pgBadger-
Global information
- Generated on Thu Mar 28 04:15:05 2024
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20240327
- Parsed 115,994 log entries in 4s
- Log start from 2024-03-27 00:00:01 to 2024-03-27 23:59:55
-
Overview
Global Stats
- 203 Number of unique normalized queries
- 764 Number of queries
- 6h34m17s Total query duration
- 2024-03-27 00:14:56 First query
- 2024-03-27 23:59:46 Last query
- 6 queries/s at 2024-03-27 06:22:37 Query peak
- 6h34m17s Total query duration
- 0ms Prepare/parse total duration
- 1s633ms Bind total duration
- 6h34m16s Execute total duration
- 19 Number of events
- 6 Number of unique normalized events
- 5 Max number of times the same event was reported
- 0 Number of cancellation
- 59 Total number of automatic vacuums
- 105 Total number of automatic analyzes
- 1,856 Number temporary file
- 23.44 GiB Max size of temporary file
- 177.72 MiB Average size of temporary file
- 12,955 Total number of sessions
- 177 sessions at 2024-03-27 23:27:59 Session peak
- 58d19h28m2s Total duration of sessions
- 6m32s Average duration of sessions
- 0 Average queries per session
- 1s826ms Average queries duration per session
- 6m30s Average idle time per session
- 12,964 Total number of connections
- 68 connections/s at 2024-03-27 21:13:36 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 6 queries/s Query Peak
- 2024-03-27 06:22:37 Date
SELECT Traffic
Key values
- 6 queries/s Query Peak
- 2024-03-27 06:22:37 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 2 queries/s Query Peak
- 2024-03-27 22:38:00 Date
Queries duration
Key values
- 6h34m17s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Mar 27 00 7 0ms 14m55s 2m10s 2s444ms 6s580ms 14m55s 01 11 0ms 13s195ms 4s638ms 4s207ms 7s990ms 17s420ms 02 9 0ms 5s256ms 1s634ms 1s288ms 3s374ms 5s256ms 03 9 0ms 5s303ms 2s573ms 2s365ms 4s2ms 7s964ms 04 11 0ms 4s114ms 2s239ms 2s592ms 3s974ms 5s496ms 05 50 0ms 4s53ms 2s204ms 8s514ms 13s614ms 22s770ms 06 37 0ms 30s585ms 5s249ms 9s309ms 28s314ms 52s34ms 07 5 0ms 2s166ms 1s427ms 1s71ms 1s258ms 2s166ms 08 22 0ms 12s434ms 5s120ms 6s935ms 12s434ms 27s705ms 09 7 0ms 6s929ms 3s50ms 1s955ms 4s249ms 6s929ms 10 24 0ms 30s610ms 6s133ms 6s31ms 10s394ms 51s976ms 11 17 0ms 17m2s 1m2s 3s992ms 5s421ms 17m2s 12 10 0ms 4s442ms 2s383ms 1s261ms 2s220ms 12s330ms 13 8 0ms 12s541ms 5s93ms 2s2ms 6s286ms 12s541ms 14 25 0ms 30s670ms 5s86ms 4s322ms 6s727ms 48s337ms 15 41 0ms 3m24s 18s823ms 1m5s 1m18s 3m36s 16 54 0ms 1m38s 12s734ms 1m1s 1m16s 2m2s 17 61 0ms 21m15s 1m32s 2m59s 10m48s 37m49s 18 88 0ms 33m58s 35s153ms 44s930ms 52s177ms 34m10s 19 23 0ms 35m48s 1m37s 4s56ms 9s579ms 35m48s 20 68 0ms 35m41s 1m3s 1m49s 5m23s 35m44s 21 44 0ms 26s628ms 2s919ms 8s382ms 9s599ms 26s628ms 22 71 0ms 12m7s 22s622ms 1m1s 3m 12m10s 23 62 0ms 24m20s 36s197ms 1m20s 1m56s 24m24s Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Mar 27 00 5 0 3m 0ms 1s243ms 14m55s 01 11 0 4s638ms 1s253ms 4s207ms 17s420ms 02 9 0 1s634ms 0ms 1s288ms 5s256ms 03 9 0 2s573ms 1s127ms 2s365ms 7s964ms 04 11 0 2s239ms 1s185ms 2s592ms 5s496ms 05 46 0 2s205ms 2s77ms 8s514ms 22s770ms 06 25 10 5s397ms 4s13ms 9s309ms 52s34ms 07 5 0 1s427ms 0ms 1s71ms 2s166ms 08 22 0 5s120ms 4s63ms 6s935ms 27s705ms 09 7 0 3s50ms 0ms 1s955ms 6s929ms 10 13 10 6s258ms 1s450ms 6s31ms 37s71ms 11 17 0 1m2s 1s277ms 3s992ms 8s229ms 12 7 0 2s148ms 0ms 1s261ms 4s318ms 13 7 0 4s277ms 0ms 1s579ms 12s541ms 14 16 9 5s86ms 2s373ms 4s322ms 48s337ms 15 41 0 18s823ms 22s712ms 1m5s 3m36s 16 34 0 15s466ms 5s607ms 1m 1m14s 17 21 0 2m19s 1s403ms 4s68ms 10m1s 18 49 10 51s303ms 11s22ms 42s354ms 9m27s 19 8 0 4m35s 0ms 2s63ms 35m48s 20 14 0 3m43s 2s164ms 56s139ms 6m24s 21 14 0 4s226ms 1s273ms 1s515ms 26s628ms 22 34 0 14s708ms 8s120ms 49s842ms 2m59s 23 20 0 3s737ms 1s718ms 4s130ms 6s568ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Mar 27 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 1 0 0 0 10s808ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 12 0 0 0 3m42s 0ms 0ms 3m32s 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 15 9 0 0 1m27s 0ms 0ms 1m56s Day Hour Prepare Bind Bind/Prepare Percentage of prepare Mar 27 00 0 5 5.00 0.00% 01 0 11 11.00 0.00% 02 0 9 9.00 0.00% 03 0 9 9.00 0.00% 04 0 11 11.00 0.00% 05 0 50 50.00 0.00% 06 0 29 29.00 0.00% 07 0 5 5.00 0.00% 08 0 22 22.00 0.00% 09 0 7 7.00 0.00% 10 0 14 14.00 0.00% 11 0 18 18.00 0.00% 12 0 6 6.00 0.00% 13 0 7 7.00 0.00% 14 0 16 16.00 0.00% 15 0 41 41.00 0.00% 16 0 51 51.00 0.00% 17 0 61 61.00 0.00% 18 0 78 78.00 0.00% 19 0 23 23.00 0.00% 20 0 68 68.00 0.00% 21 0 44 44.00 0.00% 22 0 71 71.00 0.00% 23 0 62 62.00 0.00% Day Hour Count Average / Second Mar 27 00 526 0.15/s 01 529 0.15/s 02 535 0.15/s 03 526 0.15/s 04 529 0.15/s 05 551 0.15/s 06 535 0.15/s 07 526 0.15/s 08 531 0.15/s 09 532 0.15/s 10 548 0.15/s 11 536 0.15/s 12 546 0.15/s 13 526 0.15/s 14 530 0.15/s 15 598 0.17/s 16 574 0.16/s 17 539 0.15/s 18 543 0.15/s 19 528 0.15/s 20 544 0.15/s 21 531 0.15/s 22 558 0.15/s 23 543 0.15/s Day Hour Count Average Duration Average idle time Mar 27 00 526 4m31s 4m29s 01 529 4m35s 4m35s 02 535 4m30s 4m30s 03 526 4m18s 4m18s 04 529 4m33s 4m32s 05 551 4m20s 4m20s 06 535 4m40s 4m40s 07 526 4m34s 4m34s 08 531 4m27s 4m27s 09 532 4m39s 4m39s 10 545 4m26s 4m26s 11 533 4m26s 4m24s 12 541 4m43s 4m43s 13 526 4m40s 4m40s 14 530 4m35s 4m35s 15 598 4m4s 4m2s 16 573 4m15s 4m14s 17 539 4m32s 4m22s 18 543 4m35s 4m29s 19 530 6m27s 6m23s 20 545 51m20s 51m12s 21 531 4m19s 4m18s 22 558 4m21s 4m18s 23 543 4m33s 4m28s -
Connections
Established Connections
Key values
- 68 connections Connection Peak
- 2024-03-27 21:13:36 Date
Connections per database
Key values
- postgres Main Database
- 12,964 connections Total
Connections per user
Key values
- postgres Main User
- 12,964 connections Total
-
Sessions
Simultaneous sessions
Key values
- 177 sessions Session Peak
- 2024-03-27 23:27:59 Date
Histogram of session times
Key values
- 10,878 0-500ms duration
Sessions per database
Key values
- postgres Main Database
- 12,955 sessions Total
Sessions per user
Key values
- postgres Main User
- 12,955 sessions Total
Sessions per host
Key values
- [local] Main Host
- 12,955 sessions Total
Host Count Total Duration Average Duration 10.12.5.36 15 33s726ms 2s248ms 10.12.5.37 441 8d2h37m 26m28s 10.12.5.38 374 7d23h22m54s 30m42s 10.12.5.39 371 8d39m55s 31m9s 10.12.5.40 181 7h40m47s 2m32s 10.12.5.45 381 7d23h59m 30m14s 10.12.5.46 375 7d23h40m22s 30m40s 192.168.201.10 2 1h36m33s 48m16s 192.168.202.6 3 1d1h46m56s 8h35m38s ::1 60 17d6h3m27s 6h54m3s [local] 10,752 30s83ms 2ms -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 4,857,166 buffers Checkpoint Peak
- 2024-03-27 23:15:15 Date
- 1620.000 seconds Highest write time
- 0.407 seconds Sync time
Checkpoints Wal files
Key values
- 699 files Wal files usage Peak
- 2024-03-27 20:33:33 Date
Checkpoints distance
Key values
- 17,606.20 Mo Distance Peak
- 2024-03-27 20:30:01 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Mar 27 00 48,908 1,620s 0.003s 1,620.079s 01 3,071 307.816s 0.002s 307.848s 02 6,285 629.713s 0.002s 629.819s 03 1,411 141.578s 0.002s 141.656s 04 110 11.206s 0.002s 11.236s 05 721 72.483s 0.002s 72.515s 06 281 28.355s 0.002s 28.387s 07 1,096 110s 0.002s 110.075s 08 11,734 1,175.23s 0.002s 1,175.381s 09 92,015 1,964.926s 0.003s 1,965.385s 10 10,730 1,074.817s 0.004s 1,074.943s 11 6,226 623.819s 0.003s 623.922s 12 283 28.587s 0.002s 28.618s 13 22,562 1,622.719s 0.172s 1,623.302s 14 143 14.512s 0.002s 14.543s 15 231,055 1,465.514s 0.743s 1,480.764s 16 73,785 706.297s 0.079s 719.706s 17 1,983,262 2,343.944s 0.649s 2,371.812s 18 894,066 3,238.696s 0.029s 3,246.051s 19 34,234 1,632.382s 0.004s 1,632.445s 20 3,715,584 72.846s 0.295s 110.308s 21 654,006 1,623.111s 0.012s 1,629.133s 22 3,294,351 2,656.75s 0.056s 2,678.093s 23 6,380,700 1,780.697s 0.512s 1,810.82s Day Hour Added Removed Recycled Synced files Longest sync Average sync Mar 27 00 0 0 2 41 0.001s 0.001s 01 0 0 0 72 0.001s 0.002s 02 0 0 3 39 0.001s 0.002s 03 0 0 1 37 0.001s 0.002s 04 0 0 0 26 0.001s 0.002s 05 0 0 0 41 0.001s 0.002s 06 0 0 0 79 0.001s 0.002s 07 0 0 1 84 0.001s 0.002s 08 0 0 7 41 0.001s 0.002s 09 0 0 33 58 0.002s 0.002s 10 0 0 5 135 0.001s 0.002s 11 0 0 3 120 0.001s 0.002s 12 0 0 0 106 0.001s 0.002s 13 0 0 19 837 0.002s 0.002s 14 0 0 0 28 0.001s 0.002s 15 0 154 1,075 310 0.337s 0.01s 16 0 0 1,076 403 0.007s 0.002s 17 0 0 2,152 307 0.144s 0.012s 18 0 0 591 325 0.001s 0.002s 19 0 0 0 72 0.001s 0.003s 20 0 31 2,638 148 0.278s 0.016s 21 0 0 491 93 0.001s 0.002s 22 0 1 1,411 185 0.043s 0.003s 23 0 502 2,152 551 0.293s 0.009s Day Hour Count Avg time (sec) Mar 27 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Mar 27 00 532,363.00 kB 532,363.00 kB 01 10,296.50 kB 457,113.00 kB 02 31,452.50 kB 373,423.00 kB 03 4,739.50 kB 306,198.50 kB 04 225.50 kB 248,062.50 kB 05 2,017.00 kB 201,315.00 kB 06 664.50 kB 163,170.00 kB 07 3,209.00 kB 132,796.00 kB 08 56,647.50 kB 118,311.50 kB 09 274,989.00 kB 501,448.00 kB 10 40,840.00 kB 414,018.50 kB 11 24,126.00 kB 338,777.00 kB 12 897.00 kB 276,685.50 kB 13 151,279.50 kB 287,306.50 kB 14 165.00 kB 232,749.00 kB 15 4,901,756.00 kB 4,951,704.00 kB 16 8,822,779.50 kB 8,824,633.00 kB 17 8,811,755.25 kB 8,821,134.50 kB 18 5,095,665.50 kB 8,447,332.50 kB 19 8,925.00 kB 6,567,723.00 kB 20 7,375,778.67 kB 8,340,815.17 kB 21 3,751,575.50 kB 8,373,522.00 kB 22 7,712,527.50 kB 8,737,994.75 kB 23 8,810,804.75 kB 8,901,602.25 kB -
Temporary Files
Size of temporary files
Key values
- 15.00 GiB Temp Files size Peak
- 2024-03-27 20:14:20 Date
Number of temporary files
Key values
- 16 per second Temp Files Peak
- 2024-03-27 22:53:11 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Mar 27 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 806 23.09 GiB 29.33 MiB 16 317 21.17 GiB 68.40 MiB 17 0 0 0 18 24 23.44 GiB 1000.12 MiB 19 44 43.78 GiB 1018.77 MiB 20 324 164.81 GiB 520.87 MiB 21 0 0 0 22 250 42.95 GiB 175.93 MiB 23 91 2.88 GiB 32.46 MiB Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 1,193 62.90 GiB 8.00 KiB 1.00 GiB 53.99 MiB select * from pgbulkload.pg_bulkload (?);-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s
2 59 58.29 GiB 300.40 MiB 1.00 GiB 1011.74 MiB select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;-
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;
Date: 2024-03-27 20:14:17 Duration: 0ms
3 44 43.78 GiB 793.99 MiB 1.00 GiB 1018.77 MiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;-
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;
Date: 2024-03-27 19:38:29 Duration: 0ms
4 35 3.21 GiB 54.26 MiB 132.35 MiB 93.82 MiB vacuum full analyze db_link;-
vacuum FULL analyze db_link;
Date: 2024-03-27 16:47:17 Duration: 1m25s
-
vacuum FULL analyze db_link;
Date: 2024-03-27 16:46:07 Duration: 0ms
5 35 1.08 GiB 22.69 MiB 46.35 MiB 31.59 MiB vacuum full analyze ixn_actor;-
vacuum FULL analyze ixn_actor;
Date: 2024-03-27 16:45:27 Duration: 22s433ms
-
vacuum FULL analyze ixn_actor;
Date: 2024-03-27 16:45:11 Duration: 0ms
6 25 15.34 GiB 8.00 KiB 1.00 GiB 628.40 MiB alter table pub1.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:11 Duration: 2m52s
-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:10 Duration: 0ms
7 25 354.96 MiB 10.95 MiB 21.20 MiB 14.20 MiB vacuum full analyze ixn;-
vacuum FULL analyze ixn;
Date: 2024-03-27 16:45:39 Duration: 7s304ms
-
vacuum FULL analyze ixn;
Date: 2024-03-27 16:45:34 Duration: 0ms
8 20 12.10 GiB 8.00 KiB 1.00 GiB 619.47 MiB create unique index gene_disease_reference_ak1 on pub1.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:14 Duration: 2m59s
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:13 Duration: 0ms
9 20 213.10 MiB 6.35 MiB 17.02 MiB 10.66 MiB vacuum full analyze term;-
vacuum FULL analyze TERM;
Date: 2024-03-27 16:45:01 Duration: 9s772ms
-
vacuum FULL analyze TERM;
Date: 2024-03-27 16:44:53 Duration: 0ms
10 15 10.96 GiB 56.59 MiB 1.00 GiB 748.08 MiB create index ix_term_enrich_agent_enr_term on pub1.term_enrichment_agent using btree (enriched_term_id);-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub1.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-03-27 22:54:54 Duration: 1m42s
-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub1.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-03-27 22:54:53 Duration: 0ms
11 15 6.72 GiB 8.00 KiB 1.00 GiB 458.87 MiB alter table pub1.gene_disease_reference add constraint gene_disease_reference_pk primary key (id);-
ALTER TABLE pub1.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:27:15 Duration: 1m8s
-
ALTER TABLE pub1.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:27:14 Duration: 0ms Database: ctdprd51 User: pub1
12 10 432.22 MiB 8.00 KiB 87.37 MiB 43.22 MiB create unique index chem_disease_reference_ak1 on pub1.chem_disease_reference using btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub1.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-03-27 20:45:04 Duration: 6s73ms
-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub1.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-03-27 20:45:04 Duration: 0ms
13 10 153.55 MiB 8.00 KiB 31.14 MiB 15.36 MiB alter table pub1.term_enrichment add constraint term_enrichment_pk primary key (term_id, enriched_term_id);-
ALTER TABLE pub1.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-03-27 22:37:56 Duration: 2s89ms
-
ALTER TABLE pub1.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-03-27 22:37:56 Duration: 0ms Database: ctdprd51 User: pub1
14 10 622.84 MiB 8.00 KiB 126.03 MiB 62.28 MiB alter table pub1.gene_disease add constraint gene_disease_pk primary key (gene_id, disease_id);-
ALTER TABLE pub1.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-03-27 23:08:55 Duration: 7s298ms
-
ALTER TABLE pub1.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-03-27 23:08:54 Duration: 0ms Database: ctdprd51 User: pub1
15 10 6.72 GiB 300.27 MiB 1.00 GiB 688.29 MiB create index ix_gene_disease_ref_chem on pub1.gene_disease_reference using btree (via_chem_id);-
CREATE INDEX ix_gene_disease_ref_chem ON pub1.gene_disease_reference USING btree (via_chem_id);
Date: 2024-03-27 20:33:24 Duration: 1m27s
-
CREATE INDEX ix_gene_disease_ref_chem ON pub1.gene_disease_reference USING btree (via_chem_id);
Date: 2024-03-27 20:33:24 Duration: 0ms
16 10 981.18 MiB 8.00 KiB 200.07 MiB 98.12 MiB alter table pub1.phenotype_term_reference add constraint phenotype_term_reference_pk primary key (id);-
ALTER TABLE pub1.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:43:14 Duration: 11s408ms
-
ALTER TABLE pub1.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:43:13 Duration: 0ms
17 10 6.72 GiB 324.91 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_net_sc on pub1.gene_disease_reference using btree (network_score);-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:03 Duration: 2m20s
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:02 Duration: 0ms
18 10 6.72 GiB 325.92 MiB 1.00 GiB 688.29 MiB create index ix_gene_disease_ref_mod_tm on pub1.gene_disease_reference using btree (mod_tm);-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub1.gene_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:40:42 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub1.gene_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:40:42 Duration: 0ms
19 10 61.91 MiB 8.00 KiB 14.10 MiB 6.19 MiB alter table pub1.phenotype_term add constraint phenotype_term_pk primary key (phenotype_id, term_id);-
ALTER TABLE pub1.phenotype_term ADD CONSTRAINT phenotype_term_pk PRIMARY KEY (phenotype_id, term_id);
Date: 2024-03-27 23:09:24 Duration: 0ms
20 10 6.72 GiB 324.93 MiB 1.00 GiB 688.29 MiB create index ix_gene_disease_ref_reference on pub1.gene_disease_reference using btree (reference_id);-
CREATE INDEX ix_gene_disease_ref_reference ON pub1.gene_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:36:08 Duration: 1m21s
-
CREATE INDEX ix_gene_disease_ref_reference ON pub1.gene_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:36:07 Duration: 0ms
21 10 6.72 GiB 293.18 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_dis_gene on pub1.gene_disease_reference using btree (disease_id, gene_id);-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub1.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-03-27 20:37:57 Duration: 1m49s
-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub1.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-03-27 20:37:57 Duration: 0ms
22 10 237.23 MiB 8.00 KiB 48.97 MiB 23.72 MiB alter table pub1.chem_disease_reference add constraint chem_disease_reference_pk primary key (id);-
ALTER TABLE pub1.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:45:29 Duration: 2s154ms
-
ALTER TABLE pub1.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-03-27 20:45:29 Duration: 0ms
23 10 6.72 GiB 155.39 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_source_cd on pub1.gene_disease_reference using btree (source_cd);-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub1.gene_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:31:56 Duration: 55s955ms
-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub1.gene_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:31:56 Duration: 0ms
24 10 6.72 GiB 315.96 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_reference_ixn on pub1.gene_disease_reference using btree (ixn_id);-
CREATE INDEX ix_gene_disease_reference_ixn ON pub1.gene_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:39:19 Duration: 1m21s
-
CREATE INDEX ix_gene_disease_reference_ixn ON pub1.gene_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:39:19 Duration: 0ms
25 10 6.72 GiB 304.45 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_src_db on pub1.gene_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_gene_disease_ref_src_db ON pub1.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:31:01 Duration: 46s674ms
-
CREATE INDEX ix_gene_disease_ref_src_db ON pub1.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:31:00 Duration: 0ms
26 10 6.72 GiB 304.05 MiB 1.00 GiB 688.30 MiB create index ix_gene_disease_ref_disease on pub1.gene_disease_reference using btree (disease_id);-
CREATE INDEX ix_gene_disease_ref_disease ON pub1.gene_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:34:46 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_ref_disease ON pub1.gene_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:34:46 Duration: 0ms
27 8 62.66 MiB 8.00 KiB 17.11 MiB 7.83 MiB alter table pub1.chem_disease add constraint chem_disease_pk primary key (chem_id, disease_id);-
ALTER TABLE pub1.chem_disease ADD CONSTRAINT chem_disease_pk PRIMARY KEY (chem_id, disease_id);
Date: 2024-03-27 23:09:29 Duration: 0ms
28 5 622.80 MiB 122.89 MiB 126.38 MiB 124.56 MiB create index ix_gene_disease_network_score on pub1.gene_disease using btree (network_score);-
CREATE INDEX ix_gene_disease_network_score ON pub1.gene_disease USING btree (network_score);
Date: 2024-03-27 23:09:09 Duration: 14s165ms
-
CREATE INDEX ix_gene_disease_network_score ON pub1.gene_disease USING btree (network_score);
Date: 2024-03-27 23:09:09 Duration: 0ms
29 5 1.34 GiB 272.88 MiB 277.93 MiB 275.38 MiB create index ix_phenotype_term_ref_ids on pub1.phenotype_term_reference using btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_ids ON pub1.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-03-27 20:44:58 Duration: 13s759ms
-
CREATE INDEX ix_phenotype_term_ref_ids ON pub1.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-03-27 20:44:58 Duration: 0ms
30 5 981.13 MiB 188.45 MiB 202.71 MiB 196.23 MiB create index ix_phenotype_term_ref_reference_id on pub1.phenotype_term_reference using btree (reference_id);-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub1.phenotype_term_reference USING btree (reference_id);
Date: 2024-03-27 20:43:52 Duration: 10s127ms
-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub1.phenotype_term_reference USING btree (reference_id);
Date: 2024-03-27 20:43:52 Duration: 0ms
31 5 688.00 KiB 136.00 KiB 144.00 KiB 137.60 KiB create index ix_gene_disease_cur_ref_qty on pub1.gene_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_gene_disease_cur_ref_qty ON pub1.gene_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-03-27 23:09:16 Duration: 0ms
32 5 981.13 MiB 191.53 MiB 201.12 MiB 196.23 MiB create index ix_phenotype_term_reference_source_acc_db_id on pub1.phenotype_term_reference using btree (source_acc_db_id);-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub1.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:44:13 Duration: 7s355ms
-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub1.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:44:13 Duration: 0ms
33 5 981.13 MiB 156.67 MiB 212.09 MiB 196.23 MiB create index ix_phenotype_term_ref_object_type_id on pub1.phenotype_term_reference using btree (term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub1.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-03-27 20:43:42 Duration: 8s434ms
-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub1.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-03-27 20:43:42 Duration: 0ms
34 5 237.18 MiB 45.34 MiB 49.59 MiB 47.44 MiB create index ix_chem_disease_reference_ixn on pub1.chem_disease_reference using btree (ixn_id);-
CREATE INDEX ix_chem_disease_reference_ixn ON pub1.chem_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:45:19 Duration: 2s773ms
-
CREATE INDEX ix_chem_disease_reference_ixn ON pub1.chem_disease_reference USING btree (ixn_id);
Date: 2024-03-27 20:45:19 Duration: 0ms
35 5 61.88 MiB 12.02 MiB 12.55 MiB 12.38 MiB create index ix_phenotype_term_term_id on pub1.phenotype_term using btree (term_id);-
CREATE INDEX ix_phenotype_term_term_id ON pub1.phenotype_term USING btree (term_id);
Date: 2024-03-27 23:09:25 Duration: 0ms
36 5 61.88 MiB 10.88 MiB 13.03 MiB 12.38 MiB create index ix_phenotype_term_phenotype_id on pub1.phenotype_term using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_phenotype_id ON pub1.phenotype_term USING btree (phenotype_id);
Date: 2024-03-27 23:09:25 Duration: 0ms
37 5 153.52 MiB 29.48 MiB 31.73 MiB 30.70 MiB create index ix_term_enrich_tgt_match on pub1.term_enrichment using btree (target_match_qty);-
CREATE INDEX ix_term_enrich_tgt_match ON pub1.term_enrichment USING btree (target_match_qty);
Date: 2024-03-27 22:38:00 Duration: 1s804ms
-
CREATE INDEX ix_term_enrich_tgt_match ON pub1.term_enrichment USING btree (target_match_qty);
Date: 2024-03-27 22:38:00 Duration: 0ms
38 5 40.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_gene_disease_exp_ref_qty on pub1.gene_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_gene_disease_exp_ref_qty ON pub1.gene_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-03-27 23:09:23 Duration: 0ms
39 5 214.36 MiB 41.44 MiB 44.79 MiB 42.87 MiB create index ix_term_enrich_corr_p_val on pub1.term_enrichment using btree (corrected_p_val);-
CREATE INDEX ix_term_enrich_corr_p_val ON pub1.term_enrichment USING btree (corrected_p_val);
Date: 2024-03-27 22:38:06 Duration: 4s611ms
-
CREATE INDEX ix_term_enrich_corr_p_val ON pub1.term_enrichment USING btree (corrected_p_val);
Date: 2024-03-27 22:38:06 Duration: 0ms
40 5 237.18 MiB 46.57 MiB 48.29 MiB 47.44 MiB create index ix_chem_disease_ref_net_sc on pub1.chem_disease_reference using btree (network_score);-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub1.chem_disease_reference USING btree (network_score);
Date: 2024-03-27 20:45:27 Duration: 4s891ms
-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub1.chem_disease_reference USING btree (network_score);
Date: 2024-03-27 20:45:27 Duration: 0ms
41 5 237.19 MiB 45.55 MiB 49.95 MiB 47.44 MiB create index ix_chem_disease_reference_ref on pub1.chem_disease_reference using btree (reference_id);-
CREATE INDEX ix_chem_disease_reference_ref ON pub1.chem_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:45:10 Duration: 2s784ms
-
CREATE INDEX ix_chem_disease_reference_ref ON pub1.chem_disease_reference USING btree (reference_id);
Date: 2024-03-27 20:45:10 Duration: 0ms
42 5 237.19 MiB 45.73 MiB 48.79 MiB 47.44 MiB create index ix_chem_disease_ref_source_cd on pub1.chem_disease_reference using btree (source_cd);-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub1.chem_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:45:12 Duration: 1s911ms
-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub1.chem_disease_reference USING btree (source_cd);
Date: 2024-03-27 20:45:12 Duration: 0ms
43 5 981.14 MiB 194.33 MiB 198.30 MiB 196.23 MiB create index ix_phenotype_term_ref_taxon_id on pub1.phenotype_term_reference using btree (taxon_id);-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub1.phenotype_term_reference USING btree (taxon_id);
Date: 2024-03-27 20:43:59 Duration: 7s116ms
-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub1.phenotype_term_reference USING btree (taxon_id);
Date: 2024-03-27 20:43:59 Duration: 0ms
44 5 4.96 GiB 981.72 MiB 1.00 GiB 1015.54 MiB select distinct ptr.phenotype_id, cdr.disease_id, ( select id from pub1.object_type where cd = ?), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub1.object_type where cd = ?), cdr.mod_tm from pub1.chem_disease_reference cdr, pub1.phenotype_term_reference ptr where cdr.chem_id = ptr.term_id;-
SELECT DISTINCT ptr.phenotype_id, cdr.disease_id, ( select id from pub1.OBJECT_TYPE where cd = 'disease'), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), cdr.mod_tm FROM pub1.CHEM_DISEASE_REFERENCE cdr, pub1.PHENOTYPE_TERM_REFERENCE ptr WHERE cdr.chem_id = ptr.term_id;
Date: 2024-03-27 20:17:40 Duration: 0ms
45 5 981.13 MiB 191.61 MiB 201.34 MiB 196.23 MiB create index ix_phenotype_term_ref_evidence_cd on pub1.phenotype_term_reference using btree (evidence_cd);-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub1.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-03-27 20:44:06 Duration: 7s103ms
-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub1.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-03-27 20:44:06 Duration: 0ms
46 5 981.14 MiB 181.69 MiB 206.06 MiB 196.23 MiB create index ix_phenotype_term_ref_term_id on pub1.phenotype_term_reference using btree (term_id);-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub1.phenotype_term_reference USING btree (term_id);
Date: 2024-03-27 20:43:33 Duration: 9s783ms
-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub1.phenotype_term_reference USING btree (term_id);
Date: 2024-03-27 20:43:33 Duration: 0ms
47 5 237.19 MiB 45.01 MiB 48.27 MiB 47.44 MiB create index ix_chem_disease_reference_gene on pub1.chem_disease_reference using btree (via_gene_id);-
CREATE INDEX ix_chem_disease_reference_gene ON pub1.chem_disease_reference USING btree (via_gene_id);
Date: 2024-03-27 20:45:16 Duration: 2s690ms
-
CREATE INDEX ix_chem_disease_reference_gene ON pub1.chem_disease_reference USING btree (via_gene_id);
Date: 2024-03-27 20:45:16 Duration: 0ms
48 5 622.80 MiB 122.94 MiB 125.70 MiB 124.56 MiB create index ix_gene_disease_disease on pub1.gene_disease using btree (disease_id);-
CREATE INDEX ix_gene_disease_disease ON pub1.gene_disease USING btree (disease_id);
Date: 2024-03-27 23:09:15 Duration: 6s660ms
-
CREATE INDEX ix_gene_disease_disease ON pub1.gene_disease USING btree (disease_id);
Date: 2024-03-27 23:09:15 Duration: 0ms
49 5 981.13 MiB 191.77 MiB 200.38 MiB 196.23 MiB create index ix_phenotype_term_reference_ixn_id on pub1.phenotype_term_reference using btree (ixn_id);-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub1.phenotype_term_reference USING btree (ixn_id);
Date: 2024-03-27 20:44:34 Duration: 10s271ms
-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub1.phenotype_term_reference USING btree (ixn_id);
Date: 2024-03-27 20:44:34 Duration: 0ms
50 5 981.13 MiB 188.85 MiB 205.75 MiB 196.23 MiB create index ix_phenotype_term_reference_term_reference_id on pub1.phenotype_term_reference using btree (term_reference_id);-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub1.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-03-27 20:44:24 Duration: 10s303ms
-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub1.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-03-27 20:44:24 Duration: 0ms
51 5 622.66 MiB 123.64 MiB 125.22 MiB 124.53 MiB create index ix_gene_disease_ind_chem_qty on pub1.gene_disease using btree (indirect_chem_qty) where (indirect_chem_qty > ?);-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub1.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-03-27 23:09:23 Duration: 6s937ms
-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub1.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-03-27 23:09:23 Duration: 0ms
52 5 153.52 MiB 27.94 MiB 31.79 MiB 30.70 MiB create index ix_term_enrich_enr_obj_type on pub1.term_enrichment using btree (enriched_object_type_id);-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub1.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-03-27 22:38:01 Duration: 1s150ms
-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub1.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-03-27 22:38:01 Duration: 0ms
53 5 153.52 MiB 29.37 MiB 32.17 MiB 30.70 MiB create index ix_term_enrich_obj_type on pub1.term_enrichment using btree (object_type_id);-
CREATE INDEX ix_term_enrich_obj_type ON pub1.term_enrichment USING btree (object_type_id);
Date: 2024-03-27 22:37:58 Duration: 1s928ms
-
CREATE INDEX ix_term_enrich_obj_type ON pub1.term_enrichment USING btree (object_type_id);
Date: 2024-03-27 22:37:58 Duration: 0ms
54 5 214.34 MiB 42.40 MiB 43.22 MiB 42.87 MiB create index ix_term_enrich_raw_p_val on pub1.term_enrichment using btree (raw_p_val);-
CREATE INDEX ix_term_enrich_raw_p_val ON pub1.term_enrichment USING btree (raw_p_val);
Date: 2024-03-27 22:38:11 Duration: 4s767ms
-
CREATE INDEX ix_term_enrich_raw_p_val ON pub1.term_enrichment USING btree (raw_p_val);
Date: 2024-03-27 22:38:11 Duration: 0ms
55 5 237.18 MiB 44.80 MiB 49.62 MiB 47.44 MiB create index ix_chem_disease_ref_mod_tm on pub1.chem_disease_reference using btree (mod_tm);-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub1.chem_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:45:22 Duration: 2s735ms
-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub1.chem_disease_reference USING btree (mod_tm);
Date: 2024-03-27 20:45:22 Duration: 0ms
56 5 237.19 MiB 43.66 MiB 49.68 MiB 47.44 MiB create index ix_chem_disease_reference_dis on pub1.chem_disease_reference using btree (disease_id);-
CREATE INDEX ix_chem_disease_reference_dis ON pub1.chem_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:45:07 Duration: 2s738ms
-
CREATE INDEX ix_chem_disease_reference_dis ON pub1.chem_disease_reference USING btree (disease_id);
Date: 2024-03-27 20:45:07 Duration: 0ms
57 5 981.13 MiB 190.95 MiB 202.10 MiB 196.23 MiB create index ix_phenotype_term_ref_via_term_id on pub1.phenotype_term_reference using btree (via_term_id);-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub1.phenotype_term_reference USING btree (via_term_id);
Date: 2024-03-27 20:44:44 Duration: 10s430ms
-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub1.phenotype_term_reference USING btree (via_term_id);
Date: 2024-03-27 20:44:44 Duration: 0ms
58 5 237.19 MiB 40.96 MiB 54.16 MiB 47.44 MiB create index ix_chem_disease_ref_src_db on pub1.chem_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_chem_disease_ref_src_db ON pub1.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:45:14 Duration: 1s926ms
-
CREATE INDEX ix_chem_disease_ref_src_db ON pub1.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-03-27 20:45:14 Duration: 0ms
59 5 981.13 MiB 184.33 MiB 203.62 MiB 196.23 MiB create index ixn_phenotype_term_ref_phenotype_id on pub1.phenotype_term_reference using btree (phenotype_id);-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub1.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-03-27 20:43:23 Duration: 9s78ms
-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub1.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-03-27 20:43:23 Duration: 0ms
60 4 61.73 MiB 14.88 MiB 16.04 MiB 15.43 MiB create index ix_chem_disease_ind_gene_qty on pub1.chem_disease using btree (indirect_gene_qty) where (indirect_gene_qty > ?);-
CREATE INDEX ix_chem_disease_ind_gene_qty ON pub1.chem_disease USING btree (indirect_gene_qty) WHERE (indirect_gene_qty > 0);
Date: 2024-03-27 23:09:30 Duration: 0ms
61 4 62.62 MiB 13.52 MiB 16.68 MiB 15.66 MiB create index ix_chem_disease_network_score on pub1.chem_disease using btree (network_score);-
CREATE INDEX ix_chem_disease_network_score ON pub1.chem_disease USING btree (network_score);
Date: 2024-03-27 23:09:28 Duration: 1s434ms
-
CREATE INDEX ix_chem_disease_network_score ON pub1.chem_disease USING btree (network_score);
Date: 2024-03-27 23:09:28 Duration: 0ms
62 4 1.98 MiB 464.00 KiB 552.00 KiB 508.00 KiB create index ix_chem_disease_cur_ref_qty on pub1.chem_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_chem_disease_cur_ref_qty ON pub1.chem_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-03-27 23:09:30 Duration: 0ms
63 4 62.62 MiB 15.48 MiB 15.80 MiB 15.66 MiB create index ix_chem_disease_disease on pub1.chem_disease using btree (disease_id);-
CREATE INDEX ix_chem_disease_disease ON pub1.chem_disease USING btree (disease_id);
Date: 2024-03-27 23:09:29 Duration: 0ms
64 4 12.88 MiB 8.00 KiB 6.48 MiB 3.22 MiB alter table pub1.phenotype_term_axn add constraint phenotype_term_axn_pk primary key (phenotype_id, term_id, action_type_nm, action_degree_type_nm);-
ALTER TABLE pub1.phenotype_term_axn ADD CONSTRAINT phenotype_term_axn_pk PRIMARY KEY (phenotype_id, term_id, action_type_nm, action_degree_type_nm);
Date: 2024-03-27 23:09:26 Duration: 0ms
65 4 32.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_chem_disease_exp_ref_qty on pub1.chem_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_chem_disease_exp_ref_qty ON pub1.chem_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-03-27 23:09:30 Duration: 0ms
66 2 5.84 MiB 2.33 MiB 3.51 MiB 2.92 MiB create index ix_phenotype_term_axn_term_id on pub1.phenotype_term_axn using btree (term_id);-
CREATE INDEX ix_phenotype_term_axn_term_id ON pub1.phenotype_term_axn USING btree (term_id);
Date: 2024-03-27 23:09:27 Duration: 0ms
67 2 5.83 MiB 2.38 MiB 3.45 MiB 2.91 MiB create index ix_phenotype_term_axn_phenotype_id on pub1.phenotype_term_axn using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_axn_phenotype_id ON pub1.phenotype_term_axn USING btree (phenotype_id);
Date: 2024-03-27 23:09:26 Duration: 0ms
68 1 23.44 GiB 23.44 GiB 23.44 GiB 23.44 GiB select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);-
select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:59:18 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 23.44 GiB select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 18:59:18 ]
2 1.00 GiB SELECT * FROM pgbulkload.pg_bulkload ($1);[ Date: 2024-03-27 16:08:24 - Database: ctdprd51 - User: load - Application: pg_bulkload ]
3 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
4 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
5 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
6 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
7 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:29 ]
8 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
9 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
10 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
11 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
12 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
13 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
14 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
15 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
16 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
17 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
18 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
19 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
20 1.00 GiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;[ Date: 2024-03-27 19:38:30 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 248.98 sec Highest CPU-cost vacuum
Table pub1.gene_disease
Database ctdprd51 - 2024-03-27 23:44:30 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 248.98 sec Highest CPU-cost vacuum
Table pub1.gene_disease
Database ctdprd51 - 2024-03-27 23:44:30 Date
Analyzes per table
Key values
- pubc.log_query (16) Main table analyzed (database ctdprd51)
- 105 analyzes Total
Table Number of analyzes ctdprd51.pubc.log_query 16 ctdprd51.pg_catalog.pg_class 5 ctdprd51.pub1.term 3 ctdprd51.pg_catalog.pg_type 2 ctdprd51.pub1.dag_node 2 ctdprd51.pub1.db 2 ctdprd51.pg_catalog.pg_constraint 2 ctdprd51.pg_catalog.pg_shdepend 2 ctdprd51.pg_catalog.pg_depend 2 ctdprd51.pg_catalog.pg_trigger 2 ctdprd51.pg_catalog.pg_attribute 2 ctdprd51.pg_catalog.pg_index 2 ctdprd51.pub1.reference 2 ctdprd51.pub1.exp_receptor_race 1 ctdprd51.load.country 1 ctdprd51.pub1.exp_study_factor 1 ctdprd51.edit.db_report 1 ctdprd51.pub1.geographic_region 1 ctdprd51.pub1.chem_disease 1 ctdprd51.pub1.gene_go_annot 1 ctdprd51.pub1.term_label 1 ctdprd51.edit.db_report_site 1 ctdprd51.pub1.exp_receptor 1 ctdprd51.pub1.exp_stressor_stressor_src 1 ctdprd51.pub1.term_pathway 1 ctdprd51.pub1.exp_receptor_tobacco_use 1 ctdprd51.edit.db_link 1 ctdprd51.pub1.list_db_report 1 ctdprd51.edit.action_degree_type 1 ctdprd51.pub1.gene_gene_reference 1 ctdprd51.pub1.exposure 1 ctdprd51.edit.reference_db_link 1 ctdprd51.pub1.exp_event_assay_method 1 ctdprd51.edit.object_note 1 ctdprd51.pub1.reference_party 1 ctdprd51.pub1.exp_event_location 1 ctdprd51.edit.action_type 1 ctdprd51.pub1.exp_receptor_gender 1 ctdprd51.pub1.phenotype_term 1 ctdprd51.edit.db 1 ctdprd51.pg_catalog.pg_description 1 ctdprd51.pub1.db_report 1 ctdprd51.pg_catalog.pg_attrdef 1 ctdprd51.pub1.action_type 1 ctdprd51.edit.slim_term 1 ctdprd51.edit.term_label_type 1 ctdprd51.pub1.exp_stressor 1 ctdprd51.pub1.exp_event 1 ctdprd51.pub1.gene_gene 1 ctdprd51.pub1.dag_edge 1 ctdprd51.pub1.exp_anatomy 1 ctdprd51.load.medium 1 ctdprd51.edit.actor_form_type 1 ctdprd51.pub1.img 1 ctdprd51.pub1.reference_party_role 1 ctdprd51.pub2.term_set_enrichment_agent 1 ctdprd51.edit.list_db_report 1 ctdprd51.pub1.gene_disease 1 ctdprd51.pub1.exp_event_project 1 ctdprd51.pub1.slim_term_mapping 1 ctdprd51.pub1.gene_taxon 1 ctdprd51.edit.evidence 1 ctdprd51.pg_catalog.pg_proc 1 ctdprd51.pub1.exp_outcome 1 ctdprd51.pub1.gene_gene_ref_throughput 1 ctdprd51.load.geographic_region 1 ctdprd51.pub1.db_link 1 ctdprd51.pub1.country 1 ctdprd51.pub1.medium 1 ctdprd51.edit.action_degree 1 ctdprd51.pub1.ixn 1 ctdprd51.pub1.db_report_site 1 ctdprd51.pub1.reference_exp 1 ctdprd51.edit.action_type_path 1 Total 105 Vacuums per table
Key values
- pub1.term (3) Main table vacuumed on database ctdprd51
- 59 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pub1.term 3 1 521,502 0 2,535 0 0 384,416 46,471 191,672,244 ctdprd51.pg_catalog.pg_statistic 2 2 1,360 0 201 0 31 899 184 702,181 ctdprd51.pub1.dag_node 2 1 397,307 0 2,956 2 0 311,141 556 93,552,456 ctdprd51.pg_catalog.pg_class 2 2 679 0 85 0 0 315 72 352,795 ctdprd51.pub1.reference 2 1 301,985 0 8 1 0 161,894 5 12,903,936 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 1,164 0 3 0 0 547 1 40,692 ctdprd51.pg_catalog.pg_index 1 1 193 0 17 0 0 113 15 59,254 ctdprd51.edit.db_link 1 0 7,395 0 3 0 0 3,568 1 218,907 ctdprd51.pub1.term_pathway 1 0 3,337 0 3 0 0 1 1 2,649 ctdprd51.pub1.img 1 0 1,100 0 5 0 0 520 2 42,287 ctdprd51.pub1.reference_party_role 1 0 13,222 0 3 0 0 1 0 281 ctdprd51.pub1.dag_edge 1 0 1,053 0 5 0 0 482 2 40,381 ctdprd51.pub1.exp_anatomy 1 0 157 0 37 0 0 33 2 17,822 ctdprd51.pub1.exp_receptor 1 0 7,144 0 3 0 0 3,544 1 217,515 ctdprd51.pub1.exp_stressor_stressor_src 1 0 2,540 0 4 0 0 1,241 1 81,638 ctdprd51.pub1.exp_stressor 1 0 5,909 0 3 0 0 2,925 1 180,994 ctdprd51.pub1.chem_disease 1 1 259,044 0 9,440 0 0 158,346 9,429 114,409,755 ctdprd51.pub1.gene_gene 1 0 11,623 0 5 0 0 5,759 2 351,108 ctdprd51.pub1.gene_go_annot 1 0 454,292 0 197,026 0 0 227,042 8 13,455,987 ctdprd51.pub1.exp_event 1 0 12,158 0 4 0 0 6,001 2 365,574 ctdprd51.pub1.term_label 1 0 164,637 0 5 0 0 82,269 3 4,878,684 ctdprd51.pub1.exp_study_factor 1 0 79 0 15 0 0 11 2 16,064 ctdprd51.pg_toast.pg_toast_2619 1 1 4,981 0 767 0 10,247 3,970 709 489,090 ctdprd51.edit.db_report 1 1 112 0 8 0 0 13 5 25,012 ctdprd51.pg_catalog.pg_type 1 1 148 0 14 0 0 79 14 63,031 ctdprd51.pg_catalog.pg_attribute 1 1 790 0 84 0 53 487 72 336,610 ctdprd51.pub1.exp_receptor_race 1 0 1,312 0 3 0 0 621 1 45,058 ctdprd51.pubc.log_query 1 1 279 0 58 0 0 105 38 273,702 ctdprd51.pg_catalog.pg_trigger 1 1 390 0 40 0 0 175 35 146,303 ctdprd51.pub1.phenotype_term 1 1 201,777 0 577 0 0 154,803 39,660 104,106,835 ctdprd51.pub1.reference_exp 1 0 322 0 3 0 0 124 1 15,735 ctdprd51.pg_toast.pg_toast_4790139 1 0 86,323 0 3 0 0 1 1 7,605 ctdprd51.pub1.exp_receptor_gender 1 0 2,620 0 3 0 0 1,295 1 84,824 ctdprd51.edit.action_degree 1 1 56 0 2 0 0 16 1 10,625 ctdprd51.pub1.ixn 1 1 1,407,587 0 85 0 0 938,040 41,009 213,114,990 ctdprd51.pub1.db_link 1 0 212,726 0 94,001 0 0 106,245 4 6,301,465 ctdprd51.pub1.exp_event_location 1 0 3,369 0 4 0 0 1,633 2 109,626 ctdprd51.edit.reference_db_link 1 0 7,161 0 4 0 0 3,568 1 218,838 ctdprd51.pub1.exp_event_assay_method 1 0 4,707 0 4 0 0 2,308 2 152,047 ctdprd51.pg_catalog.pg_depend 1 1 698 0 51 0 65 314 62 220,838 ctdprd51.pub1.gene_gene_ref_throughput 1 0 14,003 0 3 0 0 6,979 1 420,180 ctdprd51.pub1.reference_party 1 0 5,081 0 3 0 0 1 1 2,645 ctdprd51.pg_catalog.pg_shdepend 1 1 228 0 19 0 0 110 18 83,939 ctdprd51.pub1.exp_outcome 1 0 568 0 4 0 0 210 2 24,501 ctdprd51.pub1.exposure 1 0 3,593 0 3 0 0 1,743 1 111,256 ctdprd51.pg_toast.pg_toast_4790070 1 1 90 0 3 0 0 49 9 11,890 ctdprd51.pub1.slim_term_mapping 1 0 632 0 4 0 0 261 2 26,182 ctdprd51.pub1.gene_taxon 1 0 122,200 0 5 0 0 61,044 2 3,618,212 ctdprd51.pub1.db 1 1 146 0 3 0 0 17 1 11,378 ctdprd51.pg_catalog.pg_constraint 1 1 305 0 36 0 0 143 30 132,963 ctdprd51.pub1.gene_gene_reference 1 0 29,270 0 3 0 0 14,559 1 867,400 ctdprd51.pub1.gene_disease 1 1 2,783,934 0 752,948 0 0 1,575,025 715,395 2,002,748,906 ctdprd51.pub1.exp_event_project 1 0 2,007 0 3 0 0 981 1 66,298 Total 59 24 7,065,295 141,284 1,061,114 3 10,396 4,225,987 853,843 2,767,411,188 Tuples removed per table
Key values
- pub1.gene_disease (32587930) Main table with removed tuples on database ctdprd51
- 43008369 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pub1.gene_disease 1 1 32,587,930 32,587,930 0 0 479,235 ctdprd51.pub1.chem_disease 1 1 3,276,111 3,276,111 0 0 48,128 ctdprd51.pub1.phenotype_term 1 1 3,236,557 3,236,557 0 0 60,497 ctdprd51.pub1.term 3 1 2,074,391 4,196,302 0 0 154,576 ctdprd51.pub1.dag_node 2 1 1,698,893 3,383,696 0 0 122,344 ctdprd51.pub1.reference 2 1 69,216 391,308 0 0 114,229 ctdprd51.pub1.ixn 1 1 51,678 2,183,999 0 0 515,515 ctdprd51.pg_toast.pg_toast_2619 1 1 5,010 19,469 0 0 12,592 ctdprd51.pg_catalog.pg_attribute 1 1 2,194 9,237 0 0 244 ctdprd51.pg_catalog.pg_depend 1 1 2,190 14,296 0 0 145 ctdprd51.pg_catalog.pg_statistic 2 2 1,236 3,467 0 0 580 ctdprd51.pg_catalog.pg_shdepend 1 1 713 2,222 0 0 24 ctdprd51.pg_catalog.pg_trigger 1 1 694 1,897 0 0 57 ctdprd51.pg_catalog.pg_index 1 1 321 1,244 0 0 41 ctdprd51.pg_catalog.pg_class 2 2 291 3,808 0 0 122 ctdprd51.pg_catalog.pg_constraint 1 1 279 930 0 0 44 ctdprd51.edit.action_degree 1 1 208 219 0 0 6 ctdprd51.pg_catalog.pg_type 1 1 163 1,207 0 0 35 ctdprd51.pub1.db 1 1 130 130 0 0 6 ctdprd51.edit.db_report 1 1 80 158 0 0 4 ctdprd51.pg_toast.pg_toast_4790070 1 1 70 69 0 0 21 ctdprd51.pubc.log_query 1 1 14 1,215 0 0 46 ctdprd51.pub1.exp_receptor_tobacco_use 1 0 0 77,488 0 0 546 ctdprd51.edit.db_link 1 0 0 320,321 0 0 3,567 ctdprd51.pub1.term_pathway 1 0 0 135,792 0 0 1,613 ctdprd51.pub1.img 1 0 0 50,342 0 0 519 ctdprd51.pub1.reference_party_role 1 0 0 1,212,784 0 0 6,556 ctdprd51.pub1.dag_edge 1 0 0 88,931 0 0 481 ctdprd51.pub1.exp_anatomy 1 0 0 3,707 0 0 32 ctdprd51.pub1.exp_receptor 1 0 0 188,362 0 0 3,543 ctdprd51.pub1.exp_stressor_stressor_src 1 0 0 280,158 0 0 1,240 ctdprd51.pub1.exp_stressor 1 0 0 204,875 0 0 2,924 ctdprd51.pub1.gene_gene 1 0 0 1,065,224 0 0 5,758 ctdprd51.pub1.gene_go_annot 1 0 0 35,647,576 0 0 227,041 ctdprd51.pub1.exp_event 1 0 0 204,875 0 0 6,000 ctdprd51.pub1.term_label 1 0 0 5,555,300 0 0 82,268 ctdprd51.pub1.exp_study_factor 1 0 0 1,605 0 0 10 ctdprd51.pub1.exp_receptor_race 1 0 0 95,732 0 0 620 ctdprd51.pub1.reference_exp 1 0 0 3,409 0 0 123 ctdprd51.pg_toast.pg_toast_4790139 1 0 0 233,392 0 0 43,153 ctdprd51.pub1.exp_receptor_gender 1 0 0 184,468 0 0 1,294 ctdprd51.pub1.db_link 1 0 0 14,742,300 0 0 106,244 ctdprd51.pub1.exp_event_location 1 0 0 246,037 0 0 1,632 ctdprd51.edit.reference_db_link 1 0 0 320,321 0 0 3,567 ctdprd51.pub1.exp_event_assay_method 1 0 0 231,998 0 0 2,307 ctdprd51.pub1.gene_gene_ref_throughput 1 0 0 1,342,379 0 0 6,978 ctdprd51.pub1.reference_party 1 0 0 445,655 0 0 2,489 ctdprd51.pub1.exp_outcome 1 0 0 10,209 0 0 209 ctdprd51.pub1.exposure 1 0 0 211,632 0 0 1,742 ctdprd51.pub1.slim_term_mapping 1 0 0 32,777 0 0 260 ctdprd51.pub1.gene_taxon 1 0 0 9,583,816 0 0 61,043 ctdprd51.pub1.gene_gene_reference 1 0 0 1,336,788 0 0 14,558 ctdprd51.pub1.exp_event_project 1 0 0 93,963 0 0 980 Total 59 24 43,008,369 123,467,687 0 0 2,097,788 Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Pages removed per tables
NO DATASET
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pub1.exp_receptor_tobacco_use 1 0 0 0 ctdprd51.pg_catalog.pg_index 1 1 321 0 ctdprd51.edit.db_link 1 0 0 0 ctdprd51.pub1.term_pathway 1 0 0 0 ctdprd51.pub1.img 1 0 0 0 ctdprd51.pub1.reference_party_role 1 0 0 0 ctdprd51.pub1.dag_edge 1 0 0 0 ctdprd51.pub1.exp_anatomy 1 0 0 0 ctdprd51.pub1.exp_receptor 1 0 0 0 ctdprd51.pub1.exp_stressor_stressor_src 1 0 0 0 ctdprd51.pg_catalog.pg_statistic 2 2 1236 0 ctdprd51.pub1.exp_stressor 1 0 0 0 ctdprd51.pub1.chem_disease 1 1 3276111 0 ctdprd51.pub1.gene_gene 1 0 0 0 ctdprd51.pub1.gene_go_annot 1 0 0 0 ctdprd51.pub1.exp_event 1 0 0 0 ctdprd51.pub1.term_label 1 0 0 0 ctdprd51.pub1.term 3 1 2074391 0 ctdprd51.pub1.exp_study_factor 1 0 0 0 ctdprd51.pg_toast.pg_toast_2619 1 1 5010 0 ctdprd51.edit.db_report 1 1 80 0 ctdprd51.pg_catalog.pg_type 1 1 163 0 ctdprd51.pg_catalog.pg_attribute 1 1 2194 0 ctdprd51.pub1.exp_receptor_race 1 0 0 0 ctdprd51.pub1.dag_node 2 1 1698893 0 ctdprd51.pubc.log_query 1 1 14 0 ctdprd51.pg_catalog.pg_trigger 1 1 694 0 ctdprd51.pg_catalog.pg_class 2 2 291 0 ctdprd51.pub1.phenotype_term 1 1 3236557 0 ctdprd51.pub1.reference_exp 1 0 0 0 ctdprd51.pg_toast.pg_toast_4790139 1 0 0 0 ctdprd51.pub1.exp_receptor_gender 1 0 0 0 ctdprd51.edit.action_degree 1 1 208 0 ctdprd51.pub1.ixn 1 1 51678 0 ctdprd51.pub1.db_link 1 0 0 0 ctdprd51.pub1.exp_event_location 1 0 0 0 ctdprd51.edit.reference_db_link 1 0 0 0 ctdprd51.pub1.exp_event_assay_method 1 0 0 0 ctdprd51.pg_catalog.pg_depend 1 1 2190 0 ctdprd51.pub1.gene_gene_ref_throughput 1 0 0 0 ctdprd51.pub1.reference_party 1 0 0 0 ctdprd51.pg_catalog.pg_shdepend 1 1 713 0 ctdprd51.pub1.exp_outcome 1 0 0 0 ctdprd51.pub1.exposure 1 0 0 0 ctdprd51.pg_toast.pg_toast_4790070 1 1 70 0 ctdprd51.pub1.slim_term_mapping 1 0 0 0 ctdprd51.pub1.gene_taxon 1 0 0 0 ctdprd51.pub1.db 1 1 130 0 ctdprd51.pg_catalog.pg_constraint 1 1 279 0 ctdprd51.pub1.gene_gene_reference 1 0 0 0 ctdprd51.pub1.reference 2 1 69216 0 ctdprd51.pub1.gene_disease 1 1 32587930 0 ctdprd51.pub1.exp_event_project 1 0 0 0 Total 59 24 43,008,369 0 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Mar 27 00 0 1 01 0 1 02 0 2 03 0 1 04 0 1 05 0 3 06 0 1 07 0 0 08 0 2 09 0 1 10 0 1 11 0 0 12 0 20 13 0 2 14 0 0 15 0 15 16 0 3 17 0 19 18 0 0 19 0 1 20 0 0 21 0 0 22 0 2 23 0 29 - 248.98 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 445 Total read queries
- 308 Total write queries
Queries by database
Key values
- unknown Main database
- 505 Requests
- 5h20m56s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 754 Requests
User Request type Count Duration load Total 35 23m20s others 1 2s644ms select 34 23m17s postgres Total 16 5m43s copy to 16 5m43s pub1 Total 6 11m32s ddl 1 4s442ms insert 3 11m17s select 2 9s785ms pubeu Total 370 48m49s cte 57 2m18s select 313 46m31s qaeu Total 10 32s643ms cte 2 6s724ms select 8 25s918ms unknown Total 754 5h36m22s copy to 61 7m7s cte 129 4m59s ddl 49 37m2s insert 25 36m6s others 10 2m44s select 471 3h36m8s update 9 32m14s Duration by user
Key values
- 5h36m22s (unknown) Main time consuming user
User Request type Count Duration load Total 35 23m20s others 1 2s644ms select 34 23m17s postgres Total 16 5m43s copy to 16 5m43s pub1 Total 6 11m32s ddl 1 4s442ms insert 3 11m17s select 2 9s785ms pubeu Total 370 48m49s cte 57 2m18s select 313 46m31s qaeu Total 10 32s643ms cte 2 6s724ms select 8 25s918ms unknown Total 754 5h36m22s copy to 61 7m7s cte 129 4m59s ddl 49 37m2s insert 25 36m6s others 10 2m44s select 471 3h36m8s update 9 32m14s Queries by host
Key values
- unknown Main host
- 1,191 Requests
- 7h6m21s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 728 Requests
- 6h17m53s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-03-27 02:13:20 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 643 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 35m48s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 19:38:27 - Bind query: yes ]
2 35m41s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 20:14:14 - Bind query: yes ]
3 33m58s SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;[ Date: 2024-03-27 18:13:08 - Bind query: yes ]
4 24m20s update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));[ Date: 2024-03-27 23:39:25 - Bind query: yes ]
5 21m15s insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;[ Date: 2024-03-27 17:31:16 - Bind query: yes ]
6 17m2s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-03-27 11:20:14 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
7 14m55s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-03-27 00:14:56 ]
8 12m7s ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);[ Date: 2024-03-27 22:50:19 - Bind query: yes ]
9 10m48s insert into pub1.DB_LINK (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.DB_LINK;[ Date: 2024-03-27 17:04:54 - Database: ctdprd51 - User: pub1 - Bind query: yes ]
10 9m59s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;[ Date: 2024-03-27 17:47:32 - Bind query: yes ]
11 9m28s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;[ Date: 2024-03-27 17:46:57 - Bind query: yes ]
12 9m27s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;[ Date: 2024-03-27 17:46:55 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
13 9m27s select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');[ Date: 2024-03-27 18:25:17 - Database: ctdprd51 - User: load - Bind query: yes ]
14 9m27s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;[ Date: 2024-03-27 17:46:58 - Bind query: yes ]
15 9m25s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;[ Date: 2024-03-27 17:46:47 - Bind query: yes ]
16 6m24s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');[ Date: 2024-03-27 20:24:57 - Database: ctdprd51 - User: load - Application: pg_bulkload - Bind query: yes ]
17 5m21s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');[ Date: 2024-03-27 20:52:22 - Bind query: yes ]
18 3m32s insert into pub1.GENE_TAXON (gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd) select gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd from load.GENE_TAXON;[ Date: 2024-03-27 17:34:49 - Bind query: yes ]
19 3m24s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');[ Date: 2024-03-27 15:49:25 - Bind query: yes ]
20 2m59s CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);[ Date: 2024-03-27 20:30:14 - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 47m49s 5 9m25s 9m59s 9m33s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by diseaseterm.nm_sort, phenotypeterm.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Mar 27 17 5 47m49s 9m33s [ User: pubeu - Total duration: 9m27s - Times executed: 1 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:47:32 Duration: 9m59s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:57 Duration: 9m28s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:55 Duration: 9m27s Database: ctdprd51 User: pubeu Bind query: yes
2 42m59s 76 1s11ms 6m24s 33s938ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Mar 27 15 31 12m28s 24s129ms 16 12 7m21s 36s785ms 18 6 1m6s 11s71ms 20 5 14m6s 2m49s 21 1 26s628ms 26s628ms 22 18 7m7s 23s743ms 23 3 22s842ms 7s614ms [ User: load - Total duration: 13m29s - Times executed: 27 ]
[ Application: pg_bulkload - Total duration: 13m29s - Times executed: 27 ]
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s Bind query: yes
3 35m48s 1 35m48s 35m48s 35m48s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Mar 27 19 1 35m48s 35m48s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 19:38:27 Duration: 35m48s Bind query: yes
4 35m41s 1 35m41s 35m41s 35m41s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Mar 27 20 1 35m41s 35m41s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 20:14:14 Duration: 35m41s Bind query: yes
5 33m58s 1 33m58s 33m58s 33m58s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Mar 27 18 1 33m58s 33m58s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-03-27 18:13:08 Duration: 33m58s Bind query: yes
6 24m20s 1 24m20s 24m20s 24m20s update pub1.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Mar 27 23 1 24m20s 24m20s -
update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-03-27 23:39:25 Duration: 24m20s Bind query: yes
7 21m15s 1 21m15s 21m15s 21m15s insert into pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Mar 27 17 1 21m15s 21m15s -
insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-03-27 17:31:16 Duration: 21m15s Bind query: yes
8 17m10s 5 1s614ms 17m2s 3m26s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Mar 27 11 1 17m2s 17m2s 16 1 1s973ms 1s973ms 17 1 1s687ms 1s687ms 19 1 1s614ms 1s614ms 21 1 3s193ms 3s193ms [ User: pubeu - Total duration: 17m3s - Times executed: 2 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 11:20:14 Duration: 17m2s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1204159') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 21:26:52 Duration: 3s193ms Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1204158') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 16:43:09 Duration: 1s973ms Bind query: yes
9 14m55s 1 14m55s 14m55s 14m55s select maint_query_logs_archive ();Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Mar 27 00 1 14m55s 14m55s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-27 00:14:56 Duration: 14m55s
10 12m52s 21 2s138ms 9m27s 36s805ms select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub1.gene_chem_reference gcr, pub1.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Mar 27 18 21 12m52s 36s805ms [ User: load - Total duration: 9m27s - Times executed: 1 ]
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:25:17 Duration: 9m27s Database: ctdprd51 User: load Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:46:08 Duration: 43s231ms Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:41:00 Duration: 42s444ms Bind query: yes
11 12m7s 1 12m7s 12m7s 12m7s alter table pub1.term_enrichment_agent add constraint term_enr_agent_term_enr_fk foreign key (term_id, enriched_term_id) references term_enrichment (term_id, enriched_term_id);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Mar 27 22 1 12m7s 12m7s -
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);
Date: 2024-03-27 22:50:19 Duration: 12m7s Bind query: yes
12 10m48s 1 10m48s 10m48s 10m48s insert into pub1.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.db_link;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Mar 27 17 1 10m48s 10m48s [ User: pub1 - Total duration: 10m48s - Times executed: 1 ]
-
insert into pub1.DB_LINK (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.DB_LINK;
Date: 2024-03-27 17:04:54 Duration: 10m48s Database: ctdprd51 User: pub1 Bind query: yes
13 7m8s 182 1s24ms 3s858ms 2s356ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Mar 27 00 1 2s444ms 2s444ms 05 4 8s797ms 2s199ms 06 2 5s327ms 2s663ms 10 1 3s262ms 3s262ms 16 16 36s478ms 2s279ms 17 28 1m5s 2s348ms 18 29 1m6s 2s295ms 19 15 34s533ms 2s302ms 20 21 50s785ms 2s418ms 21 30 1m9s 2s308ms 22 25 1m2s 2s505ms 23 10 22s951ms 2s295ms [ User: pubeu - Total duration: 2m14s - Times executed: 56 ]
[ User: qaeu - Total duration: 3s358ms - Times executed: 1 ]
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 22:53:34 Duration: 3s858ms Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 22:06:43 Duration: 3s527ms Database: ctdprd51 User: pubeu Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 17:14:11 Duration: 3s457ms Bind query: yes
14 3m45s 53 3s899ms 13s817ms 4s258ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Mar 27 01 7 28s464ms 4s66ms 03 2 7s965ms 3s982ms 04 3 12s180ms 4s60ms 05 1 3s957ms 3s957ms 06 8 41s892ms 5s236ms 08 2 7s962ms 3s981ms 09 2 8s284ms 4s142ms 10 1 4s 4s 11 5 20s15ms 4s3ms 14 4 16s16ms 4s4ms 15 1 4s282ms 4s282ms 16 3 12s614ms 4s204ms 17 2 8s81ms 4s40ms 18 5 21s194ms 4s238ms 21 1 4s278ms 4s278ms 22 2 8s107ms 4s53ms 23 4 16s420ms 4s105ms [ User: pubeu - Total duration: 1m20s - Times executed: 20 ]
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 06:31:48 Duration: 13s817ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1362779') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1362779') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 18:48:46 Duration: 4s630ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1298413') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1298413') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 16:20:53 Duration: 4s455ms Bind query: yes
15 3m32s 1 3m32s 3m32s 3m32s insert into pub1.gene_taxon (gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd) select gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd from load.gene_taxon;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Mar 27 17 1 3m32s 3m32s -
insert into pub1.GENE_TAXON (gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd) select gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd from load.GENE_TAXON;
Date: 2024-03-27 17:34:49 Duration: 3m32s Bind query: yes
16 2m59s 1 2m59s 2m59s 2m59s create unique index gene_disease_reference_ak1 on pub1.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Mar 27 20 1 2m59s 2m59s -
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:14 Duration: 2m59s Bind query: yes
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:13 Duration: 0ms
17 2m59s 1 2m59s 2m59s 2m59s insert into pub1.term_label (id, object_type_id, term_id, term_label_type_id, nm) select l.id, t.object_type_id, l.term_id, l.term_label_type_id, l.nm from load.term t, load.term_label l where t.id = l.term_id and t.id in ( select id from pub1.term);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Mar 27 17 1 2m59s 2m59s -
INSERT INTO pub1.TERM_LABEL (id, object_type_id, term_id, term_label_type_id, nm) select l.id, t.object_type_id, l.term_id, l.term_label_type_id, l.nm from load.TERM t, load.TERM_LABEL l where t.id = l.term_id and t.id in ( select id from pub1.TERM);
Date: 2024-03-27 17:10:01 Duration: 2m59s Bind query: yes
18 2m52s 1 2m52s 2m52s 2m52s alter table pub1.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Mar 27 22 1 2m52s 2m52s -
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:11 Duration: 2m52s Bind query: yes
-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:10 Duration: 0ms
19 2m20s 1 2m20s 2m20s 2m20s create index ix_gene_disease_ref_net_sc on pub1.gene_disease_reference using btree (network_score);Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Mar 27 20 1 2m20s 2m20s -
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:03 Duration: 2m20s Bind query: yes
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:02 Duration: 0ms
20 2m7s 1 2m7s 2m7s 2m7s update pub1.phenotype_term pt set exposure_reference_qty = ( select count(distinct reference_id) from pub1.phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Mar 27 23 1 2m7s 2m7s -
update pub1.PHENOTYPE_TERM pt set exposure_reference_qty = ( select count(distinct reference_id) from pub1.PHENOTYPE_TERM_REFERENCE ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-03-27 23:41:33 Duration: 2m7s Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 182 7m8s 1s24ms 3s858ms 2s356ms with recursive sub_node ( object_id, id, path, lvl ) as ( select n.object_id, n.id, array[n.nm_sort], ? from dag_node n where n.object_id = ? union all select n.object_id, n.id, cast(path || n.nm_sort as varchar(?)[]), sn.lvl + ? from dag_node n inner join sub_node sn on (n.parent_id = sn.id)) select distinct t.nm prinm, t.nm_html prinmhtml, t.secondary_nm secondarynm, t.acc_db_cd accdbcd, t.acc_txt termacc, t.is_leaf isleaf, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_genes hasgenes, sn.lvl, sn.path, max(sn.lvl) over () maxlvl, t.has_phenotypes hasphenotypes from sub_node sn inner join term t on sn.object_id = t.id where sn.lvl <= ? order by sn.path;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Mar 27 00 1 2s444ms 2s444ms 05 4 8s797ms 2s199ms 06 2 5s327ms 2s663ms 10 1 3s262ms 3s262ms 16 16 36s478ms 2s279ms 17 28 1m5s 2s348ms 18 29 1m6s 2s295ms 19 15 34s533ms 2s302ms 20 21 50s785ms 2s418ms 21 30 1m9s 2s308ms 22 25 1m2s 2s505ms 23 10 22s951ms 2s295ms [ User: pubeu - Total duration: 2m14s - Times executed: 56 ]
[ User: qaeu - Total duration: 3s358ms - Times executed: 1 ]
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 22:53:34 Duration: 3s858ms Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 22:06:43 Duration: 3s527ms Database: ctdprd51 User: pubeu Bind query: yes
-
WITH recursive sub_node ( object_id, id, path, lvl ) AS ( SELECT n.object_id, n.id, ARRAY[n.nm_sort], 1 FROM dag_node n WHERE n.object_id = '646767' UNION ALL SELECT n.object_id, n.id, CAST(path || n.nm_sort AS varchar(600)[]), sn.lvl + 1 FROM dag_node n INNER JOIN sub_node sn ON (n.parent_id = sn.id)) SELECT /* TreeTermBasicsDAO.getDescendants */ DISTINCT t.nm priNm, t.nm_html priNmHtml, t.secondary_nm secondaryNm, t.acc_db_cd accDbCd, t.acc_txt termAcc, t.is_leaf isLeaf, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_genes hasGenes, sn.lvl, sn.path, MAX(sn.lvl) OVER () maxLvl, t.has_phenotypes hasPhenotypes FROM sub_node sn INNER JOIN term t ON sn.object_id = t.id WHERE sn.lvl <= 4 ORDER BY sn.path;
Date: 2024-03-27 17:14:11 Duration: 3s457ms Bind query: yes
2 76 42m59s 1s11ms 6m24s 33s938ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Mar 27 15 31 12m28s 24s129ms 16 12 7m21s 36s785ms 18 6 1m6s 11s71ms 20 5 14m6s 2m49s 21 1 26s628ms 26s628ms 22 18 7m7s 23s743ms 23 3 22s842ms 7s614ms [ User: load - Total duration: 13m29s - Times executed: 27 ]
[ Application: pg_bulkload - Total duration: 13m29s - Times executed: 27 ]
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s Bind query: yes
3 53 3m45s 3s899ms 13s817ms 4s258ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Mar 27 01 7 28s464ms 4s66ms 03 2 7s965ms 3s982ms 04 3 12s180ms 4s60ms 05 1 3s957ms 3s957ms 06 8 41s892ms 5s236ms 08 2 7s962ms 3s981ms 09 2 8s284ms 4s142ms 10 1 4s 4s 11 5 20s15ms 4s3ms 14 4 16s16ms 4s4ms 15 1 4s282ms 4s282ms 16 3 12s614ms 4s204ms 17 2 8s81ms 4s40ms 18 5 21s194ms 4s238ms 21 1 4s278ms 4s278ms 22 2 8s107ms 4s53ms 23 4 16s420ms 4s105ms [ User: pubeu - Total duration: 1m20s - Times executed: 20 ]
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 06:31:48 Duration: 13s817ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1362779') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1362779') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 18:48:46 Duration: 4s630ms Bind query: yes
-
SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1298413') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1298413') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-03-27 16:20:53 Duration: 4s455ms Bind query: yes
4 31 39s100ms 1s239ms 1s367ms 1s261ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Mar 27 00 1 1s243ms 1s243ms 01 2 2s496ms 1s248ms 02 1 1s244ms 1s244ms 03 3 3s738ms 1s246ms 04 3 3s735ms 1s245ms 05 3 3s776ms 1s258ms 07 2 2s508ms 1s254ms 08 1 1s239ms 1s239ms 11 2 2s496ms 1s248ms 12 2 2s514ms 1s257ms 13 1 1s284ms 1s284ms 14 2 2s495ms 1s247ms 16 1 1s286ms 1s286ms 17 1 1s245ms 1s245ms 18 1 1s250ms 1s250ms 20 1 1s367ms 1s367ms 21 3 3s855ms 1s285ms 22 1 1s321ms 1s321ms [ User: pubeu - Total duration: 23s886ms - Times executed: 19 ]
-
SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-03-27 20:28:16 Duration: 1s367ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-03-27 22:53:04 Duration: 1s321ms Bind query: yes
-
SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-03-27 21:35:39 Duration: 1s311ms Bind query: yes
5 29 1m38s 1s171ms 12s541ms 3s386ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Mar 27 03 2 5s26ms 2s513ms 04 2 3s960ms 1s980ms 05 1 2s18ms 2s18ms 06 1 5s18ms 5s18ms 07 1 2s166ms 2s166ms 08 1 1s379ms 1s379ms 10 2 5s361ms 2s680ms 11 2 5s421ms 2s710ms 12 1 4s318ms 4s318ms 13 4 25s875ms 6s468ms 14 4 13s828ms 3s457ms 16 2 5s509ms 2s754ms 17 1 2s318ms 2s318ms 19 1 7s233ms 7s233ms 20 2 4s453ms 2s226ms 21 2 4s327ms 2s163ms [ User: pubeu - Total duration: 1m17s - Times executed: 22 ]
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2048764') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 13:20:30 Duration: 12s541ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2055477') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 19:52:51 Duration: 7s233ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2058910') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 14:38:42 Duration: 6s727ms Database: ctdprd51 User: pubeu Bind query: yes
6 21 12m52s 2s138ms 9m27s 36s805ms select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub1.gene_chem_reference gcr, pub1.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Mar 27 18 21 12m52s 36s805ms [ User: load - Total duration: 9m27s - Times executed: 1 ]
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:25:17 Duration: 9m27s Database: ctdprd51 User: load Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:46:08 Duration: 43s231ms Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:41:00 Duration: 42s444ms Bind query: yes
7 20 25s334ms 1s182ms 1s494ms 1s266ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Mar 27 00 1 1s257ms 1s257ms 04 1 1s185ms 1s185ms 05 3 4s160ms 1s386ms 06 1 1s212ms 1s212ms 10 1 1s242ms 1s242ms 11 1 1s277ms 1s277ms 12 1 1s286ms 1s286ms 13 1 1s201ms 1s201ms 14 1 1s278ms 1s278ms 15 2 2s447ms 1s223ms 16 1 1s250ms 1s250ms 18 2 2s532ms 1s266ms 19 1 1s292ms 1s292ms 20 1 1s247ms 1s247ms 23 2 2s460ms 1s230ms [ User: pubeu - Total duration: 15s155ms - Times executed: 12 ]
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2053466') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2053466') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:32:04 Duration: 1s494ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2049098') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2049098') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:43:38 Duration: 1s346ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2049098') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2049098') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:38:34 Duration: 1s320ms Bind query: yes
8 19 21s223ms 1s54ms 1s231ms 1s117ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Mar 27 05 2 2s402ms 1s201ms 06 1 1s86ms 1s86ms 07 1 1s71ms 1s71ms 08 3 3s201ms 1s67ms 11 1 1s85ms 1s85ms 16 4 4s509ms 1s127ms 17 1 1s119ms 1s119ms 18 3 3s295ms 1s98ms 21 1 1s139ms 1s139ms 22 2 2s312ms 1s156ms [ User: pubeu - Total duration: 8s845ms - Times executed: 8 ]
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1422989' or receptorTerm.id = '1422989' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:43:37 Duration: 1s231ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1422989' or receptorTerm.id = '1422989' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:38:33 Duration: 1s170ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2046524' or receptorTerm.id = '2046524' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 22:18:46 Duration: 1s159ms Database: ctdprd51 User: pubeu Bind query: yes
9 16 32s25ms 1s92ms 7s454ms 2s1ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Mar 27 02 4 4s495ms 1s123ms 03 1 1s127ms 1s127ms 04 1 2s189ms 2s189ms 05 5 9s616ms 1s923ms 09 2 3s937ms 1s968ms 10 1 7s454ms 7s454ms 21 2 3s205ms 1s602ms [ User: pubeu - Total duration: 17s112ms - Times executed: 7 ]
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2057461') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-03-27 10:43:13 Duration: 7s454ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2053466') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-03-27 05:05:22 Duration: 2s228ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2053466') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-03-27 04:41:14 Duration: 2s189ms Database: ctdprd51 User: pubeu Bind query: yes
10 14 20s262ms 1s377ms 1s718ms 1s447ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Mar 27 02 1 1s397ms 1s397ms 04 1 1s382ms 1s382ms 05 2 2s756ms 1s378ms 07 1 1s391ms 1s391ms 10 2 2s838ms 1s419ms 15 2 2s976ms 1s488ms 16 1 1s449ms 1s449ms 17 2 2s836ms 1s418ms 21 1 1s515ms 1s515ms 23 1 1s718ms 1s718ms [ User: pubeu - Total duration: 16s1ms - Times executed: 11 ]
-
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-03-27 23:36:56 Duration: 1s718ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-03-27 21:57:26 Duration: 1s515ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-03-27 15:55:59 Duration: 1s507ms Database: ctdprd51 User: pubeu Bind query: yes
11 12 56s697ms 1s14ms 6s50ms 4s724ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Mar 27 00 1 5s557ms 5s557ms 02 2 6s285ms 3s142ms 03 1 5s303ms 5s303ms 09 1 1s14ms 1s14ms 10 2 10s394ms 5s197ms 16 1 5s269ms 5s269ms 20 2 10s864ms 5s432ms 22 1 5s956ms 5s956ms 23 1 6s50ms 6s50ms [ User: pubeu - Total duration: 16s971ms - Times executed: 4 ]
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1369245' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-03-27 23:32:38 Duration: 6s50ms Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1283274' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-03-27 22:09:54 Duration: 5s956ms Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1248569' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-03-27 00:54:31 Duration: 5s557ms Bind query: yes
12 10 28s314ms 1s205ms 3s388ms 2s831ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Mar 27 06 10 28s314ms 2s831ms [ User: pubeu - Total duration: 21s927ms - Times executed: 8 ]
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'SEMAGLUTIDE') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'SEMAGLUTIDE') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEMAGLUTIDE')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'SEMAGLUTIDE')) ii GROUP BY ii.cd;
Date: 2024-03-27 06:22:37 Duration: 3s388ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'SEMAGLUTIDE') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'SEMAGLUTIDE') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEMAGLUTIDE')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'SEMAGLUTIDE')) ii GROUP BY ii.cd;
Date: 2024-03-27 06:22:37 Duration: 3s292ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'SEMAGLUTIDE') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'SEMAGLUTIDE') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SEMAGLUTIDE')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'SEMAGLUTIDE')) ii GROUP BY ii.cd;
Date: 2024-03-27 06:22:37 Duration: 3s216ms Bind query: yes
13 9 11s267ms 1s186ms 1s341ms 1s251ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Mar 27 05 2 2s631ms 1s315ms 08 1 1s199ms 1s199ms 09 1 1s186ms 1s186ms 14 2 2s547ms 1s273ms 15 1 1s212ms 1s212ms 23 2 2s490ms 1s245ms [ User: pubeu - Total duration: 3s620ms - Times executed: 3 ]
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1204162') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1204162') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:43:35 Duration: 1s341ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1203524') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1203524') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 14:40:22 Duration: 1s329ms Bind query: yes
-
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1204162') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1204162') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-03-27 05:38:31 Duration: 1s290ms Bind query: yes
14 7 27s780ms 1s356ms 11s554ms 3s968ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ? offset ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Mar 27 11 3 8s229ms 2s743ms 17 1 11s554ms 11s554ms 22 2 6s639ms 3s319ms 23 1 1s356ms 1s356ms [ User: pubeu - Total duration: 9s375ms - Times executed: 3 ]
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2051475') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 1525050;
Date: 2024-03-27 17:29:29 Duration: 11s554ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2051475') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 400;
Date: 2024-03-27 22:11:52 Duration: 4s520ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2057461') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50 OFFSET 350;
Date: 2024-03-27 11:13:02 Duration: 2s773ms Bind query: yes
15 6 11s892ms 1s80ms 2s442ms 1s982ms select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where diseaseterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Mar 27 12 1 2s220ms 2s220ms 14 1 2s318ms 2s318ms 18 3 4s911ms 1s637ms 22 1 2s442ms 2s442ms [ User: pubeu - Total duration: 4s662ms - Times executed: 2 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2047455') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 22:37:42 Duration: 2s442ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2047455') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 14:46:49 Duration: 2s318ms Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2047455') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 18:58:24 Duration: 2s287ms Bind query: yes
16 5 47m49s 9m25s 9m59s 9m33s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by diseaseterm.nm_sort, phenotypeterm.nm_sort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Mar 27 17 5 47m49s 9m33s [ User: pubeu - Total duration: 9m27s - Times executed: 1 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:47:32 Duration: 9m59s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:57 Duration: 9m28s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:55 Duration: 9m27s Database: ctdprd51 User: pubeu Bind query: yes
17 5 17m10s 1s614ms 17m2s 3m26s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Mar 27 11 1 17m2s 17m2s 16 1 1s973ms 1s973ms 17 1 1s687ms 1s687ms 19 1 1s614ms 1s614ms 21 1 3s193ms 3s193ms [ User: pubeu - Total duration: 17m3s - Times executed: 2 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 11:20:14 Duration: 17m2s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1204159') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 21:26:52 Duration: 3s193ms Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1204158') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 16:43:09 Duration: 1s973ms Bind query: yes
18 5 34s548ms 6s878ms 6s935ms 6s909ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select term_id from term_label tl where upper(tl.nm) = ? and tl.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Mar 27 08 4 27s618ms 6s904ms 09 1 6s929ms 6s929ms [ User: pubeu - Total duration: 13s832ms - Times executed: 2 ]
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = '4,4''-HEXAFLUORISOPROPYLIDENE DIPHENOL' AND tl.object_type_id = 2))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 08:50:22 Duration: 6s935ms Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'DIMETHYLPHOSPHATE' AND tl.object_type_id = 2))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 09:18:16 Duration: 6s929ms Database: ctdprd51 User: pubeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = '4,4''-HEXAFLUORISOPROPYLIDENE DIPHENOL' AND tl.object_type_id = 2))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 08:46:54 Duration: 6s902ms Database: ctdprd51 User: pubeu Bind query: yes
19 5 33s29ms 2s716ms 12s434ms 6s605ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Mar 27 08 2 24s796ms 12s398ms 10 2 5s516ms 2s758ms 11 1 2s716ms 2s716ms [ User: pubeu - Total duration: 12s362ms - Times executed: 1 ]
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 08:31:02 Duration: 12s434ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 08:30:58 Duration: 12s362ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2057461') ORDER BY gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 10:49:29 Duration: 2s781ms Bind query: yes
20 5 15s267ms 1s201ms 5s945ms 3s53ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Mar 27 14 1 1s201ms 1s201ms 15 2 8s676ms 4s338ms 19 2 5s389ms 2s694ms [ User: pubeu - Total duration: 15s267ms - Times executed: 5 ]
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1379157'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 15:19:48 Duration: 5s945ms Database: ctdprd51 User: pubeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1418309'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 19:18:24 Duration: 3s325ms Database: ctdprd51 User: pubeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1416807'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 15:14:47 Duration: 2s731ms Database: ctdprd51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 35m48s 35m48s 35m48s 1 35m48s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.object_type where cd = ?), ptr.term_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.phenotype_term_reference ptr, pub1.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Mar 27 19 1 35m48s 35m48s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub1.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 19:38:27 Duration: 35m48s Bind query: yes
2 35m41s 35m41s 35m41s 1 35m41s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.object_type where cd = ?), ( select current_date) from pub1.gene_chem_reference gcr, pub1.gene_go_annot gga, pub1.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Mar 27 20 1 35m41s 35m41s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub1.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub1.GENE_CHEM_REFERENCE gcr, pub1.GENE_GO_ANNOT gga, pub1.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub1.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 20:14:14 Duration: 35m41s Bind query: yes
3 33m58s 33m58s 33m58s 1 33m58s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Mar 27 18 1 33m58s 33m58s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-03-27 18:13:08 Duration: 33m58s Bind query: yes
4 24m20s 24m20s 24m20s 1 24m20s update pub1.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Mar 27 23 1 24m20s 24m20s -
update pub1.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub1.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-03-27 23:39:25 Duration: 24m20s Bind query: yes
5 21m15s 21m15s 21m15s 1 21m15s insert into pub1.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Mar 27 17 1 21m15s 21m15s -
insert into pub1.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-03-27 17:31:16 Duration: 21m15s Bind query: yes
6 14m55s 14m55s 14m55s 1 14m55s select maint_query_logs_archive ();Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Mar 27 00 1 14m55s 14m55s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-03-27 00:14:56 Duration: 14m55s
7 12m7s 12m7s 12m7s 1 12m7s alter table pub1.term_enrichment_agent add constraint term_enr_agent_term_enr_fk foreign key (term_id, enriched_term_id) references term_enrichment (term_id, enriched_term_id);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Mar 27 22 1 12m7s 12m7s -
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);
Date: 2024-03-27 22:50:19 Duration: 12m7s Bind query: yes
8 10m48s 10m48s 10m48s 1 10m48s insert into pub1.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.db_link;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Mar 27 17 1 10m48s 10m48s [ User: pub1 - Total duration: 10m48s - Times executed: 1 ]
-
insert into pub1.DB_LINK (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.DB_LINK;
Date: 2024-03-27 17:04:54 Duration: 10m48s Database: ctdprd51 User: pub1 Bind query: yes
9 9m25s 9m59s 9m33s 5 47m49s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by diseaseterm.nm_sort, phenotypeterm.nm_sort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Mar 27 17 5 47m49s 9m33s [ User: pubeu - Total duration: 9m27s - Times executed: 1 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:47:32 Duration: 9m59s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:57 Duration: 9m28s Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1235537') and diseaseTerm.object_type_id = 3 ORDER BY diseaseTerm.nm_sort, phenotypeTerm.nm_sort LIMIT 50;
Date: 2024-03-27 17:46:55 Duration: 9m27s Database: ctdprd51 User: pubeu Bind query: yes
10 3m32s 3m32s 3m32s 1 3m32s insert into pub1.gene_taxon (gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd) select gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd from load.gene_taxon;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Mar 27 17 1 3m32s 3m32s -
insert into pub1.GENE_TAXON (gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd) select gene_id, taxon_id, gene_acc_txt, gene_acc_db_cd from load.GENE_TAXON;
Date: 2024-03-27 17:34:49 Duration: 3m32s Bind query: yes
11 1s614ms 17m2s 3m26s 5 17m10s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Mar 27 11 1 17m2s 17m2s 16 1 1s973ms 1s973ms 17 1 1s687ms 1s687ms 19 1 1s614ms 1s614ms 21 1 3s193ms 3s193ms [ User: pubeu - Total duration: 17m3s - Times executed: 2 ]
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1227971') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 11:20:14 Duration: 17m2s Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1204159') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 21:26:52 Duration: 3s193ms Bind query: yes
-
SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1204158') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-03-27 16:43:09 Duration: 1s973ms Bind query: yes
12 2m59s 2m59s 2m59s 1 2m59s create unique index gene_disease_reference_ak1 on pub1.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Mar 27 20 1 2m59s 2m59s -
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:14 Duration: 2m59s Bind query: yes
-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub1.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-03-27 20:30:13 Duration: 0ms
13 2m59s 2m59s 2m59s 1 2m59s insert into pub1.term_label (id, object_type_id, term_id, term_label_type_id, nm) select l.id, t.object_type_id, l.term_id, l.term_label_type_id, l.nm from load.term t, load.term_label l where t.id = l.term_id and t.id in ( select id from pub1.term);Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Mar 27 17 1 2m59s 2m59s -
INSERT INTO pub1.TERM_LABEL (id, object_type_id, term_id, term_label_type_id, nm) select l.id, t.object_type_id, l.term_id, l.term_label_type_id, l.nm from load.TERM t, load.TERM_LABEL l where t.id = l.term_id and t.id in ( select id from pub1.TERM);
Date: 2024-03-27 17:10:01 Duration: 2m59s Bind query: yes
14 2m52s 2m52s 2m52s 1 2m52s alter table pub1.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Mar 27 22 1 2m52s 2m52s -
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:11 Duration: 2m52s Bind query: yes
-
ALTER TABLE pub1.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-03-27 22:53:10 Duration: 0ms
15 2m20s 2m20s 2m20s 1 2m20s create index ix_gene_disease_ref_net_sc on pub1.gene_disease_reference using btree (network_score);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Mar 27 20 1 2m20s 2m20s -
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:03 Duration: 2m20s Bind query: yes
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub1.gene_disease_reference USING btree (network_score);
Date: 2024-03-27 20:43:02 Duration: 0ms
16 2m7s 2m7s 2m7s 1 2m7s update pub1.phenotype_term pt set exposure_reference_qty = ( select count(distinct reference_id) from pub1.phenotype_term_reference ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and reference_id in ( select id from pub1.reference r where has_exposures = true));Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Mar 27 23 1 2m7s 2m7s -
update pub1.PHENOTYPE_TERM pt set exposure_reference_qty = ( select count(distinct reference_id) from pub1.PHENOTYPE_TERM_REFERENCE ptr where pt.phenotype_id = ptr.phenotype_id and pt.term_id = ptr.term_id and reference_id in ( select id from pub1.REFERENCE r where has_exposures = true));
Date: 2024-03-27 23:41:33 Duration: 2m7s Bind query: yes
17 2s138ms 9m27s 36s805ms 21 12m52s select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub1.gene_chem_reference gcr, pub1.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Mar 27 18 21 12m52s 36s805ms [ User: load - Total duration: 9m27s - Times executed: 1 ]
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:25:17 Duration: 9m27s Database: ctdprd51 User: load Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:46:08 Duration: 43s231ms Bind query: yes
-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub1.GENE_CHEM_REFERENCE gcr, pub1.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub1.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-03-27 18:41:00 Duration: 42s444ms Bind query: yes
18 1s11ms 6m24s 33s938ms 76 42m59s select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Mar 27 15 31 12m28s 24s129ms 16 12 7m21s 36s785ms 18 6 1m6s 11s71ms 20 5 14m6s 2m49s 21 1 26s628ms 26s628ms 22 18 7m7s 23s743ms 23 3 22s842ms 7s614ms [ User: load - Total duration: 13m29s - Times executed: 27 ]
[ Application: pg_bulkload - Total duration: 13m29s - Times executed: 27 ]
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-03-27 20:24:57 Duration: 6m24s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub1.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-03-27 20:52:22 Duration: 5m21s Bind query: yes
-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=edit.DB_LINK,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.log,parse-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/voc/gene/output/dbLink.txt.DUPE}');
Date: 2024-03-27 15:49:25 Duration: 3m24s Bind query: yes
19 6s878ms 6s935ms 6s909ms 5 34s548ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select term_id from term_label tl where upper(tl.nm) = ? and tl.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Mar 27 08 4 27s618ms 6s904ms 09 1 6s929ms 6s929ms [ User: pubeu - Total duration: 13s832ms - Times executed: 2 ]
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = '4,4''-HEXAFLUORISOPROPYLIDENE DIPHENOL' AND tl.object_type_id = 2))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 08:50:22 Duration: 6s935ms Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = 'DIMETHYLPHOSPHATE' AND tl.object_type_id = 2))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 09:18:16 Duration: 6s929ms Database: ctdprd51 User: pubeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and baseTerm.id in ( select term_id from term_label tl WHERE UPPER(tl.nm) = '4,4''-HEXAFLUORISOPROPYLIDENE DIPHENOL' AND tl.object_type_id = 2))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases', 'decreases', 'affects')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-03-27 08:46:54 Duration: 6s902ms Database: ctdprd51 User: pubeu Bind query: yes
20 2s716ms 12s434ms 6s605ms 5 33s29ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Mar 27 08 2 24s796ms 12s398ms 10 2 5s516ms 2s758ms 11 1 2s716ms 2s716ms [ User: pubeu - Total duration: 12s362ms - Times executed: 1 ]
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 08:31:02 Duration: 12s434ms Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2052710') ORDER BY gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 08:30:58 Duration: 12s362ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2057461') ORDER BY gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-03-27 10:49:29 Duration: 2s781ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1s633ms 1 1s633ms 1s633ms 1s633ms select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.IXN_AXN i where ptr.ixn_id = i.ixn_id;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Mar 27 23 1 1s633ms 1s633ms -
select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub1.PHENOTYPE_TERM_REFERENCE ptr, pub1.IXN_AXN i where ptr.ixn_id = i.ixn_id;
Date: 2024-03-27 23:08:16 Duration: 1s633ms Database: postgres
2 0ms 14 0ms 0ms 0ms ;Times Reported Time consuming bind #2
Day Hour Count Duration Avg duration Mar 26 08 5 0ms 0ms 09 3 0ms 0ms 11 1 0ms 0ms Mar 27 06 2 0ms 0ms 11 1 0ms 0ms 16 2 0ms 0ms [ User: pubeu - Total duration: 4m15s - Times executed: 8 ]
-
;
Date: Duration: 0ms Database: postgres User: ctdprd51 Remote: pubeu parameters: $1 = '1328314'
-
Events
Log levels
Key values
- 58,970 Log entries
Events distribution
Key values
- 0 PANIC entries
- 5 FATAL entries
- 14 ERROR entries
- 0 WARNING entries
Most Frequent Errors/Events
Key values
- 5 Max number of times the same event was reported
- 19 Total events found
Rank Times reported Error 1 5 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #1
Day Hour Count Mar 27 11 1 20 4 2 5 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #2
Day Hour Count Mar 27 11 1 20 4 3 4 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #3
Day Hour Count Mar 27 20 4 - ERROR: canceling statement due to user request
Statement: SELECT pg_database_size(datname::text) FROM pg_catalog.pg_database WHERE datistemplate = false AND datname = $1;
Date: 2024-03-27 20:29:08
4 3 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #4
Day Hour Count Mar 27 19 2 20 1 5 1 ERROR: function get_ixn_prose(...) does not exist
Times Reported Most Frequent Error / Event #5
Day Hour Count Mar 27 16 1 - ERROR: function get_ixn_prose(integer) does not exist at character 51
Hint: No function matches the given name and argument types. You might need to add explicit type casts.
Statement: select reference_acc_txt ,taxon_acc_txt ,get_ixn_prose( ixn_id ) ,create_by ,create_tm from edit.reference_ixn where taxon_acc_txt not in ( select acc_txt from load.term where object_type_id = ( select id from edit.object_type where cd = 'taxon' ) ) and taxon_acc_txt is not null and taxon_acc_txt <> ''Date: 2024-03-27 16:01:56 Database: ctdprd51 Application: pgAdmin 4 - CONN:7340018 User: load Remote:
6 1 ERROR: zero-length delimited identifier at or near """"
Times Reported Most Frequent Error / Event #6
Day Hour Count Mar 27 12 1 - ERROR: zero-length delimited identifier at or near """" at character 47
Statement: -- This is the AGGREGATE Report: select nm as ""Underlying Term Name"" ,acc_txt as ""Underlying Term Accession"" ,synonym ,reference_acc_txt ,notes ,create_by ,create_tm from edit.term_label where acc_txt not in ( select acc_txt from pub2.term ) order by acc_txt
Date: 2024-03-27 12:32:46 Database: ctdprd51 Application: pgAdmin 4 - CONN:1446741 User: edit Remote: