pgBadger-
Global information
- Generated on Thu Jun 27 04:15:05 2024
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20240626
- Parsed 27,918 log entries in 4s
- Log start from 2024-06-26 00:00:01 to 2024-06-26 23:59:39
-
Overview
Global Stats
- 268 Number of unique normalized queries
- 1,683 Number of queries
- 8h4m33s Total query duration
- 2024-06-26 00:00:37 First query
- 2024-06-26 23:59:20 Last query
- 8 queries/s at 2024-06-26 09:43:55 Query peak
- 8h4m33s Total query duration
- 0ms Prepare/parse total duration
- 3s973ms Bind total duration
- 8h4m29s Execute total duration
- 14 Number of events
- 6 Number of unique normalized events
- 4 Max number of times the same event was reported
- 0 Number of cancellation
- 54 Total number of automatic vacuums
- 80 Total number of automatic analyzes
- 857 Number temporary file
- 1.00 GiB Max size of temporary file
- 351.27 MiB Average size of temporary file
- 2,386 Total number of sessions
- 108 sessions at 2024-06-26 00:13:46 Session peak
- 41d4h59m59s Total duration of sessions
- 24m52s Average duration of sessions
- 0 Average queries per session
- 12s185ms Average queries duration per session
- 24m40s Average idle time per session
- 2,389 Total number of connections
- 10 connections/s at 2024-06-26 11:00:42 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 8 queries/s Query Peak
- 2024-06-26 09:43:55 Date
SELECT Traffic
Key values
- 8 queries/s Query Peak
- 2024-06-26 09:43:55 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2024-06-26 20:19:54 Date
Queries duration
Key values
- 8h4m33s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 26 00 25 0ms 16m16s 1m26s 4m32s 4m40s 16m21s 01 26 0ms 4s150ms 1s884ms 3s971ms 4s150ms 7s687ms 02 24 0ms 5s546ms 1s769ms 2s550ms 5s317ms 10s489ms 03 24 0ms 5s332ms 2s106ms 4s908ms 5s209ms 6s838ms 04 26 0ms 19s488ms 3s523ms 2s596ms 18s814ms 19s488ms 05 60 0ms 4s958ms 2s104ms 12s441ms 24s727ms 29s994ms 06 31 0ms 3m37s 11s444ms 6s556ms 40s708ms 3m38s 07 15 0ms 3s898ms 1s595ms 2s386ms 3s877ms 3s898ms 08 33 0ms 7s668ms 2s172ms 5s445ms 6s207ms 8s876ms 09 560 0ms 17m44s 7s410ms 4m22s 8m48s 17m45s 10 43 0ms 17m28s 27s965ms 4s631ms 9s461ms 18m22s 11 37 0ms 39s688ms 3s72ms 4s944ms 6s83ms 40s876ms 12 29 0ms 37s249ms 2s935ms 2s723ms 3s833ms 42s793ms 13 16 0ms 10m10s 40s693ms 5s144ms 5s246ms 10m10s 14 51 0ms 2m25s 6s738ms 19s759ms 40s868ms 2m25s 15 21 0ms 4s814ms 1s737ms 2s331ms 3s891ms 5s191ms 16 30 0ms 11m25s 39s161ms 7s342ms 1m55s 11m35s 17 43 0ms 34m16s 1m33s 1m7s 3m51s 34m26s 18 54 0ms 10m22s 20s119ms 50s352ms 52s52ms 10m23s 19 19 0ms 37m12s 1m59s 3s744ms 3s919ms 37m12s 20 74 0ms 39m27s 1m2s 1m53s 5m12s 39m27s 21 297 0ms 17m21s 8s806ms 1m46s 4m26s 17m21s 22 72 0ms 12m23s 20s67ms 41s750ms 2m58s 12m23s 23 73 0ms 23m36s 31s382ms 1m22s 1m55s 23m36s Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 26 00 24 0 1m29s 2s389ms 4m32s 16m16s 01 26 0 1s884ms 2s473ms 3s971ms 7s687ms 02 24 0 1s769ms 1s413ms 2s550ms 10s489ms 03 24 0 2s106ms 1s569ms 4s908ms 6s838ms 04 26 0 3s523ms 2s392ms 2s596ms 19s488ms 05 56 0 2s100ms 2s542ms 12s441ms 29s994ms 06 21 10 11s444ms 2s539ms 6s556ms 3m38s 07 15 0 1s595ms 1s310ms 2s386ms 3s898ms 08 33 0 2s172ms 2s798ms 5s445ms 8s876ms 09 559 0 7s417ms 50s307ms 4m22s 12m12s 10 33 10 27s965ms 2s546ms 5s547ms 17m28s 11 37 0 3s72ms 3s707ms 4s944ms 8s189ms 12 29 0 2s935ms 1s412ms 2s723ms 42s793ms 13 16 0 40s693ms 1s367ms 5s144ms 10m10s 14 41 10 6s738ms 2s707ms 19s759ms 2m25s 15 21 0 1s737ms 1s308ms 2s331ms 5s191ms 16 22 0 1s699ms 1s203ms 1s573ms 6s189ms 17 35 0 1m2s 1s349ms 2s454ms 1m7s 18 44 10 20s119ms 11s470ms 50s352ms 10m23s 19 19 0 1m59s 1s439ms 3s744ms 37m12s 20 41 0 1m23s 4s973ms 56s824ms 6m40s 21 296 0 8s821ms 38s923ms 1m46s 17m21s 22 58 0 6s448ms 3s75ms 9s175ms 1m20s 23 42 0 4s635ms 2s412ms 4s934ms 22s109ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 26 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 4 0 0 0 4m11s 0ms 0ms 1m55s 17 8 0 0 0 3m52s 0ms 0ms 1m53s 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 16 9 0 0 1m22s 0ms 0ms 1m55s Day Hour Prepare Bind Bind/Prepare Percentage of prepare Jun 26 00 0 23 23.00 0.00% 01 0 26 26.00 0.00% 02 0 24 24.00 0.00% 03 0 24 24.00 0.00% 04 0 26 26.00 0.00% 05 0 60 60.00 0.00% 06 0 21 21.00 0.00% 07 0 15 15.00 0.00% 08 0 34 34.00 0.00% 09 0 562 562.00 0.00% 10 0 32 32.00 0.00% 11 0 36 36.00 0.00% 12 0 29 29.00 0.00% 13 0 16 16.00 0.00% 14 0 41 41.00 0.00% 15 0 21 21.00 0.00% 16 0 26 26.00 0.00% 17 0 43 43.00 0.00% 18 0 44 44.00 0.00% 19 0 19 19.00 0.00% 20 0 74 74.00 0.00% 21 0 297 297.00 0.00% 22 0 72 72.00 0.00% 23 0 73 73.00 0.00% Day Hour Count Average / Second Jun 26 00 87 0.02/s 01 74 0.02/s 02 80 0.02/s 03 76 0.02/s 04 88 0.02/s 05 93 0.03/s 06 92 0.03/s 07 77 0.02/s 08 86 0.02/s 09 267 0.07/s 10 106 0.03/s 11 96 0.03/s 12 83 0.02/s 13 91 0.03/s 14 85 0.02/s 15 84 0.02/s 16 87 0.02/s 17 91 0.03/s 18 84 0.02/s 19 78 0.02/s 20 93 0.03/s 21 174 0.05/s 22 103 0.03/s 23 114 0.03/s Day Hour Count Average Duration Average idle time Jun 26 00 87 28m38s 28m13s 01 74 28m56s 28m55s 02 80 30m12s 30m11s 03 76 30m49s 30m49s 04 88 28m20s 28m19s 05 93 26m45s 26m44s 06 92 26m26s 26m22s 07 77 30m56s 30m56s 08 84 30m 29m59s 09 266 9m34s 9m18s 10 106 23m52s 23m41s 11 96 24m14s 24m13s 12 84 30m51s 30m50s 13 91 28m44s 28m36s 14 86 28m43s 28m39s 15 84 29m9s 29m9s 16 84 29m28s 29m14s 17 91 25m47s 25m3s 18 84 28m14s 28m2s 19 78 30m5s 29m36s 20 94 34m9s 33m20s 21 174 13m34s 13m19s 22 103 24m2s 23m48s 23 114 21m59s 21m38s -
Connections
Established Connections
Key values
- 10 connections Connection Peak
- 2024-06-26 11:00:42 Date
Connections per database
Key values
- ctdprd51 Main Database
- 2,389 connections Total
Connections per user
Key values
- pubeu Main User
- 2,389 connections Total
-
Sessions
Simultaneous sessions
Key values
- 108 sessions Session Peak
- 2024-06-26 00:13:46 Date
Histogram of session times
Key values
- 1,742 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 2,386 sessions Total
Sessions per user
Key values
- pubeu Main User
- 2,386 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 2,386 sessions Total
Host Count Total Duration Average Duration 10.12.5.37 793 8d3h26m 14m47s 10.12.5.38 374 7d23h13m48s 30m40s 10.12.5.39 375 8d11m51s 30m45s 10.12.5.40 69 7h5m21s 6m9s 10.12.5.45 381 7d23h59m2s 30m14s 10.12.5.46 375 7d23h40m20s 30m40s 192.168.201.10 8 2h20m17s 17m32s 192.168.201.14 1 11h52m24s 11h52m24s 192.168.201.6 2 5h3m16s 2h31m38s ::1 8 7m37s 57s174ms -
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 4,972,428 buffers Checkpoint Peak
- 2024-06-26 23:08:24 Date
- 1619.961 seconds Highest write time
- 0.791 seconds Sync time
Checkpoints Wal files
Key values
- 689 files Wal files usage Peak
- 2024-06-26 20:19:59 Date
Checkpoints distance
Key values
- 18,517.39 Mo Distance Peak
- 2024-06-26 22:47:27 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Jun 26 00 1,829 183.461s 0.004s 183.59s 01 1,620 162.494s 0.003s 162.527s 02 280 28.267s 0.002s 28.299s 03 284 28.554s 0.002s 28.587s 04 254 25.637s 0.002s 25.709s 05 484 48.68s 0.002s 48.71s 06 629 63.205s 0.003s 63.235s 07 1,357 136.147s 0.003s 136.177s 08 326 32.876s 0.003s 32.909s 09 122 12.318s 0.001s 12.334s 10 56,899 1,663.123s 0.005s 1,663.311s 11 265 26.644s 0.002s 26.659s 12 33,187 1,651.874s 0.004s 1,651.922s 13 4,930 493.79s 0.004s 493.866s 14 247 24.957s 0.002s 24.988s 15 411 41.272s 0.002s 41.303s 16 1,305,970 1,011.411s 0.335s 1,032.34s 17 1,371,032 2,893.549s 0.14s 2,907.263s 18 672,159 1,619.316s 0.014s 1,623.338s 19 191 19.348s 0.002s 19.378s 20 3,139,384 402.187s 1.552s 440.328s 21 673,964 2,114.32s 0.015s 2,120.763s 22 3,875,068 2,850.035s 0.807s 2,871.947s 23 6,653,725 1,739.796s 0.581s 1,768.794s Day Hour Added Removed Recycled Synced files Longest sync Average sync Jun 26 00 0 1 0 74 0.001s 0.002s 01 0 0 0 50 0.001s 0.002s 02 0 0 0 28 0.001s 0.002s 03 0 0 0 36 0.001s 0.002s 04 0 1 0 28 0.001s 0.002s 05 0 0 0 43 0.001s 0.002s 06 0 0 0 43 0.001s 0.002s 07 0 0 0 34 0.001s 0.002s 08 0 0 0 73 0.001s 0.002s 09 0 0 0 11 0.001s 0.001s 10 0 33 0 80 0.001s 0.003s 11 0 0 0 30 0.001s 0.001s 12 0 0 0 71 0.001s 0.003s 13 0 3 0 43 0.001s 0.002s 14 0 0 0 25 0.001s 0.002s 15 0 0 0 41 0.001s 0.002s 16 0 31 1,615 301 0.112s 0.006s 17 0 0 1,076 174 0.044s 0.004s 18 0 0 322 238 0.001s 0.001s 19 0 0 0 25 0.001s 0.002s 20 0 32 2,676 180 0.788s 0.064s 21 0 0 511 134 0.001s 0.002s 22 0 0 1,516 182 0.780s 0.02s 23 0 451 2,152 528 0.446s 0.01s Day Hour Count Avg time (sec) Jun 26 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Jun 26 00 6,666.00 kB 2,370,337.00 kB 01 4,575.00 kB 1,920,698.00 kB 02 284.50 kB 1,556,191.50 kB 03 428.00 kB 1,260,598.50 kB 04 310.00 kB 1,021,158.00 kB 05 637.00 kB 827,232.00 kB 06 560.50 kB 670,187.00 kB 07 669.00 kB 542,979.00 kB 08 574.50 kB 439,887.50 kB 09 301.00 kB 375,139.00 kB 10 181,837.67 kB 491,174.33 kB 11 1,396.00 kB 396,598.00 kB 12 590.00 kB 322,545.33 kB 13 23,307.00 kB 251,724.50 kB 14 378.00 kB 203,990.50 kB 15 998.00 kB 165,366.50 kB 16 6,609,557.00 kB 6,644,739.75 kB 17 8,813,693.00 kB 8,818,504.00 kB 18 5,802,647.00 kB 8,516,756.00 kB 19 448.50 kB 7,281,896.50 kB 20 7,381,499.50 kB 8,506,481.17 kB 21 4,189,551.00 kB 8,468,442.50 kB 22 7,943,954.00 kB 8,879,879.00 kB 23 8,812,094.75 kB 9,329,348.00 kB -
Temporary Files
Size of temporary files
Key values
- 15.00 GiB Temp Files size Peak
- 2024-06-26 20:00:18 Date
Number of temporary files
Key values
- 15 per second Temp Files Peak
- 2024-06-26 20:13:39 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Jun 26 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 115 5.14 GiB 45.81 MiB 17 0 0 0 18 24 23.69 GiB 1010.58 MiB 19 46 45.32 GiB 1008.95 MiB 20 331 172.93 GiB 535.00 MiB 21 175 16.01 GiB 93.68 MiB 22 75 27.98 GiB 381.97 MiB 23 91 2.91 GiB 32.73 MiB Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 185 23.88 GiB 8.00 KiB 1.00 GiB 132.17 MiB select * from pgbulkload.pg_bulkload (?);-
SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-06-26 20:11:16 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-06-26 20:38:46 Duration: 5m12s
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-06-26 22:27:50 Duration: 2m54s Database: ctdprd51 User: load Application: pg_bulkload
2 65 64.65 GiB 665.14 MiB 1.00 GiB 1018.48 MiB select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.gene_go_annot gga, pub2.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;-
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in;
Date: 2024-06-26 20:00:15 Duration: 0ms
3 46 45.32 GiB 331.61 MiB 1.00 GiB 1008.95 MiB select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.object_type where cd = ?), ptr.term_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.phenotype_term_reference ptr, pub2.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;-
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in;
Date: 2024-06-26 19:20:42 Duration: 0ms
4 35 1.10 GiB 22.59 MiB 45.72 MiB 32.22 MiB vacuum full analyze ixn_actor;-
vacuum FULL analyze ixn_actor;
Date: 2024-06-26 16:10:34 Duration: 23s658ms
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vacuum FULL analyze ixn_actor;
Date: 2024-06-26 16:10:17 Duration: 0ms Database: ctdprd51 User: edit Application: pgAdmin 4 - CONN:749457
5 35 3.48 GiB 58.38 MiB 135.93 MiB 101.81 MiB vacuum full analyze db_link;-
vacuum FULL analyze db_link;
Date: 2024-06-26 16:12:54 Duration: 1m31s
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vacuum FULL analyze db_link;
Date: 2024-06-26 16:11:39 Duration: 0ms
6 25 15.71 GiB 8.00 KiB 1.00 GiB 643.68 MiB alter table pub2.term_enrichment_agent add constraint term_enrichment_agent_pk primary key (term_id, enriched_term_id, agent_term_id);-
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-06-26 22:47:45 Duration: 2m54s
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ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enrichment_agent_pk PRIMARY KEY (term_id, enriched_term_id, agent_term_id);
Date: 2024-06-26 22:47:44 Duration: 0ms
7 25 361.98 MiB 10.66 MiB 19.71 MiB 14.48 MiB vacuum full analyze ixn;-
vacuum FULL analyze ixn;
Date: 2024-06-26 16:11:14 Duration: 7s342ms
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vacuum FULL analyze ixn;
Date: 2024-06-26 16:11:09 Duration: 0ms
8 24 23.69 GiB 701.93 MiB 1.00 GiB 1010.58 MiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;-
select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;
Date: 2024-06-26 18:39:38 Duration: 0ms
9 20 12.29 GiB 8.00 KiB 1.00 GiB 629.41 MiB create unique index gene_disease_reference_ak1 on pub2.gene_disease_reference using btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);-
CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-06-26 20:16:42 Duration: 3m2s
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CREATE UNIQUE INDEX gene_disease_reference_ak1 ON pub2.gene_disease_reference USING btree (gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id);
Date: 2024-06-26 20:16:41 Duration: 0ms
10 20 215.01 MiB 6.19 MiB 16.63 MiB 10.75 MiB vacuum full analyze term;-
vacuum FULL analyze TERM;
Date: 2024-06-26 16:10:36 Duration: 10s805ms
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vacuum FULL analyze TERM;
Date: 2024-06-26 16:10:27 Duration: 0ms Database: ctdprd51 User: load Application: pgAdmin 4 - CONN:3182627
11 15 6.83 GiB 8.00 KiB 1.00 GiB 466.23 MiB alter table pub2.gene_disease_reference add constraint gene_disease_reference_pk primary key (id);-
ALTER TABLE pub2.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-06-26 20:13:39 Duration: 1m12s
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ALTER TABLE pub2.gene_disease_reference ADD CONSTRAINT gene_disease_reference_pk PRIMARY KEY (id);
Date: 2024-06-26 20:13:39 Duration: 0ms Database: ctdprd51 User: pub2
12 15 11.22 GiB 225.07 MiB 1.00 GiB 766.28 MiB create index ix_term_enrich_agent_enr_term on pub2.term_enrichment_agent using btree (enriched_term_id);-
CREATE INDEX ix_term_enrich_agent_enr_term ON pub2.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-06-26 22:44:51 Duration: 1m44s
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CREATE INDEX ix_term_enrich_agent_enr_term ON pub2.term_enrichment_agent USING btree (enriched_term_id);
Date: 2024-06-26 22:44:50 Duration: 0ms
13 10 1005.77 MiB 8.00 KiB 209.88 MiB 100.58 MiB alter table pub2.phenotype_term_reference add constraint phenotype_term_reference_pk primary key (id);-
ALTER TABLE pub2.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-06-26 20:29:44 Duration: 11s434ms
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ALTER TABLE pub2.phenotype_term_reference ADD CONSTRAINT phenotype_term_reference_pk PRIMARY KEY (id);
Date: 2024-06-26 20:29:43 Duration: 0ms
14 10 62.61 MiB 8.00 KiB 12.95 MiB 6.26 MiB alter table pub2.phenotype_term add constraint phenotype_term_pk primary key (phenotype_id, term_id);-
ALTER TABLE pub2.phenotype_term ADD CONSTRAINT phenotype_term_pk PRIMARY KEY (phenotype_id, term_id);
Date: 2024-06-26 23:01:50 Duration: 0ms
15 10 6.83 GiB 319.92 MiB 1.00 GiB 699.35 MiB create index ix_gene_disease_ref_src_db on pub2.gene_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_gene_disease_ref_src_db ON pub2.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-06-26 20:17:30 Duration: 47s733ms
-
CREATE INDEX ix_gene_disease_ref_src_db ON pub2.gene_disease_reference USING btree (source_acc_db_id);
Date: 2024-06-26 20:17:30 Duration: 0ms
16 10 6.83 GiB 132.22 MiB 1.00 GiB 699.35 MiB create index ix_gene_disease_ref_source_cd on pub2.gene_disease_reference using btree (source_cd);-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub2.gene_disease_reference USING btree (source_cd);
Date: 2024-06-26 20:18:29 Duration: 59s168ms
-
CREATE INDEX ix_gene_disease_ref_source_cd ON pub2.gene_disease_reference USING btree (source_cd);
Date: 2024-06-26 20:18:29 Duration: 0ms
17 10 6.83 GiB 367.42 MiB 1.00 GiB 699.34 MiB create index ix_gene_disease_ref_net_sc on pub2.gene_disease_reference using btree (network_score);-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub2.gene_disease_reference USING btree (network_score);
Date: 2024-06-26 20:29:33 Duration: 2m21s
-
CREATE INDEX ix_gene_disease_ref_net_sc ON pub2.gene_disease_reference USING btree (network_score);
Date: 2024-06-26 20:29:33 Duration: 0ms
18 10 627.66 MiB 8.00 KiB 126.98 MiB 62.77 MiB alter table pub2.gene_disease add constraint gene_disease_pk primary key (gene_id, disease_id);-
ALTER TABLE pub2.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-06-26 23:01:27 Duration: 6s167ms
-
ALTER TABLE pub2.gene_disease ADD CONSTRAINT gene_disease_pk PRIMARY KEY (gene_id, disease_id);
Date: 2024-06-26 23:01:27 Duration: 0ms
19 10 6.83 GiB 367.32 MiB 1.00 GiB 699.34 MiB create index ix_gene_disease_ref_dis_gene on pub2.gene_disease_reference using btree (disease_id, gene_id);-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub2.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-06-26 20:24:29 Duration: 1m51s
-
CREATE INDEX ix_gene_disease_ref_dis_gene ON pub2.gene_disease_reference USING btree (disease_id, gene_id);
Date: 2024-06-26 20:24:28 Duration: 0ms
20 10 6.83 GiB 330.84 MiB 1.00 GiB 699.34 MiB create index ix_gene_disease_ref_reference on pub2.gene_disease_reference using btree (reference_id);-
CREATE INDEX ix_gene_disease_ref_reference ON pub2.gene_disease_reference USING btree (reference_id);
Date: 2024-06-26 20:22:37 Duration: 1m19s
-
CREATE INDEX ix_gene_disease_ref_reference ON pub2.gene_disease_reference USING btree (reference_id);
Date: 2024-06-26 20:22:37 Duration: 0ms
21 10 240.53 MiB 8.00 KiB 49.97 MiB 24.05 MiB alter table pub2.chem_disease_reference add constraint chem_disease_reference_pk primary key (id);-
ALTER TABLE pub2.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-06-26 20:31:32 Duration: 2s255ms
-
ALTER TABLE pub2.chem_disease_reference ADD CONSTRAINT chem_disease_reference_pk PRIMARY KEY (id);
Date: 2024-06-26 20:31:31 Duration: 0ms
22 10 156.34 MiB 8.00 KiB 32.97 MiB 15.63 MiB alter table pub2.term_enrichment add constraint term_enrichment_pk primary key (term_id, enriched_term_id);-
ALTER TABLE pub2.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-06-26 22:30:43 Duration: 1s977ms
-
ALTER TABLE pub2.term_enrichment ADD CONSTRAINT term_enrichment_pk PRIMARY KEY (term_id, enriched_term_id);
Date: 2024-06-26 22:30:43 Duration: 0ms
23 10 438.17 MiB 8.00 KiB 91.08 MiB 43.82 MiB create unique index chem_disease_reference_ak1 on pub2.chem_disease_reference using btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub2.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-06-26 20:31:37 Duration: 5s915ms
-
CREATE UNIQUE INDEX chem_disease_reference_ak1 ON pub2.chem_disease_reference USING btree (chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id);
Date: 2024-06-26 20:31:37 Duration: 0ms
24 10 6.83 GiB 313.88 MiB 1.00 GiB 699.35 MiB create index ix_gene_disease_reference_ixn on pub2.gene_disease_reference using btree (ixn_id);-
CREATE INDEX ix_gene_disease_reference_ixn ON pub2.gene_disease_reference USING btree (ixn_id);
Date: 2024-06-26 20:25:50 Duration: 1m21s
-
CREATE INDEX ix_gene_disease_reference_ixn ON pub2.gene_disease_reference USING btree (ixn_id);
Date: 2024-06-26 20:25:49 Duration: 0ms
25 10 6.83 GiB 293.16 MiB 1.00 GiB 699.35 MiB create index ix_gene_disease_ref_chem on pub2.gene_disease_reference using btree (via_chem_id);-
CREATE INDEX ix_gene_disease_ref_chem ON pub2.gene_disease_reference USING btree (via_chem_id);
Date: 2024-06-26 20:19:54 Duration: 1m25s
-
CREATE INDEX ix_gene_disease_ref_chem ON pub2.gene_disease_reference USING btree (via_chem_id);
Date: 2024-06-26 20:19:54 Duration: 0ms
26 10 6.83 GiB 344.55 MiB 1.00 GiB 699.35 MiB create index ix_gene_disease_ref_disease on pub2.gene_disease_reference using btree (disease_id);-
CREATE INDEX ix_gene_disease_ref_disease ON pub2.gene_disease_reference USING btree (disease_id);
Date: 2024-06-26 20:21:18 Duration: 1m23s
-
CREATE INDEX ix_gene_disease_ref_disease ON pub2.gene_disease_reference USING btree (disease_id);
Date: 2024-06-26 20:21:17 Duration: 0ms
27 10 6.83 GiB 304.02 MiB 1.00 GiB 699.34 MiB create index ix_gene_disease_ref_mod_tm on pub2.gene_disease_reference using btree (mod_tm);-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub2.gene_disease_reference USING btree (mod_tm);
Date: 2024-06-26 20:27:12 Duration: 1m22s
-
CREATE INDEX ix_gene_disease_ref_mod_tm ON pub2.gene_disease_reference USING btree (mod_tm);
Date: 2024-06-26 20:27:12 Duration: 0ms
28 8 63.37 MiB 8.00 KiB 16.24 MiB 7.92 MiB alter table pub2.chem_disease add constraint chem_disease_pk primary key (chem_id, disease_id);-
ALTER TABLE pub2.chem_disease ADD CONSTRAINT chem_disease_pk PRIMARY KEY (chem_id, disease_id);
Date: 2024-06-26 23:01:54 Duration: 0ms
29 6 5.10 GiB 105.82 MiB 1.00 GiB 870.97 MiB select distinct ptr.phenotype_id, cdr.disease_id, ( select id from pub2.object_type where cd = ?), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub2.object_type where cd = ?), cdr.mod_tm from pub2.chem_disease_reference cdr, pub2.phenotype_term_reference ptr where cdr.chem_id = ptr.term_id;-
SELECT DISTINCT ptr.phenotype_id, cdr.disease_id, ( select id from pub2.OBJECT_TYPE where cd = 'disease'), cdr.reference_id, ptr.reference_id, cdr.ixn_id, cdr.chem_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), cdr.mod_tm FROM pub2.CHEM_DISEASE_REFERENCE cdr, pub2.PHENOTYPE_TERM_REFERENCE ptr WHERE cdr.chem_id = ptr.term_id;
Date: 2024-06-26 20:04:03 Duration: 0ms
30 5 240.49 MiB 47.08 MiB 49.23 MiB 48.10 MiB create index ix_chem_disease_reference_ref on pub2.chem_disease_reference using btree (reference_id);-
CREATE INDEX ix_chem_disease_reference_ref ON pub2.chem_disease_reference USING btree (reference_id);
Date: 2024-06-26 20:31:43 Duration: 2s753ms
-
CREATE INDEX ix_chem_disease_reference_ref ON pub2.chem_disease_reference USING btree (reference_id);
Date: 2024-06-26 20:31:43 Duration: 0ms
31 5 156.30 MiB 27.14 MiB 34.73 MiB 31.26 MiB create index ix_term_enrich_tgt_match on pub2.term_enrichment using btree (target_match_qty);-
CREATE INDEX ix_term_enrich_tgt_match ON pub2.term_enrichment USING btree (target_match_qty);
Date: 2024-06-26 22:30:30 Duration: 1s958ms
-
CREATE INDEX ix_term_enrich_tgt_match ON pub2.term_enrichment USING btree (target_match_qty);
Date: 2024-06-26 22:30:30 Duration: 0ms
32 5 240.49 MiB 45.62 MiB 49.58 MiB 48.10 MiB create index ix_chem_disease_ref_net_sc on pub2.chem_disease_reference using btree (network_score);-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub2.chem_disease_reference USING btree (network_score);
Date: 2024-06-26 20:32:00 Duration: 4s889ms
-
CREATE INDEX ix_chem_disease_ref_net_sc ON pub2.chem_disease_reference USING btree (network_score);
Date: 2024-06-26 20:32:00 Duration: 0ms
33 5 240.49 MiB 45.41 MiB 50.25 MiB 48.10 MiB create index ix_chem_disease_ref_mod_tm on pub2.chem_disease_reference using btree (mod_tm);-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub2.chem_disease_reference USING btree (mod_tm);
Date: 2024-06-26 20:31:55 Duration: 2s796ms
-
CREATE INDEX ix_chem_disease_ref_mod_tm ON pub2.chem_disease_reference USING btree (mod_tm);
Date: 2024-06-26 20:31:55 Duration: 0ms
34 5 1005.75 MiB 194.11 MiB 211.54 MiB 201.15 MiB create index ix_phenotype_term_ref_term_id on pub2.phenotype_term_reference using btree (term_id);-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub2.phenotype_term_reference USING btree (term_id);
Date: 2024-06-26 20:30:03 Duration: 9s516ms
-
CREATE INDEX ix_phenotype_term_ref_term_id ON pub2.phenotype_term_reference USING btree (term_id);
Date: 2024-06-26 20:30:03 Duration: 0ms
35 5 240.49 MiB 45.03 MiB 50.98 MiB 48.10 MiB create index ix_chem_disease_reference_dis on pub2.chem_disease_reference using btree (disease_id);-
CREATE INDEX ix_chem_disease_reference_dis ON pub2.chem_disease_reference USING btree (disease_id);
Date: 2024-06-26 20:31:40 Duration: 2s778ms
-
CREATE INDEX ix_chem_disease_reference_dis ON pub2.chem_disease_reference USING btree (disease_id);
Date: 2024-06-26 20:31:40 Duration: 0ms
36 5 240.49 MiB 45.87 MiB 49.31 MiB 48.10 MiB create index ix_chem_disease_reference_ixn on pub2.chem_disease_reference using btree (ixn_id);-
CREATE INDEX ix_chem_disease_reference_ixn ON pub2.chem_disease_reference USING btree (ixn_id);
Date: 2024-06-26 20:31:52 Duration: 2s862ms
-
CREATE INDEX ix_chem_disease_reference_ixn ON pub2.chem_disease_reference USING btree (ixn_id);
Date: 2024-06-26 20:31:52 Duration: 0ms
37 5 1005.75 MiB 194.65 MiB 218.25 MiB 201.15 MiB create index ix_phenotype_term_ref_object_type_id on pub2.phenotype_term_reference using btree (term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub2.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-06-26 20:30:11 Duration: 8s344ms
-
CREATE INDEX ix_phenotype_term_ref_object_type_id ON pub2.phenotype_term_reference USING btree (term_object_type_id);
Date: 2024-06-26 20:30:11 Duration: 0ms
38 5 156.30 MiB 29.64 MiB 32.03 MiB 31.26 MiB create index ix_term_enrich_enr_obj_type on pub2.term_enrichment using btree (enriched_object_type_id);-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub2.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-06-26 22:30:32 Duration: 1s150ms
-
CREATE INDEX ix_term_enrich_enr_obj_type ON pub2.term_enrichment USING btree (enriched_object_type_id);
Date: 2024-06-26 22:30:32 Duration: 0ms
39 5 1.38 GiB 265.90 MiB 292.72 MiB 282.28 MiB create index ix_phenotype_term_ref_ids on pub2.phenotype_term_reference using btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);-
CREATE INDEX ix_phenotype_term_ref_ids ON pub2.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-06-26 20:31:29 Duration: 14s20ms
-
CREATE INDEX ix_phenotype_term_ref_ids ON pub2.phenotype_term_reference USING btree (phenotype_id, term_id, via_term_object_type_id, term_object_type_id);
Date: 2024-06-26 20:31:29 Duration: 0ms
40 5 218.24 MiB 39.75 MiB 45.38 MiB 43.65 MiB create index ix_term_enrich_corr_p_val on pub2.term_enrichment using btree (corrected_p_val);-
CREATE INDEX ix_term_enrich_corr_p_val ON pub2.term_enrichment USING btree (corrected_p_val);
Date: 2024-06-26 22:30:36 Duration: 4s566ms
-
CREATE INDEX ix_term_enrich_corr_p_val ON pub2.term_enrichment USING btree (corrected_p_val);
Date: 2024-06-26 22:30:36 Duration: 0ms
41 5 1005.74 MiB 190.27 MiB 209.54 MiB 201.15 MiB create index ixn_phenotype_term_ref_phenotype_id on pub2.phenotype_term_reference using btree (phenotype_id);-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub2.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-06-26 20:29:53 Duration: 8s700ms
-
CREATE INDEX ixn_phenotype_term_ref_phenotype_id ON pub2.phenotype_term_reference USING btree (phenotype_id);
Date: 2024-06-26 20:29:53 Duration: 0ms
42 5 680.00 KiB 128.00 KiB 144.00 KiB 136.00 KiB create index ix_gene_disease_cur_ref_qty on pub2.gene_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_gene_disease_cur_ref_qty ON pub2.gene_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-06-26 23:01:13 Duration: 0ms Database: ctdprd51 User: pub2
43 5 1005.75 MiB 189.98 MiB 208.94 MiB 201.15 MiB create index ix_phenotype_term_ref_via_term_id on pub2.phenotype_term_reference using btree (via_term_id);-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub2.phenotype_term_reference USING btree (via_term_id);
Date: 2024-06-26 20:31:15 Duration: 10s557ms
-
CREATE INDEX ix_phenotype_term_ref_via_term_id ON pub2.phenotype_term_reference USING btree (via_term_id);
Date: 2024-06-26 20:31:15 Duration: 0ms
44 5 1005.75 MiB 193.28 MiB 204.89 MiB 201.15 MiB create index ix_phenotype_term_ref_taxon_id on pub2.phenotype_term_reference using btree (taxon_id);-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub2.phenotype_term_reference USING btree (taxon_id);
Date: 2024-06-26 20:30:29 Duration: 7s98ms
-
CREATE INDEX ix_phenotype_term_ref_taxon_id ON pub2.phenotype_term_reference USING btree (taxon_id);
Date: 2024-06-26 20:30:29 Duration: 0ms
45 5 218.23 MiB 42.92 MiB 44.62 MiB 43.65 MiB create index ix_term_enrich_raw_p_val on pub2.term_enrichment using btree (raw_p_val);-
CREATE INDEX ix_term_enrich_raw_p_val ON pub2.term_enrichment USING btree (raw_p_val);
Date: 2024-06-26 22:30:41 Duration: 4s766ms
-
CREATE INDEX ix_term_enrich_raw_p_val ON pub2.term_enrichment USING btree (raw_p_val);
Date: 2024-06-26 22:30:41 Duration: 0ms
46 5 240.48 MiB 47.47 MiB 48.68 MiB 48.10 MiB create index ix_chem_disease_reference_gene on pub2.chem_disease_reference using btree (via_gene_id);-
CREATE INDEX ix_chem_disease_reference_gene ON pub2.chem_disease_reference USING btree (via_gene_id);
Date: 2024-06-26 20:31:49 Duration: 2s710ms
-
CREATE INDEX ix_chem_disease_reference_gene ON pub2.chem_disease_reference USING btree (via_gene_id);
Date: 2024-06-26 20:31:49 Duration: 0ms
47 5 62.57 MiB 11.10 MiB 13.95 MiB 12.51 MiB create index ix_phenotype_term_term_id on pub2.phenotype_term using btree (term_id);-
CREATE INDEX ix_phenotype_term_term_id ON pub2.phenotype_term USING btree (term_id);
Date: 2024-06-26 23:01:51 Duration: 0ms
48 5 40.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_gene_disease_exp_ref_qty on pub2.gene_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_gene_disease_exp_ref_qty ON pub2.gene_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-06-26 23:01:21 Duration: 0ms
49 5 627.48 MiB 124.82 MiB 126.06 MiB 125.50 MiB create index ix_gene_disease_ind_chem_qty on pub2.gene_disease using btree (indirect_chem_qty) where (indirect_chem_qty > ?);-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub2.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-06-26 23:01:21 Duration: 7s195ms
-
CREATE INDEX ix_gene_disease_ind_chem_qty ON pub2.gene_disease USING btree (indirect_chem_qty) WHERE (indirect_chem_qty > 0);
Date: 2024-06-26 23:01:21 Duration: 0ms
50 5 240.49 MiB 46.87 MiB 48.94 MiB 48.10 MiB create index ix_chem_disease_ref_source_cd on pub2.chem_disease_reference using btree (source_cd);-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub2.chem_disease_reference USING btree (source_cd);
Date: 2024-06-26 20:31:45 Duration: 1s913ms
-
CREATE INDEX ix_chem_disease_ref_source_cd ON pub2.chem_disease_reference USING btree (source_cd);
Date: 2024-06-26 20:31:45 Duration: 0ms
51 5 627.62 MiB 113.69 MiB 130.48 MiB 125.53 MiB create index ix_gene_disease_disease on pub2.gene_disease using btree (disease_id);-
CREATE INDEX ix_gene_disease_disease ON pub2.gene_disease USING btree (disease_id);
Date: 2024-06-26 23:01:49 Duration: 7s143ms
-
CREATE INDEX ix_gene_disease_disease ON pub2.gene_disease USING btree (disease_id);
Date: 2024-06-26 23:01:49 Duration: 0ms
52 5 627.62 MiB 115.67 MiB 130.75 MiB 125.53 MiB create index ix_gene_disease_network_score on pub2.gene_disease using btree (network_score);-
CREATE INDEX ix_gene_disease_network_score ON pub2.gene_disease USING btree (network_score);
Date: 2024-06-26 23:01:42 Duration: 14s829ms
-
CREATE INDEX ix_gene_disease_network_score ON pub2.gene_disease USING btree (network_score);
Date: 2024-06-26 23:01:42 Duration: 0ms
53 5 1005.74 MiB 197.41 MiB 212.16 MiB 201.15 MiB create index ix_phenotype_term_ref_reference_id on pub2.phenotype_term_reference using btree (reference_id);-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub2.phenotype_term_reference USING btree (reference_id);
Date: 2024-06-26 20:30:22 Duration: 10s635ms
-
CREATE INDEX ix_phenotype_term_ref_reference_id ON pub2.phenotype_term_reference USING btree (reference_id);
Date: 2024-06-26 20:30:22 Duration: 0ms
54 5 1005.75 MiB 197.69 MiB 204.06 MiB 201.15 MiB create index ix_phenotype_term_ref_evidence_cd on pub2.phenotype_term_reference using btree (evidence_cd);-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub2.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-06-26 20:30:36 Duration: 7s621ms
-
CREATE INDEX ix_phenotype_term_ref_evidence_cd ON pub2.phenotype_term_reference USING btree (evidence_cd);
Date: 2024-06-26 20:30:36 Duration: 0ms
55 5 240.49 MiB 45.73 MiB 50.16 MiB 48.10 MiB create index ix_chem_disease_ref_src_db on pub2.chem_disease_reference using btree (source_acc_db_id);-
CREATE INDEX ix_chem_disease_ref_src_db ON pub2.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-06-26 20:31:47 Duration: 1s847ms
-
CREATE INDEX ix_chem_disease_ref_src_db ON pub2.chem_disease_reference USING btree (source_acc_db_id);
Date: 2024-06-26 20:31:47 Duration: 0ms
56 5 1005.75 MiB 197.88 MiB 204.42 MiB 201.15 MiB create index ix_phenotype_term_reference_source_acc_db_id on pub2.phenotype_term_reference using btree (source_acc_db_id);-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub2.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-06-26 20:30:44 Duration: 7s440ms
-
CREATE INDEX ix_phenotype_term_reference_source_acc_db_id ON pub2.phenotype_term_reference USING btree (source_acc_db_id);
Date: 2024-06-26 20:30:44 Duration: 0ms
57 5 62.56 MiB 9.87 MiB 13.33 MiB 12.51 MiB create index ix_phenotype_term_phenotype_id on pub2.phenotype_term using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_phenotype_id ON pub2.phenotype_term USING btree (phenotype_id);
Date: 2024-06-26 23:01:51 Duration: 0ms
58 5 1005.73 MiB 196.52 MiB 207.76 MiB 201.15 MiB create index ix_phenotype_term_reference_ixn_id on pub2.phenotype_term_reference using btree (ixn_id);-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub2.phenotype_term_reference USING btree (ixn_id);
Date: 2024-06-26 20:31:05 Duration: 10s291ms
-
CREATE INDEX ix_phenotype_term_reference_ixn_id ON pub2.phenotype_term_reference USING btree (ixn_id);
Date: 2024-06-26 20:31:05 Duration: 0ms
59 5 156.30 MiB 29.59 MiB 32.38 MiB 31.26 MiB create index ix_term_enrich_obj_type on pub2.term_enrichment using btree (object_type_id);-
CREATE INDEX ix_term_enrich_obj_type ON pub2.term_enrichment USING btree (object_type_id);
Date: 2024-06-26 22:30:28 Duration: 1s677ms
-
CREATE INDEX ix_term_enrich_obj_type ON pub2.term_enrichment USING btree (object_type_id);
Date: 2024-06-26 22:30:28 Duration: 0ms Database: ctdprd51 User: pub2
60 5 1005.74 MiB 194.09 MiB 207.18 MiB 201.15 MiB create index ix_phenotype_term_reference_term_reference_id on pub2.phenotype_term_reference using btree (term_reference_id);-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub2.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-06-26 20:30:54 Duration: 10s497ms
-
CREATE INDEX ix_phenotype_term_reference_term_reference_id ON pub2.phenotype_term_reference USING btree (term_reference_id);
Date: 2024-06-26 20:30:54 Duration: 0ms
61 4 13.12 MiB 8.00 KiB 6.70 MiB 3.28 MiB alter table pub2.phenotype_term_axn add constraint phenotype_term_axn_pk primary key (phenotype_id, term_id, action_type_nm, action_degree_type_nm);-
ALTER TABLE pub2.phenotype_term_axn ADD CONSTRAINT phenotype_term_axn_pk PRIMARY KEY (phenotype_id, term_id, action_type_nm, action_degree_type_nm);
Date: 2024-06-26 23:01:52 Duration: 0ms
62 4 1.98 MiB 480.00 KiB 528.00 KiB 506.00 KiB create index ix_chem_disease_cur_ref_qty on pub2.chem_disease using btree (curated_reference_qty) where (curated_reference_qty > ?);-
CREATE INDEX ix_chem_disease_cur_ref_qty ON pub2.chem_disease USING btree (curated_reference_qty) WHERE (curated_reference_qty > 0);
Date: 2024-06-26 23:01:53 Duration: 0ms
63 4 63.33 MiB 14.21 MiB 16.46 MiB 15.83 MiB create index ix_chem_disease_disease on pub2.chem_disease using btree (disease_id);-
CREATE INDEX ix_chem_disease_disease ON pub2.chem_disease USING btree (disease_id);
Date: 2024-06-26 23:01:56 Duration: 0ms
64 4 62.45 MiB 15.37 MiB 15.95 MiB 15.61 MiB create index ix_chem_disease_ind_gene_qty on pub2.chem_disease using btree (indirect_gene_qty) where (indirect_gene_qty > ?);-
CREATE INDEX ix_chem_disease_ind_gene_qty ON pub2.chem_disease USING btree (indirect_gene_qty) WHERE (indirect_gene_qty > 0);
Date: 2024-06-26 23:01:53 Duration: 0ms
65 4 63.33 MiB 13.05 MiB 18.40 MiB 15.83 MiB create index ix_chem_disease_network_score on pub2.chem_disease using btree (network_score);-
CREATE INDEX ix_chem_disease_network_score ON pub2.chem_disease USING btree (network_score);
Date: 2024-06-26 23:01:56 Duration: 1s503ms
-
CREATE INDEX ix_chem_disease_network_score ON pub2.chem_disease USING btree (network_score);
Date: 2024-06-26 23:01:56 Duration: 0ms
66 4 32.00 KiB 8.00 KiB 8.00 KiB 8.00 KiB create index ix_chem_disease_exp_ref_qty on pub2.chem_disease using btree (exposure_reference_qty) where (exposure_reference_qty > ?);-
CREATE INDEX ix_chem_disease_exp_ref_qty ON pub2.chem_disease USING btree (exposure_reference_qty) WHERE (exposure_reference_qty > 0);
Date: 2024-06-26 23:01:53 Duration: 0ms
67 2 5.95 MiB 2.45 MiB 3.50 MiB 2.97 MiB create index ix_phenotype_term_axn_phenotype_id on pub2.phenotype_term_axn using btree (phenotype_id);-
CREATE INDEX ix_phenotype_term_axn_phenotype_id ON pub2.phenotype_term_axn USING btree (phenotype_id);
Date: 2024-06-26 23:01:52 Duration: 0ms
68 2 5.95 MiB 2.43 MiB 3.52 MiB 2.97 MiB create index ix_phenotype_term_axn_term_id on pub2.phenotype_term_axn using btree (term_id);-
CREATE INDEX ix_phenotype_term_axn_term_id ON pub2.phenotype_term_axn USING btree (term_id);
Date: 2024-06-26 23:01:52 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
2 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
3 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
4 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
5 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
6 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
7 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
8 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
9 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:38 ]
10 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
11 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
12 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
13 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
14 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
15 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
16 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
17 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
18 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
19 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
20 1.00 GiB select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn;[ Date: 2024-06-26 18:39:39 ]
-
Vacuums
Vacuums / Analyzes Distribution
Key values
- 251.32 sec Highest CPU-cost vacuum
Table pub2.gene_disease
Database ctdprd51 - 2024-06-26 23:35:40 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 251.32 sec Highest CPU-cost vacuum
Table pub2.gene_disease
Database ctdprd51 - 2024-06-26 23:35:40 Date
Analyzes per table
Key values
- pubc.log_query (27) Main table analyzed (database ctdprd51)
- 80 analyzes Total
Table Number of analyzes ctdprd51.pubc.log_query 27 ctdprd51.pub2.term 3 ctdprd51.pub2.db 2 ctdprd51.pub2.dag_node 2 ctdprd51.pub2.reference 2 ctdprd51.pub2.ixn 1 ctdprd51.pub2.exp_stressor 1 ctdprd51.pub2.exp_outcome 1 ctdprd51.pub2.reference_party 1 ctdprd51.pub2.gene_taxon 1 ctdprd51.pub2.reference_party_role 1 ctdprd51.pub2.dag_edge 1 ctdprd51.pub2.exp_event_location 1 ctdprd51.pub2.term_pathway 1 ctdprd51.pub2.gene_disease 1 ctdprd51.pub2.exp_receptor_tobacco_use 1 ctdprd51.pub2.term_label 1 ctdprd51.pub2.db_link 1 ctdprd51.pub2.gene_gene_reference 1 ctdprd51.pub2.gene_go_annot 1 ctdprd51.pub1.term_set_enrichment_agent 1 ctdprd51.pub2.exp_event_assay_method 1 ctdprd51.pg_catalog.pg_attribute 1 ctdprd51.pub2.img 1 ctdprd51.pub2.exp_event_project 1 ctdprd51.pub2.medium 1 ctdprd51.pub2.geographic_region 1 ctdprd51.pg_catalog.pg_index 1 ctdprd51.pub2.gene_gene 1 ctdprd51.pg_catalog.pg_class 1 ctdprd51.pub2.list_db_report 1 ctdprd51.pub2.exp_stressor_stressor_src 1 ctdprd51.pub2.phenotype_term 1 ctdprd51.pub2.chem_disease 1 ctdprd51.pub2.db_report 1 ctdprd51.pub2.action_type 1 ctdprd51.pub2.reference_exp 1 ctdprd51.pub2.exp_study_factor 1 ctdprd51.pub2.exp_anatomy 1 ctdprd51.pub2.gene_gene_ref_throughput 1 ctdprd51.pub2.db_report_site 1 ctdprd51.pub2.exposure 1 ctdprd51.pub2.country 1 ctdprd51.pub2.exp_receptor_gender 1 ctdprd51.pub2.exp_receptor 1 ctdprd51.pub2.exp_event 1 ctdprd51.edit.object_note 1 ctdprd51.pub2.slim_term_mapping 1 ctdprd51.pub2.exp_receptor_race 1 Total 80 Vacuums per table
Key values
- pubc.log_query (7) Main table vacuumed on database ctdprd51
- 54 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pubc.log_query 7 5 6,591 0 1,071 0 570 2,427 107 890,055 ctdprd51.pub2.term 3 1 540,395 0 2,410 0 0 387,587 77,581 278,720,271 ctdprd51.pub2.dag_node 2 1 400,121 0 603 0 0 313,317 592 94,155,293 ctdprd51.pub2.reference 2 1 303,487 0 10 0 0 205,749 9 15,552,627 ctdprd51.pg_catalog.pg_statistic 2 2 1,243 0 232 0 29 529 199 820,394 ctdprd51.pg_toast.pg_toast_2619 1 1 4,030 0 1,077 0 10,519 3,052 1,015 476,477 ctdprd51.pub2.chem_disease 1 1 262,030 0 9,557 0 0 160,153 9,546 115,839,310 ctdprd51.pub2.reference_exp 1 0 326 0 4 0 0 126 2 21,353 ctdprd51.pub2.gene_gene 1 0 11,881 0 5 0 0 5,889 2 361,410 ctdprd51.pg_catalog.pg_class 1 1 328 0 54 0 0 154 49 222,368 ctdprd51.pub2.exp_stressor_stressor_src 1 0 2,567 0 4 0 0 1,255 1 82,464 ctdprd51.pub2.phenotype_term 1 1 204,281 0 587 0 0 156,596 44,638 111,875,228 ctdprd51.pub2.gene_gene_ref_throughput 1 0 14,322 0 4 0 0 7,138 2 435,061 ctdprd51.pub2.exp_receptor 1 0 7,254 0 3 0 0 3,598 1 220,701 ctdprd51.pub2.exposure 1 0 3,631 0 3 0 0 1,762 1 112,377 ctdprd51.pub2.exp_event 1 0 12,344 0 3 0 0 6,078 1 367,021 ctdprd51.pub2.exp_receptor_gender 1 0 2,662 0 3 0 0 1,316 1 86,063 ctdprd51.edit.object_note 1 1 168 0 2 0 0 12 2 17,673 ctdprd51.pub2.slim_term_mapping 1 0 600 0 4 0 0 262 2 27,525 ctdprd51.pub2.exp_receptor_race 1 0 1,313 0 3 0 0 621 1 45,058 ctdprd51.pub2.exp_study_factor 1 0 113 0 15 0 0 11 2 13,408 ctdprd51.pub2.exp_anatomy 1 0 160 0 3 0 0 34 1 10,425 ctdprd51.pg_toast.pg_toast_5519453 1 1 90 0 3 0 0 49 10 11,937 ctdprd51.pub2.exp_stressor 1 0 5,993 0 4 0 0 2,967 2 187,812 ctdprd51.pub2.exp_outcome 1 0 572 0 4 0 0 228 2 26,703 ctdprd51.pub2.gene_taxon 1 0 135,736 0 5 0 0 67,811 3 4,025,662 ctdprd51.pub2.reference_party 1 0 5,063 0 4 0 0 2,498 2 162,693 ctdprd51.pub2.reference_party_role 1 0 13,299 0 5 0 0 6,596 2 402,407 ctdprd51.pub2.dag_edge 1 0 1,053 0 5 0 0 482 2 42,145 ctdprd51.pub2.exp_event_location 1 0 3,402 0 3 0 0 1,650 1 105,769 ctdprd51.pub2.term_pathway 1 0 3,336 0 4 0 0 1,614 2 107,141 ctdprd51.pub2.gene_disease 1 1 2,803,701 0 775,294 0 0 1,587,205 726,432 2,020,047,527 ctdprd51.pub2.db 1 1 112 0 15 0 0 17 9 28,181 ctdprd51.pub2.exp_receptor_tobacco_use 1 0 1,187 0 3 0 0 558 1 41,341 ctdprd51.pub2.term_label 1 0 178,507 0 17,037 0 0 89,186 4 5,290,283 ctdprd51.pub2.ixn 1 1 1,439,739 0 88 0 0 960,252 45,896 232,548,836 ctdprd51.pub2.img 1 0 1,108 0 5 0 0 524 2 46,359 ctdprd51.pub2.exp_event_project 1 0 2,016 0 3 0 0 986 1 66,593 ctdprd51.pub2.gene_gene_reference 1 0 29,916 0 3 0 0 14,882 1 886,457 ctdprd51.pub2.db_link 1 0 230,994 0 84,664 0 0 115,336 5 6,845,542 ctdprd51.pub2.gene_go_annot 1 0 510,867 0 255,336 0 0 255,325 10 15,145,194 ctdprd51.pg_toast.pg_toast_5519522 1 0 86,889 0 4 0 0 43,437 2 2,579,306 ctdprd51.pub2.exp_event_assay_method 1 0 4,745 0 3 0 0 2,344 1 146,715 Total 54 19 7,238,172 141,910 1,148,149 0 11,118 4,411,613 906,145 2,909,097,165 Tuples removed per table
Key values
- pub2.gene_disease (32839894) Main table with removed tuples on database ctdprd51
- 43392973 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pub2.gene_disease 1 1 32,839,894 32,839,894 0 0 482,940 ctdprd51.pub2.chem_disease 1 1 3,313,187 3,313,187 0 0 48,674 ctdprd51.pub2.phenotype_term 1 1 3,272,910 3,272,910 0 0 61,176 ctdprd51.pub2.term 3 1 2,093,428 4,224,418 0 0 163,293 ctdprd51.pub2.dag_node 2 1 1,711,272 3,407,982 0 0 123,234 ctdprd51.pub2.reference 2 1 93,859 393,147 0 0 114,746 ctdprd51.pub2.ixn 1 1 53,468 2,233,611 0 0 527,108 ctdprd51.pubc.log_query 7 5 9,953 41,953 9,886 0 2,607 ctdprd51.pg_toast.pg_toast_2619 1 1 3,865 18,670 38 0 12,592 ctdprd51.pg_catalog.pg_statistic 2 2 746 3,640 0 0 580 ctdprd51.pg_catalog.pg_class 1 1 130 1,758 0 0 61 ctdprd51.pub2.db 1 1 130 130 0 0 6 ctdprd51.pg_toast.pg_toast_5519453 1 1 70 69 0 0 21 ctdprd51.edit.object_note 1 1 61 33 0 0 3 ctdprd51.pub2.reference_exp 1 0 0 3,450 0 0 125 ctdprd51.pub2.gene_gene 1 0 0 1,089,115 0 0 5,888 ctdprd51.pub2.exp_stressor_stressor_src 1 0 0 283,222 0 0 1,254 ctdprd51.pub2.gene_gene_ref_throughput 1 0 0 1,372,433 0 0 7,137 ctdprd51.pub2.exp_receptor 1 0 0 190,369 0 0 3,597 ctdprd51.pub2.exposure 1 0 0 213,899 0 0 1,761 ctdprd51.pub2.exp_event 1 0 0 206,810 0 0 6,077 ctdprd51.pub2.exp_receptor_gender 1 0 0 187,612 0 0 1,315 ctdprd51.pub2.slim_term_mapping 1 0 0 32,795 0 0 261 ctdprd51.pub2.exp_receptor_race 1 0 0 95,671 0 0 620 ctdprd51.pub2.exp_study_factor 1 0 0 1,617 0 0 10 ctdprd51.pub2.exp_anatomy 1 0 0 3,853 0 0 33 ctdprd51.pub2.exp_stressor 1 0 0 206,971 0 0 2,966 ctdprd51.pub2.exp_outcome 1 0 0 12,817 0 0 227 ctdprd51.pub2.gene_taxon 1 0 0 10,646,095 0 0 67,810 ctdprd51.pub2.reference_party 1 0 0 447,069 0 0 2,497 ctdprd51.pub2.reference_party_role 1 0 0 1,219,976 0 0 6,595 ctdprd51.pub2.dag_edge 1 0 0 88,931 0 0 481 ctdprd51.pub2.exp_event_location 1 0 0 248,388 0 0 1,649 ctdprd51.pub2.term_pathway 1 0 0 135,792 0 0 1,613 ctdprd51.pub2.exp_receptor_tobacco_use 1 0 0 78,937 0 0 557 ctdprd51.pub2.term_label 1 0 0 6,063,845 0 0 89,185 ctdprd51.pub2.img 1 0 0 50,714 0 0 523 ctdprd51.pub2.exp_event_project 1 0 0 94,501 0 0 985 ctdprd51.pub2.gene_gene_reference 1 0 0 1,366,819 0 0 14,881 ctdprd51.pub2.db_link 1 0 0 15,990,608 0 0 115,335 ctdprd51.pub2.gene_go_annot 1 0 0 40,088,000 0 0 255,324 ctdprd51.pg_toast.pg_toast_5519522 1 0 0 234,913 0 0 43,436 ctdprd51.pub2.exp_event_assay_method 1 0 0 235,134 0 0 2,343 Total 54 19 43,392,973 130,641,758 9,924 0 2,171,526 Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Pages removed per tables
NO DATASET
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pg_toast.pg_toast_2619 1 1 3865 0 ctdprd51.pub2.chem_disease 1 1 3313187 0 ctdprd51.pub2.reference_exp 1 0 0 0 ctdprd51.pub2.gene_gene 1 0 0 0 ctdprd51.pg_catalog.pg_class 1 1 130 0 ctdprd51.pub2.dag_node 2 1 1711272 0 ctdprd51.pub2.exp_stressor_stressor_src 1 0 0 0 ctdprd51.pub2.phenotype_term 1 1 3272910 0 ctdprd51.pub2.gene_gene_ref_throughput 1 0 0 0 ctdprd51.pub2.exp_receptor 1 0 0 0 ctdprd51.pub2.exposure 1 0 0 0 ctdprd51.pub2.exp_event 1 0 0 0 ctdprd51.pub2.exp_receptor_gender 1 0 0 0 ctdprd51.pub2.reference 2 1 93859 0 ctdprd51.edit.object_note 1 1 61 0 ctdprd51.pub2.slim_term_mapping 1 0 0 0 ctdprd51.pub2.exp_receptor_race 1 0 0 0 ctdprd51.pub2.exp_study_factor 1 0 0 0 ctdprd51.pub2.term 3 1 2093428 0 ctdprd51.pub2.exp_anatomy 1 0 0 0 ctdprd51.pubc.log_query 7 5 9953 0 ctdprd51.pg_toast.pg_toast_5519453 1 1 70 0 ctdprd51.pub2.exp_stressor 1 0 0 0 ctdprd51.pub2.exp_outcome 1 0 0 0 ctdprd51.pub2.gene_taxon 1 0 0 0 ctdprd51.pub2.reference_party 1 0 0 0 ctdprd51.pub2.reference_party_role 1 0 0 0 ctdprd51.pub2.dag_edge 1 0 0 0 ctdprd51.pub2.exp_event_location 1 0 0 0 ctdprd51.pub2.term_pathway 1 0 0 0 ctdprd51.pub2.gene_disease 1 1 32839894 0 ctdprd51.pub2.db 1 1 130 0 ctdprd51.pub2.exp_receptor_tobacco_use 1 0 0 0 ctdprd51.pg_catalog.pg_statistic 2 2 746 0 ctdprd51.pub2.term_label 1 0 0 0 ctdprd51.pub2.ixn 1 1 53468 0 ctdprd51.pub2.img 1 0 0 0 ctdprd51.pub2.exp_event_project 1 0 0 0 ctdprd51.pub2.gene_gene_reference 1 0 0 0 ctdprd51.pub2.db_link 1 0 0 0 ctdprd51.pub2.gene_go_annot 1 0 0 0 ctdprd51.pg_toast.pg_toast_5519522 1 0 0 0 ctdprd51.pub2.exp_event_assay_method 1 0 0 0 Total 54 19 43,392,973 0 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Jun 26 00 0 1 01 0 2 02 0 2 03 0 2 04 0 2 05 0 3 06 0 1 07 0 0 08 0 1 09 0 7 10 0 0 11 0 2 12 0 0 13 0 1 14 0 0 15 0 1 16 0 13 17 0 8 18 0 0 19 0 1 20 0 0 21 0 2 22 0 2 23 0 29 - 251.32 sec Highest CPU-cost vacuum
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Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
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Queries
Queries by type
Key values
- 1,542 Total read queries
- 130 Total write queries
Queries by database
Key values
- unknown Main database
- 1,164 Requests
- 6h11m50s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 1,679 Requests
User Request type Count Duration edit Total 1 5s547ms select 1 5s547ms editeu Total 2 6s823ms select 2 6s823ms load Total 32 24m21s others 1 2s609ms select 31 24m18s postgres Total 16 6m19s copy to 16 6m19s pub2 Total 6 12m9s ddl 1 4s236ms insert 3 11m55s select 2 10s147ms pubeu Total 765 2h46m52s cte 6 14s197ms select 759 2h46m38s qaeu Total 10 28s107ms cte 2 6s668ms select 8 21s439ms unknown Total 1,679 7h28m47s copy to 63 7m32s cte 6 13s933ms ddl 50 37m35s insert 26 38m50s others 10 2m51s select 1,515 5h30m17s update 9 31m25s Duration by user
Key values
- 7h28m47s (unknown) Main time consuming user
User Request type Count Duration edit Total 1 5s547ms select 1 5s547ms editeu Total 2 6s823ms select 2 6s823ms load Total 32 24m21s others 1 2s609ms select 31 24m18s postgres Total 16 6m19s copy to 16 6m19s pub2 Total 6 12m9s ddl 1 4s236ms insert 3 11m55s select 2 10s147ms pubeu Total 765 2h46m52s cte 6 14s197ms select 759 2h46m38s qaeu Total 10 28s107ms cte 2 6s668ms select 8 21s439ms unknown Total 1,679 7h28m47s copy to 63 7m32s cte 6 13s933ms ddl 50 37m35s insert 26 38m50s others 10 2m51s select 1,515 5h30m17s update 9 31m25s Queries by host
Key values
- unknown Main host
- 2,511 Requests
- 10h59m9s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 1,657 Requests
- 7h48m20s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2024-06-26 14:31:33 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 1,523 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 39m27s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-06-26 20:00:13 - Bind query: yes ]
2 37m12s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');[ Date: 2024-06-26 19:20:40 - Bind query: yes ]
3 34m16s SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;[ Date: 2024-06-26 17:50:22 - Bind query: yes ]
4 23m36s update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));[ Date: 2024-06-26 23:31:10 - Bind query: yes ]
5 23m22s insert into pub2.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;[ Date: 2024-06-26 17:07:59 - Bind query: yes ]
6 17m44s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-06-26 09:53:01 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
7 17m28s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-06-26 10:00:17 - Bind query: yes ]
8 17m21s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-06-26 21:49:51 - Bind query: yes ]
9 16m16s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2024-06-26 00:16:18 ]
10 12m23s ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);[ Date: 2024-06-26 22:43:07 - Bind query: yes ]
11 11m25s insert into pub2.DB_LINK (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.DB_LINK;[ Date: 2024-06-26 16:39:16 - Database: ctdprd51 - User: pub2 - Bind query: yes ]
12 10m22s select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');[ Date: 2024-06-26 18:03:30 - Database: ctdprd51 - User: load - Bind query: yes ]
13 10m10s SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Name */ gi.id gene_id FROM term gi WHERE gi.object_type_id = 4 AND UPPER(gi.nm) LIKE 'CCNA2') INTERSECT ( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN db_link dbli ON dbli.object_id = pi.ancestor_object_id WHERE dbli.acc_txt = 'GO:0008150' AND dbli.type_cd = 'A' AND dbli.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA04110' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;[ Date: 2024-06-26 13:59:58 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
14 9m SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1251738') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-06-26 09:44:14 - Bind query: yes ]
15 8m46s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1251738') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-06-26 09:51:36 - Bind query: yes ]
16 8m38s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1251738') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2024-06-26 21:41:09 - Bind query: yes ]
17 6m27s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');[ Date: 2024-06-26 20:11:16 - Database: ctdprd51 - User: load - Application: pg_bulkload - Bind query: yes ]
18 5m17s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50 OFFSET 50;[ Date: 2024-06-26 00:30:46 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
19 5m12s SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');[ Date: 2024-06-26 20:38:46 - Bind query: yes ]
20 4m38s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50 OFFSET 50;[ Date: 2024-06-26 00:28:26 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 1h26m49s 13 2s55ms 17m44s 6m40s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 26 02 1 2s55ms 2s55ms 06 1 3m37s 3m37s 09 5 35m48s 7m9s 10 1 17m28s 17m28s 14 1 2m25s 2m25s 21 3 26m6s 8m42s 22 1 1m20s 1m20s [ User: pubeu - Total duration: 20m29s - Times executed: 5 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 09:53:01 Duration: 17m44s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 10:00:17 Duration: 17m28s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 21:49:51 Duration: 17m21s Bind query: yes
2 39m27s 1 39m27s 39m27s 39m27s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.gene_go_annot gga, pub2.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 26 20 1 39m27s 39m27s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 20:00:13 Duration: 39m27s Bind query: yes
3 37m12s 1 37m12s 37m12s 37m12s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.object_type where cd = ?), ptr.term_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.phenotype_term_reference ptr, pub2.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 26 19 1 37m12s 37m12s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 19:20:40 Duration: 37m12s Bind query: yes
4 34m16s 1 34m16s 34m16s 34m16s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 26 17 1 34m16s 34m16s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-06-26 17:50:22 Duration: 34m16s Bind query: yes
5 23m36s 1 23m36s 23m36s 23m36s update pub2.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.reference r where has_exposures = true));Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 26 23 1 23m36s 23m36s -
update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));
Date: 2024-06-26 23:31:10 Duration: 23m36s Bind query: yes
6 23m22s 1 23m22s 23m22s 23m22s insert into pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 26 17 1 23m22s 23m22s -
insert into pub2.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-06-26 17:07:59 Duration: 23m22s Bind query: yes
7 23m17s 33 1s385ms 6m27s 42s356ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 26 17 6 1m7s 11s193ms 20 6 14m28s 2m24s 21 14 4m 17s204ms 22 4 3m18s 49s702ms 23 3 22s751ms 7s583ms [ User: load - Total duration: 12m53s - Times executed: 17 ]
[ Application: pg_bulkload - Total duration: 12m53s - Times executed: 17 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-06-26 20:11:16 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-06-26 20:38:46 Duration: 5m12s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-06-26 22:27:50 Duration: 2m54s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
8 17m13s 167 1s58ms 22s236ms 6s188ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 26 00 1 2s389ms 2s389ms 02 1 1s108ms 1s108ms 09 114 12m41s 6s682ms 10 2 4s946ms 2s473ms 15 1 1s383ms 1s383ms 19 1 2s231ms 2s231ms 21 45 4m15s 5s672ms 22 2 4s437ms 2s218ms [ User: pubeu - Total duration: 6m27s - Times executed: 60 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2074152') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:08 Duration: 22s236ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080955') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:07 Duration: 21s513ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2068897') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:00 Duration: 20s678ms Bind query: yes
9 16m16s 1 16m16s 16m16s 16m16s select maint_query_logs_archive ();Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 26 00 1 16m16s 16m16s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-06-26 00:16:18 Duration: 16m16s
10 14m13s 21 2s365ms 10m22s 40s656ms select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 26 18 21 14m13s 40s656ms [ User: load - Total duration: 10m22s - Times executed: 1 ]
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:03:30 Duration: 10m22s Database: ctdprd51 User: load Bind query: yes
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:20:14 Duration: 50s352ms Bind query: yes
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:25:40 Duration: 47s792ms Bind query: yes
11 12m23s 1 12m23s 12m23s 12m23s alter table pub2.term_enrichment_agent add constraint term_enr_agent_term_enr_fk foreign key (term_id, enriched_term_id) references term_enrichment (term_id, enriched_term_id);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 26 22 1 12m23s 12m23s -
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);
Date: 2024-06-26 22:43:07 Duration: 12m23s Bind query: yes
12 11m25s 1 11m25s 11m25s 11m25s insert into pub2.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.db_link;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 26 16 1 11m25s 11m25s [ User: pub2 - Total duration: 11m25s - Times executed: 1 ]
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insert into pub2.DB_LINK (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.DB_LINK;
Date: 2024-06-26 16:39:16 Duration: 11m25s Database: ctdprd51 User: pub2 Bind query: yes
13 10m10s 1 10m10s 10m10s 10m10s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select gi.id gene_id from term gi where gi.object_type_id = ? and upper(gi.nm) like ?) intersect ( select ai.gene_id from dag_path pi inner join gene_go_annot ai on pi.descendant_object_id = ai.go_term_id inner join db_link dbli on dbli.object_id = pi.ancestor_object_id where dbli.acc_txt = ? and dbli.type_cd = ? and dbli.object_type_id = ?) intersect ( select tp.term_id from term_pathway tp where tp.object_type_id = ? and upper(tp.pathway_acc_txt) = ? and tp.pathway_acc_db_cd = ?))) and gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 26 13 1 10m10s 10m10s [ User: pubeu - Total duration: 10m10s - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Name */ gi.id gene_id FROM term gi WHERE gi.object_type_id = 4 AND UPPER(gi.nm) LIKE 'CCNA2') INTERSECT ( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN db_link dbli ON dbli.object_id = pi.ancestor_object_id WHERE dbli.acc_txt = 'GO:0008150' AND dbli.type_cd = 'A' AND dbli.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA04110' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-06-26 13:59:58 Duration: 10m10s Database: ctdprd51 User: pubeu Bind query: yes
14 9m56s 2 4m38s 5m17s 4m58s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by referencecount desc limit ? offset ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 26 00 2 9m56s 4m58s [ User: pubeu - Total duration: 9m56s - Times executed: 2 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50 OFFSET 50;
Date: 2024-06-26 00:30:46 Duration: 5m17s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50 OFFSET 50;
Date: 2024-06-26 00:28:26 Duration: 4m38s Database: ctdprd51 User: pubeu Bind query: yes
15 6m58s 149 1s2ms 9s538ms 2s809ms select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 26 09 101 5m24s 3s211ms 21 48 1m34s 1s961ms [ User: pubeu - Total duration: 1m2s - Times executed: 25 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076012');
Date: 2024-06-26 09:43:55 Duration: 9s538ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2073677');
Date: 2024-06-26 09:43:59 Duration: 9s161ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2072917');
Date: 2024-06-26 09:23:55 Duration: 8s807ms Bind query: yes
16 6m14s 315 1s84ms 2s817ms 1s189ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 26 00 10 11s708ms 1s170ms 01 11 13s109ms 1s191ms 02 11 12s943ms 1s176ms 03 6 7s43ms 1s173ms 04 15 17s887ms 1s192ms 05 12 14s298ms 1s191ms 06 8 9s420ms 1s177ms 07 6 7s53ms 1s175ms 08 15 17s791ms 1s186ms 09 28 35s999ms 1s285ms 10 14 16s442ms 1s174ms 11 13 15s360ms 1s181ms 12 16 18s776ms 1s173ms 13 3 3s508ms 1s169ms 14 16 18s849ms 1s178ms 15 7 8s283ms 1s183ms 16 10 11s722ms 1s172ms 17 12 13s843ms 1s153ms 18 8 9s227ms 1s153ms 19 4 4s610ms 1s152ms 20 16 18s719ms 1s169ms 21 39 47s362ms 1s214ms 22 24 27s965ms 1s165ms 23 11 12s804ms 1s164ms [ User: pubeu - Total duration: 2m28s - Times executed: 127 ]
[ User: qaeu - Total duration: 1s266ms - Times executed: 1 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1431620' or receptorTerm.id = '1431620' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 09:44:03 Duration: 2s817ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1431600' or receptorTerm.id = '1431600' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 21:32:40 Duration: 2s776ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2026509' or receptorTerm.id = '2026509' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 09:38:41 Duration: 2s132ms Bind query: yes
17 5m6s 21 1s11ms 47s624ms 14s583ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 26 06 1 1s15ms 1s15ms 09 10 2m23s 14s317ms 19 1 1s78ms 1s78ms 21 6 1m7s 11s239ms 23 3 1m33s 31s183ms [ User: pubeu - Total duration: 2m47s - Times executed: 10 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 23:45:55 Duration: 47s624ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 23:45:55 Duration: 44s912ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 09:35:44 Duration: 26s295ms Bind query: yes
18 4m37s 2 1s413ms 4m36s 2m18s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ? offset ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 26 00 1 4m36s 4m36s 02 1 1s413ms 1s413ms [ User: pubeu - Total duration: 4m36s - Times executed: 1 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 150;
Date: 2024-06-26 00:14:43 Duration: 4m36s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1236554') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 184300;
Date: 2024-06-26 02:29:24 Duration: 1s413ms Bind query: yes
19 4m32s 1 4m32s 4m32s 4m32s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by referencecount desc limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 26 00 1 4m32s 4m32s [ User: pubeu - Total duration: 4m32s - Times executed: 1 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50;
Date: 2024-06-26 00:17:39 Duration: 4m32s Database: ctdprd51 User: pubeu Bind query: yes
20 3m58s 51 1s 7s763ms 4s678ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 26 02 1 5s546ms 5s546ms 03 1 5s209ms 5s209ms 05 1 4s931ms 4s931ms 06 2 6s405ms 3s202ms 08 1 5s445ms 5s445ms 09 13 1m10s 5s384ms 11 3 10s801ms 3s600ms 12 3 11s769ms 3s923ms 13 3 16s545ms 5s515ms 14 3 7s639ms 2s546ms 15 1 4s814ms 4s814ms 16 2 10s762ms 5s381ms 18 2 6s143ms 3s71ms 20 2 6s892ms 3s446ms 21 11 57s553ms 5s232ms 22 2 8s128ms 4s64ms [ User: pubeu - Total duration: 57s935ms - Times executed: 14 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1254557' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 09:25:05 Duration: 7s763ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1408637' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 22:46:49 Duration: 7s66ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1319639' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 21:33:01 Duration: 6s612ms Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 315 6m14s 1s84ms 2s817ms 1s189ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 26 00 10 11s708ms 1s170ms 01 11 13s109ms 1s191ms 02 11 12s943ms 1s176ms 03 6 7s43ms 1s173ms 04 15 17s887ms 1s192ms 05 12 14s298ms 1s191ms 06 8 9s420ms 1s177ms 07 6 7s53ms 1s175ms 08 15 17s791ms 1s186ms 09 28 35s999ms 1s285ms 10 14 16s442ms 1s174ms 11 13 15s360ms 1s181ms 12 16 18s776ms 1s173ms 13 3 3s508ms 1s169ms 14 16 18s849ms 1s178ms 15 7 8s283ms 1s183ms 16 10 11s722ms 1s172ms 17 12 13s843ms 1s153ms 18 8 9s227ms 1s153ms 19 4 4s610ms 1s152ms 20 16 18s719ms 1s169ms 21 39 47s362ms 1s214ms 22 24 27s965ms 1s165ms 23 11 12s804ms 1s164ms [ User: pubeu - Total duration: 2m28s - Times executed: 127 ]
[ User: qaeu - Total duration: 1s266ms - Times executed: 1 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1431620' or receptorTerm.id = '1431620' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 09:44:03 Duration: 2s817ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1431600' or receptorTerm.id = '1431600' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 21:32:40 Duration: 2s776ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '2026509' or receptorTerm.id = '2026509' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 09:38:41 Duration: 2s132ms Bind query: yes
2 167 17m13s 1s58ms 22s236ms 6s188ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 26 00 1 2s389ms 2s389ms 02 1 1s108ms 1s108ms 09 114 12m41s 6s682ms 10 2 4s946ms 2s473ms 15 1 1s383ms 1s383ms 19 1 2s231ms 2s231ms 21 45 4m15s 5s672ms 22 2 4s437ms 2s218ms [ User: pubeu - Total duration: 6m27s - Times executed: 60 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2074152') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:08 Duration: 22s236ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080955') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:07 Duration: 21s513ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2068897') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:00 Duration: 20s678ms Bind query: yes
3 149 6m58s 1s2ms 9s538ms 2s809ms select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 26 09 101 5m24s 3s211ms 21 48 1m34s 1s961ms [ User: pubeu - Total duration: 1m2s - Times executed: 25 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076012');
Date: 2024-06-26 09:43:55 Duration: 9s538ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2073677');
Date: 2024-06-26 09:43:59 Duration: 9s161ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2072917');
Date: 2024-06-26 09:23:55 Duration: 8s807ms Bind query: yes
4 78 1m40s 1s221ms 1s417ms 1s287ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 26 00 1 1s324ms 1s324ms 01 2 2s592ms 1s296ms 02 4 5s155ms 1s288ms 03 4 5s244ms 1s311ms 04 3 3s907ms 1s302ms 05 7 9s135ms 1s305ms 06 3 3s879ms 1s293ms 07 4 5s238ms 1s309ms 08 2 2s627ms 1s313ms 10 5 6s278ms 1s255ms 11 3 3s877ms 1s292ms 12 3 3s857ms 1s285ms 13 3 3s904ms 1s301ms 14 2 2s561ms 1s280ms 15 2 2s608ms 1s304ms 16 1 1s307ms 1s307ms 17 4 5s148ms 1s287ms 18 3 3s750ms 1s250ms 19 1 1s265ms 1s265ms 20 3 3s864ms 1s288ms 21 2 2s520ms 1s260ms 22 10 12s703ms 1s270ms 23 6 7s702ms 1s283ms [ User: pubeu - Total duration: 33s727ms - Times executed: 26 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1210114') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1210114') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 05:38:35 Duration: 1s417ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1210114') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1210114') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 05:43:38 Duration: 1s406ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221440') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1221440') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 13:56:07 Duration: 1s367ms Database: ctdprd51 User: pubeu Bind query: yes
5 61 2m31s 1s22ms 7s927ms 2s486ms select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where diseaseterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 26 09 45 1m57s 2s602ms 21 16 34s593ms 2s162ms [ User: pubeu - Total duration: 1m15s - Times executed: 27 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2073677') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 09:43:56 Duration: 7s927ms Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2068897') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 21:26:52 Duration: 7s784ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE diseaseTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '2068897') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 09:43:49 Duration: 7s44ms Bind query: yes
6 60 2m18s 1s50ms 7s984ms 2s300ms select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 26 09 47 1m51s 2s368ms 21 13 26s714ms 2s54ms [ User: pubeu - Total duration: 27s965ms - Times executed: 12 ]
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2068897') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-06-26 09:43:58 Duration: 7s984ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080955') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-06-26 09:43:47 Duration: 5s574ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080955') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2024-06-26 21:26:39 Duration: 5s25ms Bind query: yes
7 60 1m28s 1s217ms 2s889ms 1s480ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 26 01 3 4s45ms 1s348ms 03 2 2s571ms 1s285ms 05 3 4s213ms 1s404ms 07 1 1s246ms 1s246ms 09 16 23s826ms 1s489ms 10 2 2s556ms 1s278ms 11 2 2s608ms 1s304ms 12 1 1s317ms 1s317ms 15 2 2s612ms 1s306ms 16 2 2s671ms 1s335ms 18 1 1s305ms 1s305ms 20 2 2s438ms 1s219ms 21 20 33s523ms 1s676ms 22 2 2s581ms 1s290ms 23 1 1s295ms 1s295ms [ User: pubeu - Total duration: 22s245ms - Times executed: 15 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2078909') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2078909') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 09:35:36 Duration: 2s889ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2078909') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2078909') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 21:34:11 Duration: 2s630ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = '2068611') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2068611') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2024-06-26 21:34:52 Duration: 2s603ms Database: ctdprd51 User: pubeu Bind query: yes
8 51 3m58s 1s 7s763ms 4s678ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 26 02 1 5s546ms 5s546ms 03 1 5s209ms 5s209ms 05 1 4s931ms 4s931ms 06 2 6s405ms 3s202ms 08 1 5s445ms 5s445ms 09 13 1m10s 5s384ms 11 3 10s801ms 3s600ms 12 3 11s769ms 3s923ms 13 3 16s545ms 5s515ms 14 3 7s639ms 2s546ms 15 1 4s814ms 4s814ms 16 2 10s762ms 5s381ms 18 2 6s143ms 3s71ms 20 2 6s892ms 3s446ms 21 11 57s553ms 5s232ms 22 2 8s128ms 4s64ms [ User: pubeu - Total duration: 57s935ms - Times executed: 14 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1254557' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 09:25:05 Duration: 7s763ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1408637' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 22:46:49 Duration: 7s66ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1319639' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 21:33:01 Duration: 6s612ms Bind query: yes
9 48 1m56s 1s37ms 7s334ms 2s429ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 26 09 24 1m3s 2s648ms 11 1 1s318ms 1s318ms 15 1 1s325ms 1s325ms 16 1 2s872ms 2s872ms 21 21 47s557ms 2s264ms [ User: pubeu - Total duration: 24s913ms - Times executed: 10 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-26 09:25:05 Duration: 7s334ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-26 21:30:08 Duration: 5s635ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1387245') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-26 09:34:44 Duration: 5s484ms Bind query: yes
10 40 55s586ms 1s327ms 1s517ms 1s389ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 26 03 2 2s772ms 1s386ms 04 1 1s327ms 1s327ms 05 2 2s819ms 1s409ms 09 25 34s591ms 1s383ms 10 1 1s393ms 1s393ms 11 1 1s392ms 1s392ms 12 1 1s412ms 1s412ms 17 1 1s429ms 1s429ms 19 3 4s184ms 1s394ms 21 2 2s886ms 1s443ms 22 1 1s375ms 1s375ms [ User: pubeu - Total duration: 13s900ms - Times executed: 10 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'M' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-06-26 09:22:30 Duration: 1s517ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'H' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-06-26 09:22:14 Duration: 1s498ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2024-06-26 21:25:52 Duration: 1s462ms Bind query: yes
11 33 23m17s 1s385ms 6m27s 42s356ms select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 26 17 6 1m7s 11s193ms 20 6 14m28s 2m24s 21 14 4m 17s204ms 22 4 3m18s 49s702ms 23 3 22s751ms 7s583ms [ User: load - Total duration: 12m53s - Times executed: 17 ]
[ Application: pg_bulkload - Total duration: 12m53s - Times executed: 17 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-06-26 20:11:16 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-06-26 20:38:46 Duration: 5m12s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-06-26 22:27:50 Duration: 2m54s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
12 29 1m13s 1s28ms 7s279ms 2s551ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 26 09 17 45s329ms 2s666ms 21 12 28s660ms 2s388ms [ User: pubeu - Total duration: 19s923ms - Times executed: 8 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1387245'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-06-26 09:25:08 Duration: 7s279ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1387245'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-06-26 09:34:51 Duration: 6s483ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1387245'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-06-26 21:30:04 Duration: 6s318ms Bind query: yes
13 29 50s757ms 1s17ms 3s67ms 1s750ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term disease, exp_outcome o1 where disease.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and disease.id = o1.disease_id and o1.id = e1.exp_outcome_id union select reference_id from exposure e1, term t, exp_receptor r where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = r.term_id and r.id = e1.exp_receptor_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 26 09 22 39s546ms 1s797ms 21 7 11s210ms 1s601ms [ User: pubeu - Total duration: 32s373ms - Times executed: 18 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term disease, exp_outcome o1 where disease.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2070561') and disease.id = o1.disease_id and o1.id = e1.exp_outcome_id UNION select reference_id from exposure e1, term t, exp_receptor r where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2070561') and t.id = r.term_id and r.id = e1.exp_receptor_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-26 09:43:53 Duration: 3s67ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term disease, exp_outcome o1 where disease.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2080955') and disease.id = o1.disease_id and o1.id = e1.exp_outcome_id UNION select reference_id from exposure e1, term t, exp_receptor r where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2080955') and t.id = r.term_id and r.id = e1.exp_receptor_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-26 09:43:49 Duration: 3s38ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term disease, exp_outcome o1 where disease.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2070561') and disease.id = o1.disease_id and o1.id = e1.exp_outcome_id UNION select reference_id from exposure e1, term t, exp_receptor r where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '2070561') and t.id = r.term_id and r.id = e1.exp_receptor_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2024-06-26 09:23:51 Duration: 2s979ms Database: ctdprd51 User: pubeu Bind query: yes
14 27 1m46s 3s833ms 4s134ms 3s930ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 26 01 2 7s913ms 3s956ms 02 1 3s883ms 3s883ms 03 3 11s831ms 3s943ms 05 2 7s789ms 3s894ms 07 2 7s776ms 3s888ms 08 5 19s705ms 3s941ms 09 3 11s943ms 3s981ms 10 1 3s921ms 3s921ms 12 1 3s833ms 3s833ms 13 2 7s842ms 3s921ms 15 2 7s876ms 3s938ms 18 2 7s926ms 3s963ms 23 1 3s894ms 3s894ms [ User: pubeu - Total duration: 31s585ms - Times executed: 8 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1207072') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1207072') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-06-26 08:18:25 Duration: 4s134ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1334917') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1334917') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-06-26 03:16:46 Duration: 4s7ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1425171') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1425171') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-06-26 09:55:55 Duration: 3s992ms Bind query: yes
15 23 50s821ms 1s812ms 4s506ms 2s209ms select r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refacc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, count(*) over () fullrowcount from reference r where r.id in ( select reference_id from term_reference where term_id in (...)) order by r.sort_txt limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 26 09 13 28s15ms 2s155ms 21 10 22s806ms 2s280ms [ User: pubeu - Total duration: 14s64ms - Times executed: 6 ]
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ('1431620')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-06-26 09:43:59 Duration: 4s506ms Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ('1431600')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-06-26 21:32:41 Duration: 3s440ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* RefsDAO */ r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.acc_txt refAcc, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.has_exposures, COUNT(*) OVER () fullRowCount FROM reference r WHERE r.id IN ( select reference_id from term_reference where term_id in ('2026509')) ORDER BY r.sort_txt LIMIT 50;
Date: 2024-06-26 21:26:18 Duration: 2s658ms Database: ctdprd51 User: pubeu Bind query: yes
16 22 31s222ms 1s316ms 2s166ms 1s419ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 26 05 2 2s674ms 1s337ms 09 10 13s358ms 1s335ms 16 1 1s334ms 1s334ms 17 1 1s424ms 1s424ms 21 6 8s917ms 1s486ms 23 2 3s513ms 1s756ms [ User: pubeu - Total duration: 6s610ms - Times executed: 4 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-06-26 23:18:57 Duration: 2s166ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-06-26 21:26:16 Duration: 1s792ms Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2024-06-26 21:26:16 Duration: 1s742ms Database: ctdprd51 User: pubeu Bind query: yes
17 21 14m13s 2s365ms 10m22s 40s656ms select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 26 18 21 14m13s 40s656ms [ User: load - Total duration: 10m22s - Times executed: 1 ]
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:03:30 Duration: 10m22s Database: ctdprd51 User: load Bind query: yes
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:20:14 Duration: 50s352ms Bind query: yes
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:25:40 Duration: 47s792ms Bind query: yes
18 21 5m6s 1s11ms 47s624ms 14s583ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 26 06 1 1s15ms 1s15ms 09 10 2m23s 14s317ms 19 1 1s78ms 1s78ms 21 6 1m7s 11s239ms 23 3 1m33s 31s183ms [ User: pubeu - Total duration: 2m47s - Times executed: 10 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 23:45:55 Duration: 47s624ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 23:45:55 Duration: 44s912ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 09:35:44 Duration: 26s295ms Bind query: yes
19 15 22s752ms 1s93ms 1s854ms 1s516ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 26 06 1 1s478ms 1s478ms 10 5 8s8ms 1s601ms 11 4 6s284ms 1s571ms 13 2 2s672ms 1s336ms 18 1 1s163ms 1s163ms 19 1 1s593ms 1s593ms 22 1 1s552ms 1s552ms [ User: pubeu - Total duration: 10s798ms - Times executed: 7 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2071327') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-06-26 10:57:37 Duration: 1s854ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2071327') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-06-26 11:00:11 Duration: 1s616ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2071327') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2024-06-26 10:57:20 Duration: 1s605ms Database: ctdprd51 User: pubeu Bind query: yes
20 14 31s266ms 1s7ms 7s297ms 2s233ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.ixn_id = any (array (( select ixn_id from ixn_anatomy where anatomy_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?)))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 26 09 13 30s203ms 2s323ms 22 1 1s63ms 1s63ms [ User: pubeu - Total duration: 10s250ms - Times executed: 3 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2085729')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-06-26 09:44:56 Duration: 7s297ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2085729')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-06-26 09:39:46 Duration: 7s164ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2086010')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2024-06-26 09:44:50 Duration: 1s777ms Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 39m27s 39m27s 39m27s 1 39m27s select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.gene_go_annot gga, pub2.phenotype_term_reference ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 26 20 1 39m27s 39m27s -
select distinct gga.go_term_id, gcr.chem_id, ptr.term_object_type_id, gga.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.GENE_GO_ANNOT gga, pub2.PHENOTYPE_TERM_REFERENCE ptr where gcr.gene_id = gga.gene_id and gcr.chem_id = ptr.term_id and gga.go_term_id = ptr.phenotype_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 20:00:13 Duration: 39m27s Bind query: yes
2 37m12s 37m12s 37m12s 1 37m12s select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.object_type where cd = ?), ptr.term_id, ( select id from pub2.object_type where cd = ?), ( select current_date) from pub2.gene_chem_reference gcr, pub2.phenotype_term_reference ptr, pub2.phenotype_term_reference ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 26 19 1 37m12s 37m12s -
select distinct ptr.phenotype_id, gcr.gene_id, ( select id from pub2.OBJECT_TYPE where cd = 'gene'), ptr.term_id, ( select id from pub2.OBJECT_TYPE where cd = 'chem'), ( select current_date) from pub2.GENE_CHEM_REFERENCE gcr, pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.PHENOTYPE_TERM_REFERENCE ptr2 where gcr.chem_id = ptr.term_id and ptr.phenotype_id = ptr2.phenotype_id and gcr.gene_id = ptr2.term_id and gcr.id not in ( select gene_chem_reference_id from pub2.GENE_CHEM_REFERENCE_AXN where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 19:20:40 Duration: 37m12s Bind query: yes
3 34m16s 34m16s 34m16s 1 34m16s select i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) from edit.ixn i, edit.reference_ixn r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in (...) order by i.id asc;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 26 17 1 34m16s 34m16s -
SELECT i.id, edit.get_ixn_xml (i.id), edit.get_ixn_prose (i.id), edit.get_ixn_delimited_actions (i.id), i.ixn_type_id, r.reference_acc_txt, r.taxon_acc_txt, r.create_by, common.break_html_words (edit.get_ixn_prose_html (i.id), false) FROM edit.IXN i, edit.REFERENCE_IXN r where i.id = i.root_id and i.id = r.ixn_id and r.create_by not in ('bogusName') order by i.id asc;
Date: 2024-06-26 17:50:22 Duration: 34m16s Bind query: yes
4 23m36s 23m36s 23m36s 1 23m36s update pub2.gene_disease gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.gene_disease_reference gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.reference r where has_exposures = true));Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 26 23 1 23m36s 23m36s -
update pub2.GENE_DISEASE gd set exposure_reference_qty = ( select count(distinct reference_id) from pub2.GENE_DISEASE_REFERENCE gdr where gd.gene_id = gdr.gene_id and gd.disease_id = gdr.disease_id and reference_id in ( select id from pub2.REFERENCE r where has_exposures = true));
Date: 2024-06-26 23:31:10 Duration: 23m36s Bind query: yes
5 23m22s 23m22s 23m22s 1 23m22s insert into pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.gene_go_annot;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 26 17 1 23m22s 23m22s -
insert into pub2.GENE_GO_ANNOT (gene_id, go_term_id, taxon_id, evidence_cd, is_not) select gene_id, go_term_id, taxon_id, evidence_cd, is_not from load.GENE_GO_ANNOT;
Date: 2024-06-26 17:07:59 Duration: 23m22s Bind query: yes
6 16m16s 16m16s 16m16s 1 16m16s select maint_query_logs_archive ();Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 26 00 1 16m16s 16m16s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2024-06-26 00:16:18 Duration: 16m16s
7 12m23s 12m23s 12m23s 1 12m23s alter table pub2.term_enrichment_agent add constraint term_enr_agent_term_enr_fk foreign key (term_id, enriched_term_id) references term_enrichment (term_id, enriched_term_id);Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 26 22 1 12m23s 12m23s -
ALTER TABLE pub2.term_enrichment_agent ADD CONSTRAINT term_enr_agent_term_enr_fk FOREIGN KEY (term_id, enriched_term_id) REFERENCES term_enrichment (term_id, enriched_term_id);
Date: 2024-06-26 22:43:07 Duration: 12m23s Bind query: yes
8 11m25s 11m25s 11m25s 1 11m25s insert into pub2.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.db_link;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 26 16 1 11m25s 11m25s [ User: pub2 - Total duration: 11m25s - Times executed: 1 ]
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insert into pub2.DB_LINK (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary) select object_id, object_type_id, acc_txt, db_id, type_cd, is_primary from edit.DB_LINK;
Date: 2024-06-26 16:39:16 Duration: 11m25s Database: ctdprd51 User: pub2 Bind query: yes
9 10m10s 10m10s 10m10s 1 10m10s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.gene_id = any (array (( select gi.id gene_id from term gi where gi.object_type_id = ? and upper(gi.nm) like ?) intersect ( select ai.gene_id from dag_path pi inner join gene_go_annot ai on pi.descendant_object_id = ai.go_term_id inner join db_link dbli on dbli.object_id = pi.ancestor_object_id where dbli.acc_txt = ? and dbli.type_cd = ? and dbli.object_type_id = ?) intersect ( select tp.term_id from term_pathway tp where tp.object_type_id = ? and upper(tp.pathway_acc_txt) = ? and tp.pathway_acc_db_cd = ?))) and gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 26 13 1 10m10s 10m10s [ User: pubeu - Total duration: 10m10s - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Name */ gi.id gene_id FROM term gi WHERE gi.object_type_id = 4 AND UPPER(gi.nm) LIKE 'CCNA2') INTERSECT ( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN db_link dbli ON dbli.object_id = pi.ancestor_object_id WHERE dbli.acc_txt = 'GO:0008150' AND dbli.type_cd = 'A' AND dbli.object_type_id = 5) INTERSECT ( SELECT /* IQH.getMasterPathwayWhereEquals.Acc */ tp.term_id FROM term_pathway tp WHERE tp.object_type_id = 4 AND UPPER(tp.pathway_acc_txt) = 'HSA04110' AND tp.pathway_acc_db_cd = 'KEGG'))) AND gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2024-06-26 13:59:58 Duration: 10m10s Database: ctdprd51 User: pubeu Bind query: yes
10 2s55ms 17m44s 6m40s 13 1h26m49s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 26 02 1 2s55ms 2s55ms 06 1 3m37s 3m37s 09 5 35m48s 7m9s 10 1 17m28s 17m28s 14 1 2m25s 2m25s 21 3 26m6s 8m42s 22 1 1m20s 1m20s [ User: pubeu - Total duration: 20m29s - Times executed: 5 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 09:53:01 Duration: 17m44s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 10:00:17 Duration: 17m28s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1233923') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2024-06-26 21:49:51 Duration: 17m21s Bind query: yes
11 4m38s 5m17s 4m58s 2 9m56s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by referencecount desc limit ? offset ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 26 00 2 9m56s 4m58s [ User: pubeu - Total duration: 9m56s - Times executed: 2 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50 OFFSET 50;
Date: 2024-06-26 00:30:46 Duration: 5m17s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50 OFFSET 50;
Date: 2024-06-26 00:28:26 Duration: 4m38s Database: ctdprd51 User: pubeu Bind query: yes
12 4m32s 4m32s 4m32s 1 4m32s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by referencecount desc limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 26 00 1 4m32s 4m32s [ User: pubeu - Total duration: 4m32s - Times executed: 1 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY referenceCount DESC LIMIT 50;
Date: 2024-06-26 00:17:39 Duration: 4m32s Database: ctdprd51 User: pubeu Bind query: yes
13 1s413ms 4m36s 2m18s 2 4m37s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ? offset ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 26 00 1 4m36s 4m36s 02 1 1s413ms 1s413ms [ User: pubeu - Total duration: 4m36s - Times executed: 1 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1229069') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 150;
Date: 2024-06-26 00:14:43 Duration: 4m36s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1236554') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50 OFFSET 184300;
Date: 2024-06-26 02:29:24 Duration: 1s413ms Bind query: yes
14 1s385ms 6m27s 42s356ms 33 23m17s select * from pgbulkload.pg_bulkload (?);Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 26 17 6 1m7s 11s193ms 20 6 14m28s 2m24s 21 14 4m 17s204ms 22 4 3m18s 49s702ms 23 3 22s751ms 7s583ms [ User: load - Total duration: 12m53s - Times executed: 17 ]
[ Application: pg_bulkload - Total duration: 12m53s - Times executed: 17 ]
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.GENE_DISEASE_REFERENCE,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.log,parse-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/indirectAssociation/geneDiseaseRef.txt.DUPE}');
Date: 2024-06-26 20:11:16 Duration: 6m27s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.DAG_PATH,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.log,parse-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/dag/dagPath.txt.DUPE}');
Date: 2024-06-26 20:38:46 Duration: 5m12s Bind query: yes
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SELECT * FROM pgbulkload.pg_bulkload ('{TABLE=pub2.TERM_ENRICHMENT_AGENT,TYPE=CSV,DELIMITER=|,"ESCAPE=\\",PARSE_ERRORS=0,DUPLICATE_ERRORS=0,OFFSET=1,VERBOSE=true,infile=stdin,logfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.log,parse-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.BAD,duplicate-badfile=/home/load/ctdLoadData/pub/goEnrichment/enrichedTermAgent.txt.DUPE}');
Date: 2024-06-26 22:27:50 Duration: 2m54s Database: ctdprd51 User: load Application: pg_bulkload Bind query: yes
15 2s365ms 10m22s 40s656ms 21 14m13s select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, to_char(cdr.mod_tm, ?) from pub2.gene_chem_reference gcr, pub2.chem_disease_reference cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = ? and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = ?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 26 18 21 14m13s 40s656ms [ User: load - Total duration: 10m22s - Times executed: 1 ]
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:03:30 Duration: 10m22s Database: ctdprd51 User: load Bind query: yes
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:20:14 Duration: 50s352ms Bind query: yes
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select distinct gcr.gene_id, cdr.disease_id, cdr.reference_id, cdr.chem_id as via_chem_id, cdr.ixn_id, TO_CHAR(cdr.mod_tm, 'YYYY-MM-DD') from pub2.GENE_CHEM_REFERENCE gcr, pub2.CHEM_DISEASE_REFERENCE cdr where gcr.chem_id = cdr.chem_id and cdr.source_cd = 'C' and gcr.id not in ( select gene_chem_reference_id from pub2.gene_chem_reference_axn where action_degree_type_nm = 'does not affect');
Date: 2024-06-26 18:25:40 Duration: 47s792ms Bind query: yes
16 1s11ms 47s624ms 14s583ms 21 5m6s select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 26 06 1 1s15ms 1s15ms 09 10 2m23s 14s317ms 19 1 1s78ms 1s78ms 21 6 1m7s 11s239ms 23 3 1m33s 31s183ms [ User: pubeu - Total duration: 2m47s - Times executed: 10 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 23:45:55 Duration: 47s624ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 23:45:55 Duration: 44s912ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1210111') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2024-06-26 09:35:44 Duration: 26s295ms Bind query: yes
17 1s58ms 22s236ms 6s188ms 167 17m13s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 26 00 1 2s389ms 2s389ms 02 1 1s108ms 1s108ms 09 114 12m41s 6s682ms 10 2 4s946ms 2s473ms 15 1 1s383ms 1s383ms 19 1 2s231ms 2s231ms 21 45 4m15s 5s672ms 22 2 4s437ms 2s218ms [ User: pubeu - Total duration: 6m27s - Times executed: 60 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2074152') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:08 Duration: 22s236ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2080955') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:07 Duration: 21s513ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2068897') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2024-06-26 09:44:00 Duration: 20s678ms Bind query: yes
18 1s 7s763ms 4s678ms 51 3m58s select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 26 02 1 5s546ms 5s546ms 03 1 5s209ms 5s209ms 05 1 4s931ms 4s931ms 06 2 6s405ms 3s202ms 08 1 5s445ms 5s445ms 09 13 1m10s 5s384ms 11 3 10s801ms 3s600ms 12 3 11s769ms 3s923ms 13 3 16s545ms 5s515ms 14 3 7s639ms 2s546ms 15 1 4s814ms 4s814ms 16 2 10s762ms 5s381ms 18 2 6s143ms 3s71ms 20 2 6s892ms 3s446ms 21 11 57s553ms 5s232ms 22 2 8s128ms 4s64ms [ User: pubeu - Total duration: 57s935ms - Times executed: 14 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1254557' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 09:25:05 Duration: 7s763ms Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1408637' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 22:46:49 Duration: 7s66ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1319639' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2024-06-26 21:33:01 Duration: 6s612ms Bind query: yes
19 3s833ms 4s134ms 3s930ms 27 1m46s select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 26 01 2 7s913ms 3s956ms 02 1 3s883ms 3s883ms 03 3 11s831ms 3s943ms 05 2 7s789ms 3s894ms 07 2 7s776ms 3s888ms 08 5 19s705ms 3s941ms 09 3 11s943ms 3s981ms 10 1 3s921ms 3s921ms 12 1 3s833ms 3s833ms 13 2 7s842ms 3s921ms 15 2 7s876ms 3s938ms 18 2 7s926ms 3s963ms 23 1 3s894ms 3s894ms [ User: pubeu - Total duration: 31s585ms - Times executed: 8 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1207072') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1207072') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-06-26 08:18:25 Duration: 4s134ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1334917') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1334917') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-06-26 03:16:46 Duration: 4s7ms Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1425171') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1425171') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2024-06-26 09:55:55 Duration: 3s992ms Bind query: yes
20 1s2ms 9s538ms 2s809ms 149 6m58s select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 26 09 101 5m24s 3s211ms 21 48 1m34s 1s961ms [ User: pubeu - Total duration: 1m2s - Times executed: 25 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2076012');
Date: 2024-06-26 09:43:55 Duration: 9s538ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2073677');
Date: 2024-06-26 09:43:59 Duration: 9s161ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2072917');
Date: 2024-06-26 09:23:55 Duration: 8s807ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 2s153ms 2 1s18ms 1s135ms 1s76ms SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' ||;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Jun 26 09 1 1s18ms 1s18ms 21 1 1s135ms 1s135ms -
SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' ||;
Date: 2024-06-26 21:26:34 Duration: 1s135ms Database: postgres parameters: $1 = '2072917', $2 = '2072917'
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' ||;
Date: 2024-06-26 09:43:45 Duration: 1s18ms Database: postgres parameters: $1 = '2074152'
2 1s820ms 1 1s820ms 1s820ms 1s820ms select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.IXN_AXN i where ptr.ixn_id = i.ixn_id;Times Reported Time consuming bind #2
Day Hour Count Duration Avg duration 22 1 1s820ms 1s820ms -
select distinct ptr.phenotype_id, ptr.term_id, i.action_type_nm, i.action_type_cd, i.action_degree_type_nm, i.action_degree_type_cd from pub2.PHENOTYPE_TERM_REFERENCE ptr, pub2.IXN_AXN i where ptr.ixn_id = i.ixn_id;
Date: 2024-06-26 23:00:42 Duration: 1s820ms Database: postgres
3 0ms 12 0ms 0ms 0ms ;Times Reported Time consuming bind #3
Day Hour Count Duration Avg duration Jun 25 09 4 0ms 0ms 10 2 0ms 0ms 13 1 0ms 0ms 17 1 0ms 0ms Jun 26 08 1 0ms 0ms 09 3 0ms 0ms [ User: pubeu - Total duration: 13s157ms - Times executed: 6 ]
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;
Date: Duration: 0ms Database: postgres parameters: $1 = '2068897'
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Events
Log levels
Key values
- 14,625 Log entries
Events distribution
Key values
- 0 PANIC entries
- 3 FATAL entries
- 11 ERROR entries
- 0 WARNING entries
Most Frequent Errors/Events
Key values
- 4 Max number of times the same event was reported
- 14 Total events found
Rank Times reported Error 1 4 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #1
Day Hour Count Jun 26 10 1 12 1 13 1 20 1 2 3 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #2
Day Hour Count Jun 26 09 1 10 1 21 1 3 3 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #3
Day Hour Count Jun 26 09 1 10 1 21 1 4 2 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #4
Day Hour Count Jun 26 10 2 5 1 ERROR: function get_ixn_prose(...) does not exist
Times Reported Most Frequent Error / Event #5
Day Hour Count Jun 26 10 1 - ERROR: function get_ixn_prose(integer) does not exist at character 66
Hint: No function matches the given name and argument types. You might need to add explicit type casts.
Statement: select reference_acc_txt ,taxon_acc_txt ,pubTerm.nm ,get_ixn_prose( ixn_id ) ,create_by ,create_tm from edit.reference_ixn ri ,pub1.term pubTerm where taxon_acc_txt not in ( select acc_txt from load.term where object_type_id = ( select id from edit.object_type where cd = 'taxon' ) ) and pubTerm.acc_txt = ri.taxon_acc_txt and object_type_id = ( select id from edit.object_type where cd = 'taxon' ) and taxon_acc_txt is not null and taxon_acc_txt <> ''Date: 2024-06-26 10:45:59 Database: ctdprd51 Application: pgAdmin 4 - CONN:3182627 User: load Remote:
6 1 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #6
Day Hour Count Jun 26 10 1 - ERROR: syntax error at or near "d" at character 1
Statement: d DESC LIMIT 100
Date: 2024-06-26 10:56:27 Database: ctdprd51 Application: pgAdmin 4 - CONN:1759786 User: editeu Remote: