------------------------------- AND chemTerm.nm = 'Zinc' AND object_type_id = 2 -- chemical ) AS tetramerCount
Date: 2024-08-21 14:54:42
13 1 ERROR: could not write to file "...": No space left on device
Times Reported Most Frequent Error / Event #13
Day Hour Count Aug 23 06 1 - ERROR: could not write to file "base/pgsql_tmp/pgsql_tmp669881.1880": No space left on device
Statement: SELECT count(*) FROM ( WITH initialTetramerSet AS ( SELECT viaChemPTR.via_term_id AS chem_id -- chem ,viaGenePTR.via_term_id AS gene_id -- gene ,viaChemPTR.phenotype_id AS phenotype_id ,viaChemPTR.term_id AS disease_id -- disease ,chemTerm.nm AS chemTerm ,geneTerm.nm AS geneTerm ,phenotypeTerm.nm AS phenotypeTerm ,diseaseTerm.nm AS diseaseTerm FROM phenotype_term_reference viaChemPTR ,phenotype_term_reference viaGenePTR ,term chemTerm ,term geneTerm ,term phenotypeTerm ,term diseaseTerm WHERE viaChemPTR.term_id = viaGenePTR.term_id AND viaChemPTR.term_object_type_id = 3 -- disease AND viaChemPTR.phenotype_id = viaGenePTR.phenotype_id AND viaChemPTR.via_term_object_type_id = 2 -- chem AND viaGenePTR.via_term_object_type_id = 4 -- gene ------------------------------------------------------- AND chemTerm.id = viaChemPTR.via_term_id AND geneTerm.id = viaGenePTR.via_term_id AND phenotypeTerm.id = viaChemPTR.phenotype_id AND diseaseTerm.id = viaChemPTR.term_id -- AND chemTerm.nm = 'Zinc' ) SELECT DISTINCT initialTetramerSet.chemTerm ,initialTetramerSet.geneTerm ,initialTetramerSet.phenotypeTerm ,initialTetramerSet.diseaseTerm FROM initialTetramerSet ,gene_chem_reference gcr ,phenotype_term_reference ptr ,gene_go_annot gga -- GCR where initialTetramerSet.gene_id = gcr.gene_id AND initialTetramerSet.chem_id = gcr.chem_id -- PTR AND initialTetramerSet.chem_id = ptr.term_id and initialTetramerSet.phenotype_id = ptr.phenotype_id AND ptr.source_cd IN ( 'C' ) -- GGA AND initialTetramerSet.gene_id = gga.gene_id and initialTetramerSet.phenotype_id = gga.go_term_id AND gga.is_not IS FALSE -- this takes 3 seconds: -- AND chemTerm = 'Zinc' ) as test
Date: 2024-08-23 06:11:45
14 1 LOG: could not send data to client: Connection reset by peer
Times Reported Most Frequent Error / Event #14
Day Hour Count Aug 22 18 1 15 1 ERROR: input of anonymous composite types is not implemented
Times Reported Most Frequent Error / Event #15
Day Hour Count Aug 22 12 1 - ERROR: input of anonymous composite types is not implemented at character 1241
Statement: SELECT count(*) FROM
Date: 2024-08-22 12:33:19
16 1 WARNING: is not a PostgreSQL server process
Times Reported Most Frequent Error / Event #16
Day Hour Count Aug 19 15 1 17 1 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #17
Day Hour Count Aug 23 15 1