1
109
Details
2m5s
1s50ms
1s230ms
1s149ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
exposuremarkerterm.id = ?
or receptorterm.id = ?
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #1
Day
Hour
Count
Duration
Avg duration
Sep 07 00 9 10s270ms 1s141ms 01 3 3s475ms 1s158ms 02 1 1s103ms 1s103ms 03 6 6s984ms 1s164ms 04 8 9s248ms 1s156ms 05 3 3s533ms 1s177ms 06 3 3s525ms 1s175ms 07 8 9s223ms 1s152ms 08 2 2s288ms 1s144ms 09 3 3s461ms 1s153ms 10 8 9s184ms 1s148ms 11 5 5s727ms 1s145ms 12 4 4s489ms 1s122ms 13 4 4s608ms 1s152ms 14 3 3s430ms 1s143ms 15 2 2s371ms 1s185ms 16 3 3s439ms 1s146ms 17 7 8s83ms 1s154ms 18 3 3s461ms 1s153ms 19 4 4s579ms 1s144ms 20 8 8s822ms 1s102ms 21 4 4s480ms 1s120ms 23 8 9s542ms 1s192ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1m14s - Times executed: 65 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '2026979'
or receptorTerm.id = '2026979'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 23:09:33
Duration: 1s230ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1437597'
or receptorTerm.id = '1437597'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 05:38:41
Duration: 1s226ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1858465'
or receptorTerm.id = '1858465'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 23:10:55
Duration: 1s210ms
Bind query: yes
x Hide
2
27
Details
1m47s
3s834ms
4s582ms
3s995ms
select
coalesce ( st.alt_nm, t.nm) slimtermnm,
(
select
count ( * )
from
slim_term_mapping stm
inner join chem_disease cd on cd.disease_id = stm.mapped_term_id
where
cd.chem_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
and stm.slim_term_id = st.slim_term_id
and cd.curated_reference_qty > ?) curatedcount,
(
select
count ( * )
from
slim_term_mapping stm
inner join chem_disease cd on cd.disease_id = stm.mapped_term_id
where
cd.chem_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
and stm.slim_term_id = st.slim_term_id
and cd.indirect_gene_qty > ?) inferredcount
from
slim_term st
inner join term t on st.slim_term_id = t.id
where
st.slim_id = ?
order by
?;
Times Reported Time consuming queries #2
Day
Hour
Count
Duration
Avg duration
Sep 07 00 1 4s12ms 4s12ms 02 3 11s819ms 3s939ms 03 2 8s485ms 4s242ms 04 4 15s796ms 3s949ms 05 1 4s556ms 4s556ms 06 5 19s735ms 3s947ms 07 1 3s897ms 3s897ms 11 1 3s896ms 3s896ms 12 1 4s172ms 4s172ms 13 5 19s645ms 3s929ms 17 1 3s962ms 3s962ms 20 1 3s920ms 3s920ms 22 1 3s967ms 3s967ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 43s815ms - Times executed: 11 ]
x Hide
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1339057')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1339057')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-09-07 03:26:35
Duration: 4s582ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1338379')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1338379')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-09-07 05:44:15
Duration: 4s556ms
Bind query: yes
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1307347')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1307347')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-09-07 12:16:09
Duration: 4s172ms
Bind query: yes
x Hide
3
26
Details
32s649ms
1s119ms
1s392ms
1s255ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #3
Day
Hour
Count
Duration
Avg duration
Sep 07 00 3 3s675ms 1s225ms 01 2 2s526ms 1s263ms 03 1 1s255ms 1s255ms 04 1 1s297ms 1s297ms 05 2 2s649ms 1s324ms 07 1 1s227ms 1s227ms 09 3 3s801ms 1s267ms 11 1 1s261ms 1s261ms 12 2 2s500ms 1s250ms 14 1 1s215ms 1s215ms 16 1 1s274ms 1s274ms 18 1 1s238ms 1s238ms 19 2 2s367ms 1s183ms 21 2 2s347ms 1s173ms 22 1 1s296ms 1s296ms 23 2 2s714ms 1s357ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 27s600ms - Times executed: 22 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1214423')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1214423')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 23:08:08
Duration: 1s392ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1219369')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1219369')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 09:21:06
Duration: 1s333ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1216070')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1216070')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 05:43:41
Duration: 1s329ms
Bind query: yes
x Hide
4
14
Details
32s238ms
2s151ms
2s546ms
2s302ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort;
Times Reported Time consuming queries #4
Day
Hour
Count
Duration
Avg duration
Sep 07 01 3 6s874ms 2s291ms 02 2 4s433ms 2s216ms 03 9 20s930ms 2s325ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 6s642ms - Times executed: 3 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2080083')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort;
Date: 2024-09-07 03:11:52
Duration: 2s546ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2080083')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort;
Date: 2024-09-07 03:11:53
Duration: 2s533ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2080083')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort;
Date: 2024-09-07 03:11:54
Duration: 2s497ms
Bind query: yes
x Hide
5
13
Details
17s80ms
1s185ms
1s439ms
1s313ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #5
Day
Hour
Count
Duration
Avg duration
Sep 07 05 3 4s181ms 1s393ms 06 1 1s287ms 1s287ms 09 1 1s267ms 1s267ms 10 1 1s319ms 1s319ms 11 1 1s343ms 1s343ms 12 1 1s271ms 1s271ms 15 1 1s271ms 1s271ms 16 1 1s356ms 1s356ms 19 1 1s185ms 1s185ms 20 1 1s322ms 1s322ms 23 1 1s271ms 1s271ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 5s220ms - Times executed: 4 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2075714')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2075714')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 05:38:43
Duration: 1s439ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2075023')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2075023')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 05:35:45
Duration: 1s389ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2076451')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2076451')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-09-07 16:36:05
Duration: 1s356ms
Bind query: yes
x Hide
6
12
Details
21s486ms
1s63ms
2s991ms
1s790ms
select
? "Input",
chemicalname AS "ChemicalName",
chemicalid AS "ChemicalID",
casrn AS "CasRN",
phenotypename AS "PhenotypeName",
phenotypeid AS "PhenotypeID",
interaction AS "Interaction",
interactionactions AS "InteractionActions",
organismnameandid AS "OrganismName^ID",
anatomynameandidandseqnbr AS "AnatomyName^ID^SeqNbr",
inferencenetworkterms AS "InferenceNetworkTerms",
pubmedids AS "PubMedIDs"
from ( select distinct
associatedterm.nm as chemicalname,
associatedterm.acc_txt as chemicalid,
coalesce ( associatedterm.secondary_nm, ?) as casrn,
phenotypeterm.nm as phenotypename,
phenotypeterm.acc_txt as phenotypeid,
i.ixn_prose_txt as interaction,
i.actions_txt as interactionactions,
(
select
string_agg ( distinct taxonterm.nm || ? || taxonterm.acc_txt, ?) ) as organismnameandid,
(
select
string_agg ( distinct anatomyterm.nm || ? || anatomyterm.acc_txt || ? || ia.level_seq, ?) ) as anatomynameandidandseqnbr,
(
select
string_agg ( distinct r.acc_txt, ?) ) as pubmedids,
i.id,
(
select
string_agg ( distinct t.nm, ?)
from
phenotype_term_reference ptr2,
term t
where
ptr2.via_term_id = t.id
and ptr.phenotype_id = ptr2.phenotype_id
and ptr.term_id = ptr2.term_id
and ptr2.source_cd = ?) as inferencenetworkterms
from
phenotype_term_reference ptr
inner join term associatedterm on ptr.term_id = associatedterm.id
inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id
left outer join term taxonterm on ptr.taxon_id = taxonterm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id
where ( associatedterm.id = ?)
and ptr.source_cd = ?
and ptr.term_object_type_id = ?
group by
chemicalname,
chemicalid,
casrn,
phenotypename,
phenotypeid,
i.id,
interaction,
inferencenetworkterms) as baseline
order by
chemicalname,
phenotypename;
Times Reported Time consuming queries #6
Day
Hour
Count
Duration
Avg duration
Sep 07 11 8 13s752ms 1s719ms 12 4 7s734ms 1s933ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 6s339ms - Times executed: 3 ]
x Hide
select
'c006780' "Input",
ChemicalName as "ChemicalName",
ChemicalID as "ChemicalID",
CasRN as "CasRN",
PhenotypeName as "PhenotypeName",
PhenotypeID as "PhenotypeID",
Interaction as "Interaction",
InteractionActions as "InteractionActions",
OrganismNameAndID as "OrganismName^ID",
AnatomyNameAndIDAndSeqNbr as "AnatomyName^ID^SeqNbr",
InferenceNetworkTerms as "InferenceNetworkTerms",
PubMedIDs as "PubMedIDs"
from ( SELECT distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm AS ChemicalName,
associatedTerm.acc_txt as ChemicalID,
COALESCE ( associatedTerm.secondary_nm, '') AS CasRN,
phenotypeTerm.nm AS PhenotypeName,
phenotypeTerm.acc_txt AS PhenotypeID,
i.ixn_prose_txt AS Interaction,
i.actions_txt AS InteractionActions,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || taxonTerm.acc_txt, '|') ) AS OrganismNameAndID,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq, '|') ) AS AnatomyNameAndIDAndSeqNbr,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) AS PubMedIDs,
i.id,
(
SELECT
STRING_AGG ( distinct t.nm, '|')
from
phenotype_term_reference ptr2,
term t
where
ptr2.via_term_id = t.id
and ptr.phenotype_id = ptr2.phenotype_id
and ptr.term_id = ptr2.term_id
and ptr2.source_cd = 'I') AS InferenceNetworkTerms
from
phenotype_term_reference ptr
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
WHERE ( associatedTerm.id = 1260513 )
and ptr.source_cd = 'C'
and ptr.term_object_type_id = 2
group by
ChemicalName,
ChemicalID,
CasRN,
PhenotypeName,
PhenotypeID,
i.id,
Interaction,
InferenceNetworkTerms) as baseline
ORDER BY
ChemicalName,
PhenotypeName;
Date: 2024-09-07 11:47:38
Duration: 2s991ms
Bind query: yes
select
'c006780' "Input",
ChemicalName as "ChemicalName",
ChemicalID as "ChemicalID",
CasRN as "CasRN",
PhenotypeName as "PhenotypeName",
PhenotypeID as "PhenotypeID",
Interaction as "Interaction",
InteractionActions as "InteractionActions",
OrganismNameAndID as "OrganismName^ID",
AnatomyNameAndIDAndSeqNbr as "AnatomyName^ID^SeqNbr",
InferenceNetworkTerms as "InferenceNetworkTerms",
PubMedIDs as "PubMedIDs"
from ( SELECT distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm AS ChemicalName,
associatedTerm.acc_txt as ChemicalID,
COALESCE ( associatedTerm.secondary_nm, '') AS CasRN,
phenotypeTerm.nm AS PhenotypeName,
phenotypeTerm.acc_txt AS PhenotypeID,
i.ixn_prose_txt AS Interaction,
i.actions_txt AS InteractionActions,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || taxonTerm.acc_txt, '|') ) AS OrganismNameAndID,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq, '|') ) AS AnatomyNameAndIDAndSeqNbr,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) AS PubMedIDs,
i.id,
(
SELECT
STRING_AGG ( distinct t.nm, '|')
from
phenotype_term_reference ptr2,
term t
where
ptr2.via_term_id = t.id
and ptr.phenotype_id = ptr2.phenotype_id
and ptr.term_id = ptr2.term_id
and ptr2.source_cd = 'I') AS InferenceNetworkTerms
from
phenotype_term_reference ptr
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
WHERE ( associatedTerm.id = 1260513 )
and ptr.source_cd = 'C'
and ptr.term_object_type_id = 2
group by
ChemicalName,
ChemicalID,
CasRN,
PhenotypeName,
PhenotypeID,
i.id,
Interaction,
InferenceNetworkTerms) as baseline
ORDER BY
ChemicalName,
PhenotypeName;
Date: 2024-09-07 12:08:52
Duration: 2s925ms
Database: ctdprd51
User: pubeu
Bind query: yes
select
'd005978' "Input",
ChemicalName as "ChemicalName",
ChemicalID as "ChemicalID",
CasRN as "CasRN",
PhenotypeName as "PhenotypeName",
PhenotypeID as "PhenotypeID",
Interaction as "Interaction",
InteractionActions as "InteractionActions",
OrganismNameAndID as "OrganismName^ID",
AnatomyNameAndIDAndSeqNbr as "AnatomyName^ID^SeqNbr",
InferenceNetworkTerms as "InferenceNetworkTerms",
PubMedIDs as "PubMedIDs"
from ( SELECT distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm AS ChemicalName,
associatedTerm.acc_txt as ChemicalID,
COALESCE ( associatedTerm.secondary_nm, '') AS CasRN,
phenotypeTerm.nm AS PhenotypeName,
phenotypeTerm.acc_txt AS PhenotypeID,
i.ixn_prose_txt AS Interaction,
i.actions_txt AS InteractionActions,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || taxonTerm.acc_txt, '|') ) AS OrganismNameAndID,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq, '|') ) AS AnatomyNameAndIDAndSeqNbr,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) AS PubMedIDs,
i.id,
(
SELECT
STRING_AGG ( distinct t.nm, '|')
from
phenotype_term_reference ptr2,
term t
where
ptr2.via_term_id = t.id
and ptr.phenotype_id = ptr2.phenotype_id
and ptr.term_id = ptr2.term_id
and ptr2.source_cd = 'I') AS InferenceNetworkTerms
from
phenotype_term_reference ptr
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
WHERE ( associatedTerm.id = 1265366 )
and ptr.source_cd = 'C'
and ptr.term_object_type_id = 2
group by
ChemicalName,
ChemicalID,
CasRN,
PhenotypeName,
PhenotypeID,
i.id,
Interaction,
InferenceNetworkTerms) as baseline
ORDER BY
ChemicalName,
PhenotypeName;
Date: 2024-09-07 11:51:50
Duration: 2s299ms
Bind query: yes
x Hide
7
11
Details
30s564ms
1s36ms
10s872ms
2s778ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort
limit ? offset ?;
Times Reported Time consuming queries #7
Day
Hour
Count
Duration
Avg duration
Sep 07 01 6 11s473ms 1s912ms 02 1 1s895ms 1s895ms 04 1 2s658ms 2s658ms 07 1 2s628ms 2s628ms 11 1 1s36ms 1s36ms 21 1 10s872ms 10s872ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 7s503ms - Times executed: 4 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2076818')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 OFFSET 1912450 ;
Date: 2024-09-07 21:03:36
Duration: 10s872ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2074226')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 OFFSET 400500 ;
Date: 2024-09-07 04:22:07
Duration: 2s658ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2074226')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 OFFSET 400500 ;
Date: 2024-09-07 07:08:05
Duration: 2s628ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
8
8
Details
20s514ms
1s15ms
5s313ms
2s564ms
select
d.abbr dagabbr,
d.nm dagnm,
gt.level_min_no daglevelmin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pvalcorrected,
te.raw_p_val pvalraw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
count ( * ) over ( ) fullrowcount
from
term_enrichment te
inner join dag_node gt on te.enriched_term_id = gt.object_id
inner join dag d on gt.dag_id = d.id
where
te.term_id = ?
and te.enriched_object_type_id = ?
order by
te.corrected_p_val,
d.abbr,
gt.nm_sort
limit ?;
Times Reported Time consuming queries #8
Day
Hour
Count
Duration
Avg duration
Sep 07 02 1 1s42ms 1s42ms 05 1 1s21ms 1s21ms 10 1 1s28ms 1s28ms 11 1 5s13ms 5s13ms 16 2 10s343ms 5s171ms 22 1 1s49ms 1s49ms 23 1 1s15ms 1s15ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 15s201ms - Times executed: 7 ]
x Hide
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1294101'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-09-07 16:35:01
Duration: 5s313ms
Bind query: yes
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1294101'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-09-07 16:34:56
Duration: 5s30ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1407829'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-09-07 11:34:08
Duration: 5s13ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
9
6
Details
29s400ms
1s84ms
10s985ms
4s900ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort
limit ?;
Times Reported Time consuming queries #9
Day
Hour
Count
Duration
Avg duration
Sep 07 03 1 1s372ms 1s372ms 04 1 1s84ms 1s84ms 05 1 10s74ms 10s74ms 09 1 10s985ms 10s985ms 13 1 1s413ms 1s413ms 21 1 4s468ms 4s468ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 28s315ms - Times executed: 5 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2086129')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-09-07 09:11:52
Duration: 10s985ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2086129')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-09-07 05:59:53
Duration: 10s74ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2085868')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-09-07 21:59:37
Duration: 4s468ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
10
5
Details
7s63ms
1s371ms
1s491ms
1s412ms
select
t.nm,
t.nm_html nmhtml,
t.secondary_nm secondarynm,
t.acc_txt acc,
? || t.nm accquerystr,
t.has_chems haschems,
t.has_diseases hasdiseases,
t.has_exposures hasexposures,
t.has_phenotypes hasphenotypes,
count ( * ) over ( ) fullrowcount
from
term t
where
t.object_type_id = ?
and regexp_replace ( upper ( substring ( t.nm, ?, ?) ) , ?, ?) = ?
order by
t.nm_sort
limit ?;
Times Reported Time consuming queries #10
Day
Hour
Count
Duration
Avg duration
Sep 07 03 1 1s371ms 1s371ms 04 1 1s446ms 1s446ms 05 2 2s869ms 1s434ms 08 1 1s374ms 1s374ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 2s821ms - Times executed: 2 ]
x Hide
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-09-07 05:37:09
Duration: 1s491ms
Bind query: yes
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-09-07 04:44:44
Duration: 1s446ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-09-07 05:42:09
Duration: 1s378ms
Bind query: yes
x Hide
11
4
Details
32s214ms
8s10ms
8s106ms
8s53ms
select
ii.cd,
count ( ii.id) cnt
from (
select
ot.cd,
tl.term_id id
from
object_type ot
inner join term_label tl on ot.id = tl.object_type_id
where
tl.nm_fts @@ to_tsquery ( ?, ?)
union
select
?,
r.id
from
reference r
where
r.title_abstract_fts @@ to_tsquery ( ?, ?)
or r.id in (
select
rpr.reference_id
from
reference_party_role rpr
inner join reference_party rp on rpr.reference_party_id = rp.id
where ( substr ( get_reference_party_nm_sort ( rp.required_nm) , ?, ?)
like ?
or substr ( get_reference_party_nm_sort ( rp.required_nm) , ?, ?)
like ?) )
union
select
ot.cd,
l.object_id
from
db_link l
inner join object_type ot on l.object_type_id = ot.id
where
l.type_cd = ?
and ( upper ( l.acc_txt)
like ?
or upper ( l.acc_txt)
like ?) ) ii
group by
ii.cd;
Times Reported Time consuming queries #11
Day
Hour
Count
Duration
Avg duration
Sep 07 05 4 32s214ms 8s53ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 16s65ms - Times executed: 2 ]
x Hide
SELECT
/* BasicCountsDAO gen */
ii.cd,
COUNT ( ii.id) cnt
FROM (
SELECT
ot.cd,
tl.term_id id
FROM
object_type ot
INNER JOIN term_label tl ON ot.id = tl.object_type_id
WHERE
tl.nm_fts @@ to_tsquery ( 'common.english_nostops', 'CORCHOROSIDE & A_QT')
UNION
SELECT
'reference',
r.id
FROM
reference r
WHERE
r.title_abstract_fts @@ to_tsquery ( 'pg_catalog.english', 'CORCHOROSIDE & A_QT')
OR r.id IN (
SELECT
rpr.reference_id
FROM
reference_party_role rpr
INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id
WHERE ( SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'CORCHOROSIDE'
OR SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'A_QT') )
UNION
SELECT
ot.cd,
l.object_id
FROM
db_link l
INNER JOIN object_type ot on l.object_type_id = ot.id
WHERE
l.type_cd = 'A'
AND ( upper ( l.acc_txt)
LIKE 'CORCHOROSIDE'
OR upper ( l.acc_txt)
LIKE 'A_QT') ) ii
GROUP BY
ii.cd;
Date: 2024-09-07 05:51:11
Duration: 8s106ms
Bind query: yes
SELECT
/* BasicCountsDAO gen */
ii.cd,
COUNT ( ii.id) cnt
FROM (
SELECT
ot.cd,
tl.term_id id
FROM
object_type ot
INNER JOIN term_label tl ON ot.id = tl.object_type_id
WHERE
tl.nm_fts @@ to_tsquery ( 'common.english_nostops', 'CORCHOROSIDE & A_QT')
UNION
SELECT
'reference',
r.id
FROM
reference r
WHERE
r.title_abstract_fts @@ to_tsquery ( 'pg_catalog.english', 'CORCHOROSIDE & A_QT')
OR r.id IN (
SELECT
rpr.reference_id
FROM
reference_party_role rpr
INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id
WHERE ( SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'CORCHOROSIDE'
OR SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'A_QT') )
UNION
SELECT
ot.cd,
l.object_id
FROM
db_link l
INNER JOIN object_type ot on l.object_type_id = ot.id
WHERE
l.type_cd = 'A'
AND ( upper ( l.acc_txt)
LIKE 'CORCHOROSIDE'
OR upper ( l.acc_txt)
LIKE 'A_QT') ) ii
GROUP BY
ii.cd;
Date: 2024-09-07 05:53:19
Duration: 8s55ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* BasicCountsDAO gen */
ii.cd,
COUNT ( ii.id) cnt
FROM (
SELECT
ot.cd,
tl.term_id id
FROM
object_type ot
INNER JOIN term_label tl ON ot.id = tl.object_type_id
WHERE
tl.nm_fts @@ to_tsquery ( 'common.english_nostops', 'CORCHOROSIDE & A_QT')
UNION
SELECT
'reference',
r.id
FROM
reference r
WHERE
r.title_abstract_fts @@ to_tsquery ( 'pg_catalog.english', 'CORCHOROSIDE & A_QT')
OR r.id IN (
SELECT
rpr.reference_id
FROM
reference_party_role rpr
INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id
WHERE ( SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'CORCHOROSIDE'
OR SUBSTR ( get_reference_party_nm_sort ( rp.required_nm) , 1 , 128 )
LIKE 'A_QT') )
UNION
SELECT
ot.cd,
l.object_id
FROM
db_link l
INNER JOIN object_type ot on l.object_type_id = ot.id
WHERE
l.type_cd = 'A'
AND ( upper ( l.acc_txt)
LIKE 'CORCHOROSIDE'
OR upper ( l.acc_txt)
LIKE 'A_QT') ) ii
GROUP BY
ii.cd;
Date: 2024-09-07 05:51:15
Duration: 8s42ms
Bind query: yes
x Hide
12
4
Details
8s731ms
1s14ms
3s355ms
2s182ms
with recursive sub_node (
object_id,
id,
path,
lvl
) as (
select
n.object_id,
n.id,
array [n.nm_sort],
?
from
dag_node n
where
n.object_id = ?
union all
select
n.object_id,
n.id,
cast ( path || n.nm_sort as varchar ( ?) []) ,
sn.lvl + ?
from
dag_node n
inner join sub_node sn on ( n.parent_id = sn.id) )
select distinct
t.nm prinm,
t.nm_html prinmhtml,
t.secondary_nm secondarynm,
t.acc_db_cd accdbcd,
t.acc_txt termacc,
t.is_leaf isleaf,
t.has_chems haschems,
t.has_diseases hasdiseases,
t.has_exposures hasexposures,
t.has_genes hasgenes,
sn.lvl,
sn.path,
max ( sn.lvl) over ( ) maxlvl,
t.has_phenotypes hasphenotypes
from
sub_node sn
inner join term t on sn.object_id = t.id
where
sn.lvl <= ?
order by
sn.path;
Times Reported Time consuming queries #12
Day
Hour
Count
Duration
Avg duration
Sep 07 05 4 8s731ms 2s182ms
x Hide
Examples User(s) involved
[ User: qaeu - Total duration: 3s355ms - Times executed: 1 ]
[ User: pubeu - Total duration: 3s327ms - Times executed: 1 ]
x Hide
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '592227'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-09-07 05:40:12
Duration: 3s355ms
Database: ctdprd51
User: qaeu
Bind query: yes
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '592227'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-09-07 05:35:13
Duration: 3s327ms
Database: ctdprd51
User: pubeu
Bind query: yes
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '1437291'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-09-07 05:40:13
Duration: 1s34ms
Bind query: yes
x Hide
13
4
Details
5s558ms
1s380ms
1s397ms
1s389ms
select
coalesce ( d.abbr_display, d.nm_display) nm # ?,
d.description # ?,
coalesce ( d.abbr, d.nm) anchor # ?,
get_homepage_url ( d.id) url # ?
from
db d # ?
where
d.id in ( # ?
select
l.db_id # ? from db_link l # ?
where
l.type_cd = ? # ?
and l.object_type_id = ?) # ?
order by
?;
Times Reported Time consuming queries #13
Day
Hour
Count
Duration
Avg duration
Sep 07 05 2 2s789ms 1s394ms 09 2 2s768ms 1s384ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1s380ms - Times executed: 1 ]
x Hide
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-09-07 05:38:33
Duration: 1s397ms
Bind query: yes
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-09-07 05:43:34
Duration: 1s392ms
Bind query: yes
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-09-07 09:45:05
Duration: 1s388ms
Bind query: yes
x Hide
14
3
Details
24m33s
45s392ms
18m21s
8m11s
select
phenotypeterm.nm gonm,
phenotypeterm.nm_html gonmhtml,
phenotypeterm.acc_txt goacc,
phenotypeterm.id goid,
diseaseterm.nm diseasenm,
diseaseterm.acc_txt diseaseacc,
diseaseterm.acc_db_cd diseaseaccdbcd,
diseaseterm.id diseaseid,
via_gene_qty genenetworkcount,
via_chem_qty chemnetworkcount,
indirect_reference_qty referencecount,
count ( * ) over ( ) fullrowcount
from
phenotype_term pt
inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id
inner join term diseaseterm on pt.term_id = diseaseterm.id
where
phenotypeterm.id in ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id = ?)
and diseaseterm.object_type_id = ?
order by
chemnetworkcount desc ,
genenetworkcount desc
limit ?;
Times Reported Time consuming queries #14
Day
Hour
Count
Duration
Avg duration
Sep 07 02 2 23m48s 11m54s 12 1 45s392ms 45s392ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 23m48s - Times executed: 2 ]
x Hide
SELECT
/* GoDiseasesDAO */
phenotypeTerm.nm goNm,
phenotypeTerm.nm_html goNmHTML,
phenotypeTerm.acc_txt goAcc,
phenotypeTerm.id goId,
diseaseTerm.nm diseaseNm,
diseaseTerm.acc_txt diseaseAcc,
diseaseTerm.acc_db_cd diseaseAccDBCd,
diseaseTerm.id diseaseId,
via_gene_qty geneNetworkCount,
via_chem_qty chemNetworkCount,
indirect_reference_qty referenceCount,
COUNT ( * ) OVER ( ) fullRowCount
FROM
phenotype_term pt
inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id
inner join term diseaseTerm on pt.term_id = diseaseTerm.id
WHERE
phenotypeTerm.id IN ( select distinct
dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id = '1239879')
and diseaseTerm.object_type_id = 3
ORDER BY
chemNetworkCount desc ,
geneNetworkCount desc
LIMIT 50 ;
Date: 2024-09-07 02:17:54
Duration: 18m21s
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GoDiseasesDAO */
phenotypeTerm.nm goNm,
phenotypeTerm.nm_html goNmHTML,
phenotypeTerm.acc_txt goAcc,
phenotypeTerm.id goId,
diseaseTerm.nm diseaseNm,
diseaseTerm.acc_txt diseaseAcc,
diseaseTerm.acc_db_cd diseaseAccDBCd,
diseaseTerm.id diseaseId,
via_gene_qty geneNetworkCount,
via_chem_qty chemNetworkCount,
indirect_reference_qty referenceCount,
COUNT ( * ) OVER ( ) fullRowCount
FROM
phenotype_term pt
inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id
inner join term diseaseTerm on pt.term_id = diseaseTerm.id
WHERE
phenotypeTerm.id IN ( select distinct
dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id = '1233869')
and diseaseTerm.object_type_id = 3
ORDER BY
chemNetworkCount desc ,
geneNetworkCount desc
LIMIT 50 ;
Date: 2024-09-07 02:06:30
Duration: 5m27s
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GoDiseasesDAO */
phenotypeTerm.nm goNm,
phenotypeTerm.nm_html goNmHTML,
phenotypeTerm.acc_txt goAcc,
phenotypeTerm.id goId,
diseaseTerm.nm diseaseNm,
diseaseTerm.acc_txt diseaseAcc,
diseaseTerm.acc_db_cd diseaseAccDBCd,
diseaseTerm.id diseaseId,
via_gene_qty geneNetworkCount,
via_chem_qty chemNetworkCount,
indirect_reference_qty referenceCount,
COUNT ( * ) OVER ( ) fullRowCount
FROM
phenotype_term pt
inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id
inner join term diseaseTerm on pt.term_id = diseaseTerm.id
WHERE
phenotypeTerm.id IN ( select distinct
dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id = '1220062')
and diseaseTerm.object_type_id = 3
ORDER BY
chemNetworkCount desc ,
geneNetworkCount desc
LIMIT 50 ;
Date: 2024-09-07 12:08:09
Duration: 45s392ms
Bind query: yes
x Hide
15
3
Details
3s867ms
1s178ms
1s370ms
1s289ms
select
g.nm genesymbol,
g.id geneid,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
count ( * ) over ( ) fullrowcount
from
term_enrichment_agent ea
inner join term g on ea.agent_term_id = g.id
where
ea.term_id = ?
and ea.enriched_term_id = ?
order by
g.nm_sort
limit ?;
Times Reported Time consuming queries #15
Day
Hour
Count
Duration
Avg duration
Sep 07 07 1 1s178ms 1s178ms 14 2 2s689ms 1s344ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 2s689ms - Times executed: 2 ]
x Hide
SELECT
/* ChemGOGenesDAO */
g.nm genesymbol,
g.id geneid,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment_agent ea
INNER JOIN term g ON ea.agent_term_id = g.id
WHERE
ea.term_id = '1268719'
AND ea.enriched_term_id = '1247445'
ORDER BY
g.nm_sort
LIMIT 50 ;
Date: 2024-09-07 14:06:04
Duration: 1s370ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemGOGenesDAO */
g.nm genesymbol,
g.id geneid,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment_agent ea
INNER JOIN term g ON ea.agent_term_id = g.id
WHERE
ea.term_id = '1432894'
AND ea.enriched_term_id = '1257227'
ORDER BY
g.nm_sort
LIMIT 50 ;
Date: 2024-09-07 14:54:06
Duration: 1s319ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemGOGenesDAO */
g.nm genesymbol,
g.id geneid,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment_agent ea
INNER JOIN term g ON ea.agent_term_id = g.id
WHERE
ea.term_id = '1336634'
AND ea.enriched_term_id = '1230176'
ORDER BY
g.nm_sort
LIMIT 50 ;
Date: 2024-09-07 07:13:42
Duration: 1s178ms
Bind query: yes
x Hide
16
3
Details
3s701ms
1s66ms
1s326ms
1s233ms
select
fg.nm fromgenesymbol,
fg.acc_txt fromgeneacc,
tg.nm togenesymbol,
tg.acc_txt togeneacc,
ft.nm fromtaxonnm,
ft.secondary_nm fromtaxoncommonnm,
ft.acc_txt fromtaxonacc,
tt.nm totaxonnm,
tt.secondary_nm totaxoncommonnm,
tt.acc_txt totaxonacc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
select
string_agg ( ggt.throughput_txt, ? order by ggt.throughput_txt)
from
gene_gene_ref_throughput ggt
where
ggt.gene_gene_reference_id = ggr.id) throughput,
count ( * ) over ( ) fullrowcount
from
gene_gene_reference ggr
inner join term fg on ggr.from_gene_id = fg.id
inner join term tg on ggr.to_gene_id = tg.id
inner join term ft on ggr.from_taxon_id = ft.id
inner join term tt on ggr.to_taxon_id = tt.id
where
ggr.reference_id = ?
order by
fg.nm_sort,
tg.nm_sort
limit ?;
Times Reported Time consuming queries #16
Day
Hour
Count
Duration
Avg duration
Sep 07 05 3 3s701ms 1s233ms
x Hide
Examples User(s) involved
[ User: qaeu - Total duration: 1s326ms - Times executed: 1 ]
[ User: pubeu - Total duration: 1s308ms - Times executed: 1 ]
x Hide
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-09-07 05:43:09
Duration: 1s326ms
Database: ctdprd51
User: qaeu
Bind query: yes
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-09-07 05:38:08
Duration: 1s308ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-09-07 05:38:09
Duration: 1s66ms
Bind query: yes
x Hide
17
3
Details
3s321ms
1s100ms
1s118ms
1s107ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
stressorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or exposuremarkerterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
studycountries
limit ? offset ?;
Times Reported Time consuming queries #17
Day
Hour
Count
Duration
Avg duration
Sep 07 01 3 3s321ms 1s107ms
x Hide
Examples
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
stressorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1311260')
or exposureMarkerTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1311260')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
studyCountries
LIMIT 50 OFFSET 750 ;
Date: 2024-09-07 01:22:26
Duration: 1s118ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
stressorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1311260')
or exposureMarkerTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1311260')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
studyCountries
LIMIT 50 OFFSET 850 ;
Date: 2024-09-07 01:24:18
Duration: 1s102ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
stressorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1311260')
or exposureMarkerTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1311260')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
studyCountries
LIMIT 50 OFFSET 800 ;
Date: 2024-09-07 01:23:50
Duration: 1s100ms
Bind query: yes
x Hide
18
2
Details
13s364ms
4s222ms
9s141ms
6s682ms
select
sq.*,
count ( * ) over ( ) fullrowcount
from ( select distinct
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
from
dag_node gt
inner join gene_go_annot gga on gt.object_id = gga.go_term_id
inner join term g on gga.gene_id = g.id
where
gt.id in (
select
p.descendant_dag_node_id
from
dag_path p
where
p.ancestor_object_id = ?)
and gga.is_not = false ) sq
order by
sq.gonmsort,
sq.genesymbolsort
limit ?;
Times Reported Time consuming queries #18
Day
Hour
Count
Duration
Avg duration
Sep 07 03 1 4s222ms 4s222ms 12 1 9s141ms 9s141ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 13s364ms - Times executed: 2 ]
x Hide
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1258021')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort
LIMIT 50 ;
Date: 2024-09-07 12:31:04
Duration: 9s141ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1231015')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort
LIMIT 50 ;
Date: 2024-09-07 03:26:37
Duration: 4s222ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
19
2
Details
8s551ms
4s261ms
4s290ms
4s275ms
select
? "Input",
sqi.chem_nm "ChemicalName",
sqi.chem_acc_txt "ChemicalID",
sqi.casrn "CasRN",
sqi.gene_symbol "GeneSymbol",
sqi.gene_acc_txt "GeneID",
sqi.ontology_nm "Ontology",
sqi.go_term_nm "GoTermName",
sqi.go_acc_txt "GoTermID"
from ( with sq as (
select distinct
c.id chem_id,
c.nm chem_nm,
c.acc_txt chem_acc_txt,
c.secondary_nm casrn,
c.nm_sort chem_nm_sort,
gcr.gene_id,
g.nm gene_symbol,
g.acc_txt gene_acc_txt,
g.nm_sort gene_symbol_sort
from
term c
inner join gene_chem_reference gcr on c.id = gcr.chem_id
inner join term g on gcr.gene_id = g.id
where ( c.id = ?) )
select distinct
sq.chem_nm,
sq.chem_acc_txt,
sq.casrn,
sq.gene_symbol,
sq.gene_acc_txt,
gt.nm go_term_nm,
gt.acc_txt go_acc_txt,
sq.chem_nm_sort,
sq.gene_symbol_sort,
gt.nm_sort,
d.nm ontology_nm
from
sq
inner join gene_go_annot gga on sq.gene_id = gga.gene_id
inner join dag_node gt on gga.go_term_id = gt.object_id
inner join dag d on gt.dag_id = d.id
where
gga.is_not = false
and ( d.id = ?
or d.id = ?)
order by
sq.chem_nm_sort,
sq.gene_symbol_sort,
d.nm,
gt.nm_sort) sqi;
Times Reported Time consuming queries #19
Day
Hour
Count
Duration
Avg duration
Sep 07 05 2 8s551ms 4s275ms
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Examples User(s) involved
[ User: qaeu - Total duration: 4s261ms - Times executed: 1 ]
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SELECT
/* BatchChemGODAO */
'ddt' "Input",
sqi.chem_nm "ChemicalName",
sqi.chem_acc_txt "ChemicalID",
sqi.casRN "CasRN",
sqi.gene_symbol "GeneSymbol",
sqi.gene_acc_txt "GeneID",
sqi.ontology_nm "Ontology",
sqi.go_term_nm "GoTermName",
sqi.go_acc_txt "GoTermID"
FROM ( WITH sq AS (
SELECT DISTINCT
c.id chem_id,
c.nm chem_nm,
c.acc_txt chem_acc_txt,
c.secondary_nm casRN,
c.nm_sort chem_nm_sort,
gcr.gene_id,
g.nm gene_symbol,
g.acc_txt gene_acc_txt,
g.nm_sort gene_symbol_sort
FROM
term c
INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id
INNER JOIN term g ON gcr.gene_id = g.id
WHERE ( c.id = 1295763 ) )
SELECT DISTINCT
sq.chem_nm,
sq.chem_acc_txt,
sq.casRN,
sq.gene_symbol,
sq.gene_acc_txt,
gt.nm go_term_nm,
gt.acc_txt go_acc_txt,
sq.chem_nm_sort,
sq.gene_symbol_sort,
gt.nm_sort,
d.nm ontology_nm
FROM
sq
INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id
INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
gga.is_not = false
AND ( d.id = 5
OR d.id = 4 )
ORDER BY
sq.chem_nm_sort,
sq.gene_symbol_sort,
d.nm,
gt.nm_sort) sqi;
Date: 2024-09-07 05:38:27
Duration: 4s290ms
Bind query: yes
SELECT
/* BatchChemGODAO */
'ddt' "Input",
sqi.chem_nm "ChemicalName",
sqi.chem_acc_txt "ChemicalID",
sqi.casRN "CasRN",
sqi.gene_symbol "GeneSymbol",
sqi.gene_acc_txt "GeneID",
sqi.ontology_nm "Ontology",
sqi.go_term_nm "GoTermName",
sqi.go_acc_txt "GoTermID"
FROM ( WITH sq AS (
SELECT DISTINCT
c.id chem_id,
c.nm chem_nm,
c.acc_txt chem_acc_txt,
c.secondary_nm casRN,
c.nm_sort chem_nm_sort,
gcr.gene_id,
g.nm gene_symbol,
g.acc_txt gene_acc_txt,
g.nm_sort gene_symbol_sort
FROM
term c
INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id
INNER JOIN term g ON gcr.gene_id = g.id
WHERE ( c.id = 1295763 ) )
SELECT DISTINCT
sq.chem_nm,
sq.chem_acc_txt,
sq.casRN,
sq.gene_symbol,
sq.gene_acc_txt,
gt.nm go_term_nm,
gt.acc_txt go_acc_txt,
sq.chem_nm_sort,
sq.gene_symbol_sort,
gt.nm_sort,
d.nm ontology_nm
FROM
sq
INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id
INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
gga.is_not = false
AND ( d.id = 5
OR d.id = 4 )
ORDER BY
sq.chem_nm_sort,
sq.gene_symbol_sort,
d.nm,
gt.nm_sort) sqi;
Date: 2024-09-07 05:43:28
Duration: 4s261ms
Database: ctdprd51
User: qaeu
Bind query: yes
x Hide
20
2
Details
8s298ms
4s69ms
4s228ms
4s149ms
select distinct
associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm,
associatedterm.id associatedtermid,
ptr.ixn_id ixnid,
associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort,
coalesce ( associatedterm.secondary_nm, ?) casrn,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype,
phenotypeterm.id phenotypeid,
(
select
string_agg ( distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce ( taxonterm.secondary_nm, ?) , ?) ) as taxonterms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
count ( distinct taxonterm.nm) taxoncount,
i.ixn_prose_html ixnprosehtml,
i.ixn_prose_txt ixnprose,
i.sort_txt ixnsort,
(
select
string_agg ( distinct r.acc_txt, ?) ) as references,
count ( distinct ptr.reference_id) refcount,
pt.indirect_term_qty inferredcount,
count ( * ) over ( ) fullrowcount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedterm on ptr.term_id = associatedterm.id
inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id
left outer join term taxonterm on ptr.taxon_id = taxonterm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedterm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id
where
ptr.term_id in ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id in ( select distinct
id
from
term baseterm
where
object_type_id = ?
and upper ( baseterm.nm)
like ?) )
and ptr.term_object_type_id = ?
and ptr.phenotype_id in ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id in ( select distinct
id
from
term baseterm
where
object_type_id = ?
and baseterm.id in (
select
object_id
from
db_link l
where
l.acc_txt = ?
and l.type_cd = ?
and l.object_type_id = ?) ) )
and taxonterm.id in ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id in ( select distinct
id
from
term baseterm
where
object_type_id = ?
and baseterm.id in (
select
object_id
from
db_link l
where
l.acc_txt = ?
and l.type_cd = ?
and l.object_type_id = ?) ) )
and i.id in (
select
ixn_id
from
ixn_axn
where
action_type_nm = ?
and action_degree_type_nm in ( . .. ) )
group by
associatedterm,
associatedtermnmsort,
phenotype,
casrn,
ixnid,
ixnprosehtml,
ixnprose,
ixnsort,
associatedtermid,
phenotypeid,
inferredcount
order by
associatedtermnmsort
limit ?;
Times Reported Time consuming queries #20
Day
Hour
Count
Duration
Avg duration
Sep 07 05 2 8s298ms 4s149ms
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Examples
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
ptr.term_id IN (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 2
and upper ( baseTerm.nm)
LIKE 'ZINC') )
and ptr.term_object_type_id = 2
and ptr.phenotype_id IN (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 5
and baseTerm.id in (
select
object_id
from
db_link l
where
l.acc_txt = 'GO:0006915'
AND l.type_cd = 'A'
AND l.object_type_id = 5 ) ) )
and taxonTerm.id in (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 1
and baseTerm.id in (
select
object_id
from
db_link l
where
l.acc_txt = '9606'
AND l.type_cd = 'A'
AND l.object_type_id = 1 ) ) )
and i.id in (
select
ixn_id
from
ixn_axn
where
action_type_nm = 'phenotype'
and action_degree_type_nm in ( 'increases') )
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 ;
Date: 2024-09-07 05:38:47
Duration: 4s228ms
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
ptr.term_id IN (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 2
and upper ( baseTerm.nm)
LIKE 'ZINC') )
and ptr.term_object_type_id = 2
and ptr.phenotype_id IN (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 5
and baseTerm.id in (
select
object_id
from
db_link l
where
l.acc_txt = 'GO:0006915'
AND l.type_cd = 'A'
AND l.object_type_id = 5 ) ) )
and taxonTerm.id in (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 1
and baseTerm.id in (
select
object_id
from
db_link l
where
l.acc_txt = '9606'
AND l.type_cd = 'A'
AND l.object_type_id = 1 ) ) )
and i.id in (
select
ixn_id
from
ixn_axn
where
action_type_nm = 'phenotype'
and action_degree_type_nm in ( 'increases') )
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 ;
Date: 2024-09-07 05:43:48
Duration: 4s69ms
Bind query: yes
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