1
351
Details
20m49s
3s3ms
3s806ms
3s561ms
select distinct
phenotypeterm.nm as gonm,
phenotypeterm.nm_html as gonmhtml,
phenotypeterm.acc_txt as goacc,
diseaseterm.nm as diseasenm,
diseaseterm.nm_html as diseasenmhtml,
diseaseterm.acc_txt as diseaseacc,
diseaseterm.acc_db_cd as diseaseaccdbcd,
chemterm.nm as chemnm,
chemterm.nm_html as chemnmhtml,
chemterm.acc_txt as chemacc,
geneterm.nm as genesymbol,
geneterm.nm_html as genesymbolhtml,
geneterm.acc_txt as geneacc,
count ( * ) over ( ) fullrowcount
from
phenotype_term_reference viachemptr,
phenotype_term_reference viageneptr,
term phenotypeterm,
term diseaseterm,
term geneterm,
term chemterm
where
exists ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id in ( select distinct
id
from
term baseterm
where
object_type_id = ?
and upper ( baseterm.nm)
like ?)
and diseaseterm.id = dp.descendant_object_id)
and viachemptr.phenotype_id = phenotypeterm.id
and viachemptr.term_object_type_id = ?
and viachemptr.term_id = diseaseterm.id
and viachemptr.via_term_object_type_id = ?
and viachemptr.via_term_id = chemterm.id
and viachemptr.term_id = viageneptr.term_id
and viachemptr.phenotype_id = viageneptr.phenotype_id
and viageneptr.via_term_object_type_id = ?
and viageneptr.via_term_id = geneterm.id
and exists (
select
?
from
gene_chem_reference
where
gene_id = geneterm.id
and chem_id = chemterm.id)
group by
phenotypeterm.nm,
phenotypeterm.nm_html,
phenotypeterm.acc_txt,
diseaseterm.nm,
diseaseterm.nm_html,
diseaseterm.acc_txt,
diseaseterm.acc_db_cd,
chemterm.nm,
chemterm.nm_html,
chemterm.acc_txt,
geneterm.nm,
geneterm.nm_html,
geneterm.acc_txt
order by
chemterm.nm
limit ? offset ?;
Times Reported Time consuming queries #1
Day
Hour
Count
Duration
Avg duration
Oct 05 00 6 21s274ms 3s545ms 01 2 7s58ms 3s529ms 02 22 1m19s 3s608ms 03 72 4m21s 3s626ms 04 117 7m3s 3s617ms 07 78 4m34s 3s513ms 08 41 2m23s 3s503ms 09 2 6s261ms 3s130ms 22 5 15s508ms 3s101ms 23 6 18s435ms 3s72ms
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Examples User(s) involved
[ User: pubeu - Total duration: 4m28s - Times executed: 75 ]
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select distinct
phenotypeTerm.nm AS goNm,
phenotypeTerm.nm_html AS goNmHtml,
phenotypeTerm.acc_txt AS goAcc,
diseaseTerm.nm AS diseaseNm,
diseaseTerm.nm_html AS diseaseNmHtml,
diseaseTerm.acc_txt AS diseaseAcc,
diseaseTerm.acc_db_cd AS diseaseAccDbCd,
chemTerm.nm AS chemNm,
chemTerm.nm_html AS chemNmHtml,
chemTerm.acc_txt AS chemAcc,
geneTerm.nm AS geneSymbol,
geneTerm.nm_html AS geneSymbolHtml,
geneTerm.acc_txt AS geneAcc,
COUNT ( * ) OVER ( ) fullRowCount
from
PHENOTYPE_TERM_REFERENCE viaChemPTR,
PHENOTYPE_TERM_REFERENCE viaGenePTR,
TERM phenotypeTerm,
TERM diseaseTerm,
TERM geneTerm,
TERM chemTerm
where
exists (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 3
and upper ( baseTerm.nm)
LIKE 'MEMORY DISORDERS')
and diseaseTerm.id = dp.descendant_object_id)
and viaChemPTR.phenotype_id = phenotypeTerm.id
and viaChemPTR.term_object_type_id = 3
and viaChemPTR.term_id = diseaseTerm.id
and viaChemPTR.via_term_object_type_id = 2
and viaChemPTR.via_term_id = chemTerm.id
and viaChemPTR.term_id = viaGenePTR.term_id
and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id
and viaGenePTR.via_term_object_type_id = 4
and viaGenePTR.via_term_id = geneTerm.id
and exists (
select
1
from
gene_chem_reference
where
gene_id = geneTerm.id
and chem_id = chemTerm.id)
GROUP BY
phenotypeTerm.nm,
phenotypeTerm.nm_html,
phenotypeTerm.acc_txt,
diseaseTerm.nm,
diseaseTerm.nm_html,
diseaseTerm.acc_txt,
diseaseTerm.acc_db_cd,
chemTerm.nm,
chemTerm.nm_html,
chemTerm.acc_txt,
geneTerm.nm,
geneTerm.nm_html,
geneTerm.acc_txt
order by
chemTerm.nm
LIMIT 50 OFFSET 7650 ;
Date: 2024-10-05 04:22:32
Duration: 3s806ms
Database: ctdprd51
User: pubeu
Bind query: yes
select distinct
phenotypeTerm.nm AS goNm,
phenotypeTerm.nm_html AS goNmHtml,
phenotypeTerm.acc_txt AS goAcc,
diseaseTerm.nm AS diseaseNm,
diseaseTerm.nm_html AS diseaseNmHtml,
diseaseTerm.acc_txt AS diseaseAcc,
diseaseTerm.acc_db_cd AS diseaseAccDbCd,
chemTerm.nm AS chemNm,
chemTerm.nm_html AS chemNmHtml,
chemTerm.acc_txt AS chemAcc,
geneTerm.nm AS geneSymbol,
geneTerm.nm_html AS geneSymbolHtml,
geneTerm.acc_txt AS geneAcc,
COUNT ( * ) OVER ( ) fullRowCount
from
PHENOTYPE_TERM_REFERENCE viaChemPTR,
PHENOTYPE_TERM_REFERENCE viaGenePTR,
TERM phenotypeTerm,
TERM diseaseTerm,
TERM geneTerm,
TERM chemTerm
where
exists (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 3
and upper ( baseTerm.nm)
LIKE 'MEMORY DISORDERS')
and diseaseTerm.id = dp.descendant_object_id)
and viaChemPTR.phenotype_id = phenotypeTerm.id
and viaChemPTR.term_object_type_id = 3
and viaChemPTR.term_id = diseaseTerm.id
and viaChemPTR.via_term_object_type_id = 2
and viaChemPTR.via_term_id = chemTerm.id
and viaChemPTR.term_id = viaGenePTR.term_id
and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id
and viaGenePTR.via_term_object_type_id = 4
and viaGenePTR.via_term_id = geneTerm.id
and exists (
select
1
from
gene_chem_reference
where
gene_id = geneTerm.id
and chem_id = chemTerm.id)
GROUP BY
phenotypeTerm.nm,
phenotypeTerm.nm_html,
phenotypeTerm.acc_txt,
diseaseTerm.nm,
diseaseTerm.nm_html,
diseaseTerm.acc_txt,
diseaseTerm.acc_db_cd,
chemTerm.nm,
chemTerm.nm_html,
chemTerm.acc_txt,
geneTerm.nm,
geneTerm.nm_html,
geneTerm.acc_txt
order by
chemTerm.nm
LIMIT 50 OFFSET 5650 ;
Date: 2024-10-05 04:03:13
Duration: 3s805ms
Database: ctdprd51
User: pubeu
Bind query: yes
select distinct
phenotypeTerm.nm AS goNm,
phenotypeTerm.nm_html AS goNmHtml,
phenotypeTerm.acc_txt AS goAcc,
diseaseTerm.nm AS diseaseNm,
diseaseTerm.nm_html AS diseaseNmHtml,
diseaseTerm.acc_txt AS diseaseAcc,
diseaseTerm.acc_db_cd AS diseaseAccDbCd,
chemTerm.nm AS chemNm,
chemTerm.nm_html AS chemNmHtml,
chemTerm.acc_txt AS chemAcc,
geneTerm.nm AS geneSymbol,
geneTerm.nm_html AS geneSymbolHtml,
geneTerm.acc_txt AS geneAcc,
COUNT ( * ) OVER ( ) fullRowCount
from
PHENOTYPE_TERM_REFERENCE viaChemPTR,
PHENOTYPE_TERM_REFERENCE viaGenePTR,
TERM phenotypeTerm,
TERM diseaseTerm,
TERM geneTerm,
TERM chemTerm
where
exists (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 3
and upper ( baseTerm.nm)
LIKE 'MEMORY DISORDERS')
and diseaseTerm.id = dp.descendant_object_id)
and viaChemPTR.phenotype_id = phenotypeTerm.id
and viaChemPTR.term_object_type_id = 3
and viaChemPTR.term_id = diseaseTerm.id
and viaChemPTR.via_term_object_type_id = 2
and viaChemPTR.via_term_id = chemTerm.id
and viaChemPTR.term_id = viaGenePTR.term_id
and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id
and viaGenePTR.via_term_object_type_id = 4
and viaGenePTR.via_term_id = geneTerm.id
and exists (
select
1
from
gene_chem_reference
where
gene_id = geneTerm.id
and chem_id = chemTerm.id)
GROUP BY
phenotypeTerm.nm,
phenotypeTerm.nm_html,
phenotypeTerm.acc_txt,
diseaseTerm.nm,
diseaseTerm.nm_html,
diseaseTerm.acc_txt,
diseaseTerm.acc_db_cd,
chemTerm.nm,
chemTerm.nm_html,
chemTerm.acc_txt,
geneTerm.nm,
geneTerm.nm_html,
geneTerm.acc_txt
order by
chemTerm.nm
LIMIT 50 OFFSET 7350 ;
Date: 2024-10-05 04:20:42
Duration: 3s804ms
Database: ctdprd51
User: pubeu
Bind query: yes
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2
179
Details
4m12s
1s389ms
1s593ms
1s412ms
select
coalesce ( d.abbr_display, d.nm_display) nm # ?,
d.description # ?,
coalesce ( d.abbr, d.nm) anchor # ?,
get_homepage_url ( d.id) url # ?
from
db d # ?
where
d.id in ( # ?
select
l.db_id # ? from db_link l # ?
where
l.type_cd = ? # ?
and l.object_type_id = ?) # ?
order by
?;
Times Reported Time consuming queries #2
Day
Hour
Count
Duration
Avg duration
Oct 05 00 4 5s626ms 1s406ms 01 10 14s129ms 1s412ms 02 8 11s273ms 1s409ms 03 5 7s71ms 1s414ms 04 8 11s316ms 1s414ms 05 22 30s965ms 1s407ms 06 12 16s908ms 1s409ms 08 9 12s669ms 1s407ms 09 3 4s227ms 1s409ms 10 4 5s655ms 1s413ms 11 5 7s42ms 1s408ms 12 11 15s580ms 1s416ms 13 10 14s41ms 1s404ms 14 3 4s416ms 1s472ms 15 3 4s239ms 1s413ms 16 6 8s467ms 1s411ms 17 9 12s684ms 1s409ms 18 5 7s46ms 1s409ms 19 11 15s657ms 1s423ms 20 5 7s109ms 1s421ms 21 8 11s303ms 1s412ms 22 7 9s899ms 1s414ms 23 11 15s508ms 1s409ms
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Examples User(s) involved
[ User: pubeu - Total duration: 1m48s - Times executed: 77 ]
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SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-10-05 14:23:13
Duration: 1s593ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-10-05 19:40:29
Duration: 1s487ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
COALESCE ( d.abbr_display, d.nm_display) nm # 015 ,
d.description # 015 ,
COALESCE ( d.abbr, d.nm) anchor # 015 ,
get_homepage_url ( d.id) url # 015
FROM
db d # 015
WHERE
d.id IN ( # 015
SELECT
l.db_id # 015 FROM db_link l # 015
WHERE
l.type_cd = 'X' # 015
AND l.object_type_id = 4 ) # 015
ORDER BY
1 ;
Date: 2024-10-05 12:04:21
Duration: 1s487ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
3
138
Details
2m38s
1s64ms
1s266ms
1s151ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
exposuremarkerterm.id = ?
or receptorterm.id = ?
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #3
Day
Hour
Count
Duration
Avg duration
Oct 05 00 6 6s807ms 1s134ms 01 2 2s332ms 1s166ms 02 4 4s600ms 1s150ms 03 4 4s548ms 1s137ms 04 4 4s576ms 1s144ms 05 5 6s1ms 1s200ms 06 3 3s424ms 1s141ms 07 3 3s409ms 1s136ms 08 5 5s767ms 1s153ms 09 3 3s500ms 1s166ms 10 1 1s138ms 1s138ms 11 4 4s696ms 1s174ms 12 7 7s932ms 1s133ms 13 2 2s292ms 1s146ms 14 9 10s311ms 1s145ms 15 5 5s690ms 1s138ms 16 6 6s885ms 1s147ms 17 10 11s342ms 1s134ms 18 10 11s646ms 1s164ms 19 7 7s666ms 1s95ms 20 6 6s916ms 1s152ms 21 12 13s763ms 1s146ms 22 11 12s925ms 1s175ms 23 9 10s662ms 1s184ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 59s450ms - Times executed: 52 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1439394'
or receptorTerm.id = '1439394'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 05:38:40
Duration: 1s266ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1439394'
or receptorTerm.id = '1439394'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 05:43:42
Duration: 1s252ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '2033757'
or receptorTerm.id = '2033757'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 20:00:17
Duration: 1s230ms
Bind query: yes
x Hide
4
52
Details
1m4s
1s166ms
1s386ms
1s248ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #4
Day
Hour
Count
Duration
Avg duration
Oct 05 01 1 1s208ms 1s208ms 02 3 3s637ms 1s212ms 04 3 3s767ms 1s255ms 05 4 5s89ms 1s272ms 06 3 3s637ms 1s212ms 07 3 3s765ms 1s255ms 08 1 1s166ms 1s166ms 09 2 2s557ms 1s278ms 10 1 1s241ms 1s241ms 11 1 1s179ms 1s179ms 12 1 1s246ms 1s246ms 13 3 3s814ms 1s271ms 14 2 2s539ms 1s269ms 15 1 1s233ms 1s233ms 16 1 1s270ms 1s270ms 17 6 7s640ms 1s273ms 18 2 2s511ms 1s255ms 19 2 2s385ms 1s192ms 20 5 6s271ms 1s254ms 21 5 6s197ms 1s239ms 22 2 2s573ms 1s286ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 19s985ms - Times executed: 16 ]
[ User: qaeu - Total duration: 1s334ms - Times executed: 1 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1217866')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1217866')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 05:38:39
Duration: 1s386ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1257003')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1257003')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 17:05:25
Duration: 1s375ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.phenotype_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1217866')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1217866')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 05:43:40
Duration: 1s334ms
Database: ctdprd51
User: qaeu
Bind query: yes
x Hide
5
42
Details
2m57s
3s784ms
14s18ms
4s230ms
select
coalesce ( st.alt_nm, t.nm) slimtermnm,
(
select
count ( * )
from
slim_term_mapping stm
inner join chem_disease cd on cd.disease_id = stm.mapped_term_id
where
cd.chem_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
and stm.slim_term_id = st.slim_term_id
and cd.curated_reference_qty > ?) curatedcount,
(
select
count ( * )
from
slim_term_mapping stm
inner join chem_disease cd on cd.disease_id = stm.mapped_term_id
where
cd.chem_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
and stm.slim_term_id = st.slim_term_id
and cd.indirect_gene_qty > ?) inferredcount
from
slim_term st
inner join term t on st.slim_term_id = t.id
where
st.slim_id = ?
order by
?;
Times Reported Time consuming queries #5
Day
Hour
Count
Duration
Avg duration
Oct 05 01 2 7s791ms 3s895ms 03 5 19s816ms 3s963ms 04 2 7s870ms 3s935ms 05 1 3s975ms 3s975ms 06 1 3s925ms 3s925ms 10 1 4s187ms 4s187ms 11 1 3s940ms 3s940ms 12 1 3s866ms 3s866ms 13 1 3s801ms 3s801ms 14 1 3s870ms 3s870ms 16 1 14s18ms 14s18ms 17 1 4s72ms 4s72ms 18 1 4s190ms 4s190ms 21 6 24s81ms 4s13ms 22 7 28s576ms 4s82ms 23 10 39s712ms 3s971ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1m19s - Times executed: 20 ]
x Hide
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1434692')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1434692')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-10-05 16:12:51
Duration: 14s18ms
Bind query: yes
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1270515')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1270515')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-10-05 21:05:39
Duration: 4s488ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemDiseasesBySlimDAO */
COALESCE ( st.alt_nm, t.nm) slimTermNm,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1324872')
AND stm.slim_term_id = st.slim_term_id
AND cd.curated_reference_qty > 0 ) curatedCount,
(
SELECT
COUNT ( * )
FROM
slim_term_mapping stm
INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id
WHERE
cd.chem_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1324872')
AND stm.slim_term_id = st.slim_term_id
AND cd.indirect_gene_qty > 0 ) inferredCount
FROM
slim_term st
INNER JOIN term t ON st.slim_term_id = t.id
WHERE
st.slim_id = 1
ORDER BY
1 ;
Date: 2024-10-05 22:02:17
Duration: 4s321ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
6
42
Details
48s170ms
1s85ms
1s183ms
1s146ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
exposuremarkerterm.id = ?
or receptorterm.id = ?
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort;
Times Reported Time consuming queries #6
Day
Hour
Count
Duration
Avg duration
Oct 05 01 4 4s624ms 1s156ms 02 1 1s164ms 1s164ms 03 1 1s85ms 1s85ms 04 5 5s746ms 1s149ms 05 1 1s136ms 1s136ms 08 6 6s931ms 1s155ms 11 7 8s23ms 1s146ms 14 4 4s504ms 1s126ms 15 4 4s624ms 1s156ms 17 5 5s705ms 1s141ms 18 2 2s345ms 1s172ms 19 1 1s119ms 1s119ms 21 1 1s160ms 1s160ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 5s729ms - Times executed: 5 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '2040591'
or receptorTerm.id = '2040591'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort;
Date: 2024-10-05 08:42:49
Duration: 1s183ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '1471115'
or receptorTerm.id = '1471115'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort;
Date: 2024-10-05 08:37:09
Duration: 1s178ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
exposureMarkerTerm.id = '2014556'
or receptorTerm.id = '2014556'
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort;
Date: 2024-10-05 18:23:45
Duration: 1s173ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
7
30
Details
51s492ms
1s280ms
2s368ms
1s716ms
select distinct
associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm,
associatedterm.id associatedtermid,
ptr.ixn_id ixnid,
associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort,
coalesce ( associatedterm.secondary_nm, ?) casrn,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype,
phenotypeterm.id phenotypeid,
(
select
string_agg ( distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce ( taxonterm.secondary_nm, ?) , ?) ) as taxonterms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
count ( distinct taxonterm.nm) taxoncount,
i.ixn_prose_html ixnprosehtml,
i.ixn_prose_txt ixnprose,
i.sort_txt ixnsort,
(
select
string_agg ( distinct r.acc_txt, ?) ) as references,
count ( distinct ptr.reference_id) refcount,
pt.indirect_term_qty inferredcount,
count ( * ) over ( ) fullrowcount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedterm on ptr.term_id = associatedterm.id
inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id
left outer join term taxonterm on ptr.taxon_id = taxonterm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedterm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id
where
associatedterm.id = any ( array ( (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?) ) )
and ptr.term_object_type_id = ?
group by
associatedterm,
associatedtermnmsort,
phenotype,
casrn,
ixnid,
ixnprosehtml,
ixnprose,
ixnsort,
associatedtermid,
phenotypeid,
inferredcount
order by
associatedtermnmsort;
Times Reported Time consuming queries #7
Day
Hour
Count
Duration
Avg duration
Oct 05 12 22 37s220ms 1s691ms 15 4 7s79ms 1s769ms 17 4 7s193ms 1s798ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 24s27ms - Times executed: 14 ]
x Hide
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1434690') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort;
Date: 2024-10-05 12:02:58
Duration: 2s368ms
Database: ctdprd51
User: pubeu
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1434690') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort;
Date: 2024-10-05 12:02:54
Duration: 2s321ms
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1434690') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort;
Date: 2024-10-05 12:02:50
Duration: 2s282ms
Bind query: yes
x Hide
8
30
Details
38s633ms
1s216ms
1s414ms
1s287ms
select distinct
stressorterm.nm as chemnm,
stressorterm.nm_html as chemnmhtml,
stressorterm.nm_sort as chemnmsort,
stressorterm.acc_txt as chemacc,
(
select
string_agg ( distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?) ) as stressorsrctypenm,
stressor.src_details as stressorsrcdetails,
stressor.sample_qty as stressorsampleqty,
stressor.note as stressornote,
receptor.qty as nbrreceptors,
receptor.description as receptors,
receptor.note as receptornotes,
receptorterm.nm || ? || (
select
cd
from
object_type
where
id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms,
(
select
string_agg ( distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?) ) as smokerstatus,
receptor.age as agerange,
receptor.age_uom_nm as ageuomnm,
receptor.age_qualifier_nm as agequalifiernm,
receptor.gender_nm as gendernmsearch,
receptor.id receptorid,
(
select
string_agg ( pct || ? || gender_nm || ? || gender_nm_html, ?)
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderdetails,
(
select
string_agg ( distinct receptorrace.race_nm || ? || receptorrace.pct, ?) ) as receptorrace,
(
select
string_agg ( distinct eventassaymethod.nm, ?) ) as assaymethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumacctxt,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr,
event.detection_limit as detectionlimit,
event.detection_limit_uom as detectionlimituom,
event.detection_freq as detectionfreq,
event.note as eventnote,
(
select
string_agg ( distinct eventlocation.geographic_region_nm, ?) ) as stateorprovince,
(
select
string_agg ( distinct eventlocation.locality_txt, ?) ) as localitytxt,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
exposuremarkerterm.nm || ? || (
select
cd
from
object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers,
event.exp_marker_lvl as assaylevel,
assay_uom as measurement,
assay_measurement_stat as measurementstat,
assay_note as assaynote,
eiot.description as outcomerltnp,
diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield,
outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm,
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrauthorstxt,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
outcome.note as outcomenote,
eventlocation.exp_event_id as eventid,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
inner join reference r on e.reference_id = r.id
left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id
left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id
left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id
left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id
left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
left outer join country on eventlocation.country_id = country.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt
and e.reference_acc_db_id = referenceexp.reference_acc_db_id
left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
or receptorterm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
group by
chemnm,
chemnmhtml,
chemnmsort,
chemacc,
stressorsrcdetails,
stressorsampleqty,
stressornote,
receptorterms,
medium,
mediumacctxt,
assayedmarkers,
assaylevel,
measurement,
measurementstat,
assaynote,
outcomerltnp,
diseasefield,
phenotypefield,
phenotypeactiondegreetypenm,
ref,
r.abbr_authors_txt,
collectionstartandendyr,
receptorid,
detectionlimit,
detectionlimituom,
detectionfreq,
eventnote,
outcomenote,
eventid
order by
chemnmsort
limit ?;
Times Reported Time consuming queries #8
Day
Hour
Count
Duration
Avg duration
Oct 05 00 2 2s499ms 1s249ms 01 4 5s115ms 1s278ms 02 2 2s471ms 1s235ms 05 2 2s813ms 1s406ms 06 3 3s853ms 1s284ms 08 2 2s642ms 1s321ms 10 4 4s994ms 1s248ms 12 1 1s260ms 1s260ms 13 1 1s414ms 1s414ms 15 1 1s262ms 1s262ms 16 1 1s247ms 1s247ms 17 2 2s674ms 1s337ms 18 1 1s252ms 1s252ms 19 1 1s275ms 1s275ms 20 1 1s216ms 1s216ms 21 1 1s231ms 1s231ms 23 1 1s407ms 1s407ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 12s607ms - Times executed: 10 ]
x Hide
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077448')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077448')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 13:58:42
Duration: 1s414ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077448')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077448')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 05:38:42
Duration: 1s412ms
Bind query: yes
SELECT DISTINCT
stressorTerm.nm as chemNm,
stressorTerm.nm_html as chemNmHtml,
stressorTerm.nm_sort as chemNmSort,
stressorTerm.acc_txt as chemAcc,
(
SELECT
STRING_AGG ( distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|') ) as stressorSrcTypeNm,
stressor.src_details as stressorSrcDetails,
stressor.sample_qty as stressorSampleQty,
stressor.note as stressorNote,
receptor.qty as nbrReceptors,
receptor.description as receptors,
receptor.note as receptorNotes,
receptorTerm.nm || '^' || (
select
cd
from
object_type
where
id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms,
(
SELECT
STRING_AGG ( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ') ) as smokerStatus,
receptor.age as ageRange,
receptor.age_uom_nm as ageUOMNm,
receptor.age_qualifier_nm as ageQualifierNm,
receptor.gender_nm as genderNmSearch,
receptor.id receptorID,
(
SELECT
STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|')
from
exp_receptor_gender
where
exp_receptor_id = receptor.id) as genderDetails,
(
SELECT
STRING_AGG ( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ') ) as receptorRace,
(
SELECT
STRING_AGG ( DISTINCT eventAssayMethod.nm, ' | ') ) as assayMethods,
event.medium_nm as medium,
event.medium_term_acc_txt as mediumAccTxt,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr,
event.detection_limit as detectionLimit,
event.detection_limit_uom as detectionLimitUOM,
event.detection_freq as detectionFreq,
event.note as eventNote,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.geographic_region_nm, ' | ') ) as stateOrProvince,
(
SELECT
STRING_AGG ( DISTINCT eventLocation.locality_txt, ' | ') ) as localityTxt,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
exposureMarkerTerm.nm || '^' || (
select
cd
from
object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers,
event.exp_marker_lvl as assayLevel,
assay_uom as measurement,
assay_measurement_stat as measurementStat,
assay_note as assayNote,
eiot.description as outcomeRltnp,
diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField,
outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm,
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
r.abbr_authors_txt as abbrAuthorsTxt,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
outcome.note as outcomeNote,
eventLocation.exp_event_id as eventID,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
inner join reference r ON e.reference_id = r.id
left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id
left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id
left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id
left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id
left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id
left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
left outer join country ON eventLocation.country_id = country.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt
and e.reference_acc_db_id = referenceExp.reference_acc_db_id
left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id
where
outcome.disease_id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077448')
or receptorTerm.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '2077448')
GROUP BY
chemNm,
chemNmHtml,
chemNmSort,
chemAcc,
stressorSrcDetails,
stressorSampleQty,
stressorNote,
receptorTerms,
medium,
mediumAccTxt,
assayedMarkers,
assayLevel,
measurement,
measurementStat,
assayNote,
outcomeRltnp,
diseaseField,
phenotypeField,
phenotypeActionDegreeTypeNm,
ref,
r.abbr_authors_txt,
collectionStartAndEndYr,
receptorID,
detectionLimit,
detectionLimitUOM,
detectionFreq,
eventNote,
outcomeNote,
eventID
order by
chemNmSort
LIMIT 50 ;
Date: 2024-10-05 17:43:38
Duration: 1s410ms
Bind query: yes
x Hide
9
23
Details
32s34ms
1s314ms
1s488ms
1s392ms
select
t.nm,
t.nm_html nmhtml,
t.secondary_nm secondarynm,
t.acc_txt acc,
? || t.nm accquerystr,
t.has_chems haschems,
t.has_diseases hasdiseases,
t.has_exposures hasexposures,
t.has_phenotypes hasphenotypes,
count ( * ) over ( ) fullrowcount
from
term t
where
t.object_type_id = ?
and regexp_replace ( upper ( substring ( t.nm, ?, ?) ) , ?, ?) = ?
order by
t.nm_sort
limit ?;
Times Reported Time consuming queries #9
Day
Hour
Count
Duration
Avg duration
Oct 05 00 1 1s401ms 1s401ms 01 1 1s408ms 1s408ms 03 2 2s728ms 1s364ms 05 2 2s722ms 1s361ms 06 1 1s414ms 1s414ms 09 2 2s791ms 1s395ms 10 3 4s199ms 1s399ms 11 5 6s988ms 1s397ms 12 2 2s862ms 1s431ms 13 1 1s415ms 1s415ms 14 1 1s371ms 1s371ms 16 2 2s730ms 1s365ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 15s307ms - Times executed: 11 ]
x Hide
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-10-05 12:31:27
Duration: 1s488ms
Bind query: yes
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-10-05 13:23:38
Duration: 1s415ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GeneBrowseTermsDAO */
t.nm,
t.nm_html nmHtml,
t.secondary_nm secondaryNm,
t.acc_txt acc,
'name:' || t.nm accQueryStr,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_phenotypes hasPhenotypes,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term t
WHERE
t.object_type_id = '4'
AND REGEXP_REPLACE ( UPPER ( SUBSTRING ( t.nm, 1 , 1 ) ) , '[^A-Z]', '#') = 'A'
ORDER BY
t.nm_sort
LIMIT 100 ;
Date: 2024-10-05 11:41:16
Duration: 1s414ms
Bind query: yes
x Hide
10
16
Details
1m52s
1s542ms
9s151ms
7s16ms
select
sq.*,
count ( * ) over ( ) fullrowcount
from ( select distinct
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
from
dag_node gt
inner join gene_go_annot gga on gt.object_id = gga.go_term_id
inner join term g on gga.gene_id = g.id
where
gt.id in (
select
p.descendant_dag_node_id
from
dag_path p
where
p.ancestor_object_id = ?)
and gga.is_not = false ) sq
order by
sq.gonmsort,
sq.genesymbolsort;
Times Reported Time consuming queries #10
Day
Hour
Count
Duration
Avg duration
Oct 05 10 4 35s133ms 8s783ms 11 4 35s556ms 8s889ms 14 4 6s192ms 1s548ms 15 4 35s386ms 8s846ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 35s640ms - Times executed: 4 ]
x Hide
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1259602')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort;
Date: 2024-10-05 11:20:25
Duration: 9s151ms
Bind query: yes
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1259602')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort;
Date: 2024-10-05 10:17:25
Duration: 8s999ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1259602')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort;
Date: 2024-10-05 15:47:01
Duration: 8s978ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
11
16
Details
1m5s
1s23ms
5s751ms
4s93ms
select
d.abbr dagabbr,
d.nm dagnm,
gt.level_min_no daglevelmin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pvalcorrected,
te.raw_p_val pvalraw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
count ( * ) over ( ) fullrowcount
from
term_enrichment te
inner join dag_node gt on te.enriched_term_id = gt.object_id
inner join dag d on gt.dag_id = d.id
where
te.term_id = ?
and te.enriched_object_type_id = ?
order by
te.corrected_p_val,
d.abbr,
gt.nm_sort
limit ?;
Times Reported Time consuming queries #11
Day
Hour
Count
Duration
Avg duration
Oct 05 01 3 11s973ms 3s991ms 03 1 5s370ms 5s370ms 06 1 5s313ms 5s313ms 08 1 5s585ms 5s585ms 10 2 10s880ms 5s440ms 12 2 6s556ms 3s278ms 13 1 5s751ms 5s751ms 15 1 1s23ms 1s23ms 16 2 2s150ms 1s75ms 17 1 5s504ms 5s504ms 23 1 5s379ms 5s379ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 17s665ms - Times executed: 4 ]
x Hide
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1270458'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-10-05 13:50:33
Duration: 5s751ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1433170'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-10-05 08:39:51
Duration: 5s585ms
Bind query: yes
SELECT
/* ChemGODAO */
d.abbr dagAbbr,
d.nm dagNm,
gt.level_min_no dagLevelMin,
gt.nm gonm,
gt.nm_html gonmhtml,
gt.acc_txt goacc,
gt.object_id goid,
te.corrected_p_val pValCorrected,
te.raw_p_val pValRaw,
te.target_match_qty targetmatchqty,
te.target_total_qty targettotalqty,
te.background_match_qty backgroundmatchqty,
te.background_total_qty backgroundtotalqty,
COUNT ( * ) OVER ( ) fullRowCount
FROM
term_enrichment te
INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id
INNER JOIN dag d ON gt.dag_id = d.id
WHERE
te.term_id = '1401428'
AND te.enriched_object_type_id = 5
ORDER BY
te.corrected_p_val,
d.abbr,
gt.nm_sort
LIMIT 50 ;
Date: 2024-10-05 01:49:26
Duration: 5s575ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
12
15
Details
31s851ms
1s69ms
5s164ms
2s123ms
select
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
(
select
string_agg ( distinct stressorterm.nm || ? || (
select
cd
from object_type
where
id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?) ) as stressoragents,
(
select
string_agg ( distinct coalesce ( receptorterm.nm, ?) || ? || coalesce ( (
select
cd
from object_type
where
id = receptorterm.object_type_id) , ?) || ? || coalesce ( receptorterm.nm_html, ?) || ? || coalesce ( receptorterm.acc_txt, ?) || ? || coalesce ( receptorterm.acc_db_cd, ?) || ? || receptor.description, ?) ) as receptors,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
(
select
string_agg ( distinct location.locality_txt, ?) ) as localities,
(
select
string_agg ( distinct event.medium_nm || ? || coalesce ( event.medium_term_acc_txt, ?) , ?) ) as assaymediums,
(
select
string_agg ( distinct exposuremarkerterm.nm || ? || (
select
cd
from object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?) ) as assayedmarkers,
(
select
string_agg ( distinct diseaseterm.nm || ? || (
select
cd
from object_type
where
id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?) ) as diseases,
(
select
string_agg ( distinct phenotypeterm.nm || ? || (
select
cd
from object_type
where
id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?) ) as phenotypes,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
re.author_summary summary,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join reference r on e.reference_id = r.id
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join exp_event_location location on e.exp_event_id = location.exp_event_id
left outer join country on location.country_id = country.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
inner join reference_exp re on e.reference_id = re.reference_id
left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id
where
e.reference_id = any ( array (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like ?)
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressoragents
limit ?;
Times Reported Time consuming queries #12
Day
Hour
Count
Duration
Avg duration
Oct 05 01 1 1s521ms 1s521ms 02 1 1s71ms 1s71ms 03 1 5s164ms 5s164ms 04 3 4s441ms 1s480ms 05 1 1s534ms 1s534ms 09 1 2s937ms 2s937ms 12 4 6s888ms 1s722ms 18 1 1s618ms 1s618ms 22 1 1s514ms 1s514ms 23 1 5s157ms 5s157ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 12s46ms - Times executed: 5 ]
x Hide
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents
LIMIT 50 ;
Date: 2024-10-05 03:54:09
Duration: 5s164ms
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents
LIMIT 50 ;
Date: 2024-10-05 23:16:57
Duration: 5s157ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1433168')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1433168')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents
LIMIT 50 ;
Date: 2024-10-05 09:26:50
Duration: 2s937ms
Bind query: yes
x Hide
13
13
Details
27s682ms
1s19ms
6s415ms
2s129ms
select
d.nm diseasenm,
d.acc_txt diseaseacc,
d.acc_db_cd diseaseaccdbcd,
d.id diseaseid,
g.nm genesymbol,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid,
gd.network_score networkscore,
gd.indirect_chem_qty inferredcount,
gd.reference_qty referencecount,
gd.exposure_reference_qty exposurereferencecount,
case when gd.curated_reference_qty > ? then
(
select
string_agg ( a.action_type_cd || ? || a.action_type_nm, ?)
from
gene_disease_axn a
where
a.gene_id = gd.gene_id
and a.disease_id = gd.disease_id)
else
null
end actiontypes
from
gene_disease gd
inner join term g on gd.gene_id = g.id
inner join term d on gd.disease_id = d.id
where
gd.disease_id in (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?)
order by
actiontypes,
gd.network_score desc nulls last ,
g.nm_sort,
d.nm_sort
limit ?;
Times Reported Time consuming queries #13
Day
Hour
Count
Duration
Avg duration
Oct 05 06 1 1s217ms 1s217ms 08 1 1s28ms 1s28ms 16 1 1s19ms 1s19ms 18 1 1s25ms 1s25ms 19 1 1s194ms 1s194ms 20 1 2s974ms 2s974ms 22 4 10s181ms 2s545ms 23 3 9s41ms 3s13ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 12s39ms - Times executed: 6 ]
x Hide
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2083833')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-10-05 22:04:21
Duration: 6s415ms
Database: ctdprd51
User: pubeu
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2081051')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-10-05 23:08:00
Duration: 5s388ms
Bind query: yes
SELECT
/* DiseaseGeneAssnsDAO */
d.nm diseaseNm,
d.acc_txt diseaseAcc,
d.acc_db_cd diseaseAccDbCd,
d.id diseaseId,
g.nm geneSymbol,
g.acc_txt geneAcc,
g.acc_db_cd geneAccDbCd,
g.id geneId,
gd.network_score networkScore,
gd.indirect_chem_qty inferredCount,
gd.reference_qty referenceCount,
gd.exposure_reference_qty exposureReferenceCount,
CASE WHEN gd.curated_reference_qty > 0 THEN
(
SELECT
STRING_AGG ( a.action_type_cd || '^' || a.action_type_nm, '|')
FROM
gene_disease_axn a
WHERE
a.gene_id = gd.gene_id
AND a.disease_id = gd.disease_id)
ELSE
NULL
END actionTypes
FROM
gene_disease gd
INNER JOIN term g ON gd.gene_id = g.id
INNER JOIN term d ON gd.disease_id = d.id
WHERE
gd.disease_id IN (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '2088408')
ORDER BY
actionTypes,
gd.network_score DESC NULLS LAST ,
g.nm_sort,
d.nm_sort
LIMIT 50 ;
Date: 2024-10-05 20:57:11
Duration: 2s974ms
Bind query: yes
x Hide
14
12
Details
29s985ms
1s219ms
6s143ms
2s498ms
select distinct
associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm,
associatedterm.id associatedtermid,
ptr.ixn_id ixnid,
associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort,
coalesce ( associatedterm.secondary_nm, ?) casrn,
phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype,
phenotypeterm.id phenotypeid,
(
select
string_agg ( distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce ( taxonterm.secondary_nm, ?) , ?) ) as taxonterms,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
count ( distinct taxonterm.nm) taxoncount,
i.ixn_prose_html ixnprosehtml,
i.ixn_prose_txt ixnprose,
i.sort_txt ixnsort,
(
select
string_agg ( distinct r.acc_txt, ?) ) as references,
count ( distinct ptr.reference_id) refcount,
pt.indirect_term_qty inferredcount,
count ( * ) over ( ) fullrowcount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedterm on ptr.term_id = associatedterm.id
inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id
left outer join term taxonterm on ptr.taxon_id = taxonterm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedterm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id
where
associatedterm.id = any ( array ( (
select
p.descendant_object_id
from
dag_path p
where
p.ancestor_object_id = ?) ) )
and ptr.term_object_type_id = ?
group by
associatedterm,
associatedtermnmsort,
phenotype,
casrn,
ixnid,
ixnprosehtml,
ixnprose,
ixnsort,
associatedtermid,
phenotypeid,
inferredcount
order by
associatedtermnmsort
limit ?;
Times Reported Time consuming queries #14
Day
Hour
Count
Duration
Avg duration
Oct 05 03 1 6s104ms 6s104ms 12 7 11s47ms 1s578ms 15 1 1s661ms 1s661ms 16 1 3s350ms 3s350ms 17 1 1s677ms 1s677ms 23 1 6s143ms 6s143ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 6s303ms - Times executed: 4 ]
x Hide
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1395038') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 ;
Date: 2024-10-05 23:17:02
Duration: 6s143ms
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1395038') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 ;
Date: 2024-10-05 03:54:14
Duration: 6s104ms
Bind query: yes
select distinct
/* ChemPhenotypesAssnsDAO */
associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm,
associatedTerm.id associatedTermId,
ptr.ixn_id ixnId,
associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort,
COALESCE ( associatedTerm.secondary_nm, '') casRN,
phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype,
phenotypeTerm.id phenotypeId,
(
SELECT
STRING_AGG ( distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE ( taxonTerm.secondary_nm, '') , '|') ) as taxonTerms,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
COUNT ( DISTINCT taxonTerm.nm) taxonCount,
i.ixn_prose_html ixnProseHtml,
i.ixn_prose_txt ixnProse,
i.sort_txt ixnSort,
(
SELECT
STRING_AGG ( distinct r.acc_txt, '|') ) as references,
COUNT ( DISTINCT ptr.reference_id) refCount,
pt.indirect_term_qty inferredCount,
COUNT ( * ) OVER ( ) fullRowCount
from
phenotype_term_reference ptr
inner join phenotype_term pt on ptr.term_id = pt.term_id
and ptr.phenotype_id = pt.phenotype_id
inner join term associatedTerm on ptr.term_id = associatedTerm.id
inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id
left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id
inner join reference r on ptr.reference_id = r.id
inner join ixn i on ptr.ixn_id = i.id
inner join object_type o on associatedTerm.object_type_id = o.id
left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id
left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id
where
associatedTerm.id = ANY ( ARRAY ( (
SELECT
p.descendant_object_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1434692') ) )
and ptr.term_object_type_id = 2
group by
associatedTerm,
associatedTermNmSort,
phenotype,
casRN,
ixnId,
ixnProseHtml,
ixnProse,
ixnSort,
associatedTermId,
phenotypeId,
inferredCount
ORDER BY
associatedTermNmSort
LIMIT 50 ;
Date: 2024-10-05 16:54:43
Duration: 3s350ms
Bind query: yes
x Hide
15
9
Details
22s793ms
1s86ms
5s168ms
2s532ms
select
e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref,
(
select
string_agg ( distinct expstudyfactor.study_factor_nm, ?) ) as studyfactornms,
(
select
string_agg ( distinct eventproject.project_nm, ?) ) as associatedstudytitles,
(
select
string_agg ( distinct stressorterm.nm || ? || (
select
cd
from object_type
where
id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?) ) as stressoragents,
(
select
string_agg ( distinct coalesce ( receptorterm.nm, ?) || ? || coalesce ( (
select
cd
from object_type
where
id = receptorterm.object_type_id) , ?) || ? || coalesce ( receptorterm.nm_html, ?) || ? || coalesce ( receptorterm.acc_txt, ?) || ? || coalesce ( receptorterm.acc_db_cd, ?) || ? || receptor.description, ?) ) as receptors,
(
select
string_agg ( distinct country.nm, ?) ) as studycountries,
(
select
string_agg ( distinct location.locality_txt, ?) ) as localities,
(
select
string_agg ( distinct event.medium_nm || ? || coalesce ( event.medium_term_acc_txt, ?) , ?) ) as assaymediums,
(
select
string_agg ( distinct exposuremarkerterm.nm || ? || (
select
cd
from object_type
where
id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?) ) as assayedmarkers,
(
select
string_agg ( distinct diseaseterm.nm || ? || (
select
cd
from object_type
where
id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?) ) as diseases,
(
select
string_agg ( distinct phenotypeterm.nm || ? || (
select
cd
from object_type
where
id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?) ) as phenotypes,
(
select
string_agg ( distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?) ) as anatomyterms,
re.author_summary summary,
count ( * ) over ( ) fullrowcount
from
exposure e
inner join reference r on e.reference_id = r.id
inner join exp_stressor stressor on e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id
left outer join term receptorterm on receptor.term_id = receptorterm.id
left outer join exp_event event on e.exp_event_id = event.id
left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id
left outer join exp_event_location location on e.exp_event_id = location.exp_event_id
left outer join country on location.country_id = country.id
left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id
left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id
left outer join term diseaseterm on outcome.disease_id = diseaseterm.id
left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id
inner join term stressorterm on stressor.chem_id = stressorterm.id
left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id
left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id
inner join reference_exp re on e.reference_id = re.reference_id
left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id
where
e.reference_id = any ( array (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = ?)
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like ?)
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressoragents;
Times Reported Time consuming queries #15
Day
Hour
Count
Duration
Avg duration
Oct 05 03 1 5s166ms 5s166ms 04 1 1s432ms 1s432ms 12 1 1s86ms 1s86ms 22 4 6s223ms 1s555ms 23 2 8s884ms 4s442ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 7s929ms - Times executed: 4 ]
x Hide
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents;
Date: 2024-10-05 23:17:09
Duration: 5s168ms
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1395038')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents;
Date: 2024-10-05 03:54:21
Duration: 5s166ms
Bind query: yes
SELECT
/* ChemExposureStudiesAssnsDAO */
e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref,
(
SELECT
STRING_AGG ( DISTINCT expStudyFactor.study_factor_nm, ' | ') ) as studyFactorNms,
(
SELECT
STRING_AGG ( DISTINCT eventProject.project_nm, ' | ') ) as associatedStudyTitles,
(
SELECT
STRING_AGG ( distinct stressorTerm.nm || '^' || (
select
cd
from object_type
where
id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|') ) as stressorAgents,
(
SELECT
STRING_AGG ( distinct COALESCE ( receptorTerm.nm, '') || '^' || COALESCE ( (
select
cd
from object_type
where
id = receptorTerm.object_type_id) , '') || '^' || COALESCE ( receptorTerm.nm_html, '') || '^' || COALESCE ( receptorTerm.acc_txt, '') || '^' || COALESCE ( receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|') ) as receptors,
(
SELECT
STRING_AGG ( distinct country.nm, ' | ') ) as studyCountries,
(
SELECT
STRING_AGG ( distinct location.locality_txt, ' | ') ) as localities,
(
SELECT
STRING_AGG ( distinct event.medium_nm || '^' || COALESCE ( event.medium_term_acc_txt, '') , ' | ') ) as assayMediums,
(
SELECT
STRING_AGG ( distinct exposureMarkerTerm.nm || '^' || (
select
cd
from object_type
where
id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|') ) as assayedMarkers,
(
SELECT
STRING_AGG ( distinct diseaseTerm.nm || '^' || (
select
cd
from object_type
where
id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|') ) as diseases,
(
SELECT
STRING_AGG ( distinct phenotypeTerm.nm || '^' || (
select
cd
from object_type
where
id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|') ) as phenotypes,
(
SELECT
STRING_AGG ( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|') ) as anatomyTerms,
re.author_summary summary,
COUNT ( * ) OVER ( ) fullRowCount
FROM
exposure e
inner join reference r ON e.reference_id = r.id
inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id
left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id
left outer join term receptorTerm ON receptor.term_id = receptorTerm.id
left outer join exp_event event ON e.exp_event_id = event.id
left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id
left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id
left outer join country ON location.country_id = country.id
left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id
left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id
left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id
left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id
inner join term stressorTerm ON stressor.chem_id = stressorTerm.id
left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id
Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id
inner join reference_exp re ON e.reference_id = re.reference_id
left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id
where
e.reference_id = ANY ( ARRAY (
select
reference_id
from
exposure e1,
term chem,
exp_stressor s1
where
chem.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1433179')
and chem.id = s1.chem_id
and s1.id = e1.exp_stressor_id
union
select
reference_id
from
exposure e1,
term t,
exp_event event1
where
t.id in (
select
descendant_object_id
from
dag_path
where
ancestor_object_id = '1433179')
and t.id = event1.exp_marker_term_id
and event1.exp_marker_type_id in (
select
id
from
exp_marker_type
where
nm like 'chem%')
and event1.id = e1.exp_event_id) )
group by
e.reference_acc_txt,
r.abbr_authors_txt,
pub_start_yr,
re.author_summary
order by
stressorAgents;
Date: 2024-10-05 23:41:18
Duration: 3s716ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
16
7
Details
23s267ms
3s81ms
3s671ms
3s323ms
select distinct
phenotypeterm.nm as gonm,
phenotypeterm.nm_html as gonmhtml,
phenotypeterm.acc_txt as goacc,
diseaseterm.nm as diseasenm,
diseaseterm.nm_html as diseasenmhtml,
diseaseterm.acc_txt as diseaseacc,
diseaseterm.acc_db_cd as diseaseaccdbcd,
chemterm.nm as chemnm,
chemterm.nm_html as chemnmhtml,
chemterm.acc_txt as chemacc,
geneterm.nm as genesymbol,
geneterm.nm_html as genesymbolhtml,
geneterm.acc_txt as geneacc,
count ( * ) over ( ) fullrowcount
from
phenotype_term_reference viachemptr,
phenotype_term_reference viageneptr,
term phenotypeterm,
term diseaseterm,
term geneterm,
term chemterm
where
exists ( select distinct
dp.descendant_object_id
from
dag_path dp
where
dp.ancestor_object_id in ( select distinct
id
from
term baseterm
where
object_type_id = ?
and upper ( baseterm.nm)
like ?)
and diseaseterm.id = dp.descendant_object_id)
and viachemptr.phenotype_id = phenotypeterm.id
and viachemptr.term_object_type_id = ?
and viachemptr.term_id = diseaseterm.id
and viachemptr.via_term_object_type_id = ?
and viachemptr.via_term_id = chemterm.id
and viachemptr.term_id = viageneptr.term_id
and viachemptr.phenotype_id = viageneptr.phenotype_id
and viageneptr.via_term_object_type_id = ?
and viageneptr.via_term_id = geneterm.id
and exists (
select
?
from
gene_chem_reference
where
gene_id = geneterm.id
and chem_id = chemterm.id)
group by
phenotypeterm.nm,
phenotypeterm.nm_html,
phenotypeterm.acc_txt,
diseaseterm.nm,
diseaseterm.nm_html,
diseaseterm.acc_txt,
diseaseterm.acc_db_cd,
chemterm.nm,
chemterm.nm_html,
chemterm.acc_txt,
geneterm.nm,
geneterm.nm_html,
geneterm.acc_txt
order by
chemterm.nm
limit ?;
Times Reported Time consuming queries #16
Day
Hour
Count
Duration
Avg duration
Oct 05 00 3 10s844ms 3s614ms 08 1 3s91ms 3s91ms 09 1 3s81ms 3s81ms 22 1 3s100ms 3s100ms 23 1 3s150ms 3s150ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 9s847ms - Times executed: 3 ]
x Hide
select distinct
phenotypeTerm.nm AS goNm,
phenotypeTerm.nm_html AS goNmHtml,
phenotypeTerm.acc_txt AS goAcc,
diseaseTerm.nm AS diseaseNm,
diseaseTerm.nm_html AS diseaseNmHtml,
diseaseTerm.acc_txt AS diseaseAcc,
diseaseTerm.acc_db_cd AS diseaseAccDbCd,
chemTerm.nm AS chemNm,
chemTerm.nm_html AS chemNmHtml,
chemTerm.acc_txt AS chemAcc,
geneTerm.nm AS geneSymbol,
geneTerm.nm_html AS geneSymbolHtml,
geneTerm.acc_txt AS geneAcc,
COUNT ( * ) OVER ( ) fullRowCount
from
PHENOTYPE_TERM_REFERENCE viaChemPTR,
PHENOTYPE_TERM_REFERENCE viaGenePTR,
TERM phenotypeTerm,
TERM diseaseTerm,
TERM geneTerm,
TERM chemTerm
where
exists (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 3
and upper ( baseTerm.nm)
LIKE 'MEMORY DISORDERS')
and diseaseTerm.id = dp.descendant_object_id)
and viaChemPTR.phenotype_id = phenotypeTerm.id
and viaChemPTR.term_object_type_id = 3
and viaChemPTR.term_id = diseaseTerm.id
and viaChemPTR.via_term_object_type_id = 2
and viaChemPTR.via_term_id = chemTerm.id
and viaChemPTR.term_id = viaGenePTR.term_id
and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id
and viaGenePTR.via_term_object_type_id = 4
and viaGenePTR.via_term_id = geneTerm.id
and exists (
select
1
from
gene_chem_reference
where
gene_id = geneTerm.id
and chem_id = chemTerm.id)
GROUP BY
phenotypeTerm.nm,
phenotypeTerm.nm_html,
phenotypeTerm.acc_txt,
diseaseTerm.nm,
diseaseTerm.nm_html,
diseaseTerm.acc_txt,
diseaseTerm.acc_db_cd,
chemTerm.nm,
chemTerm.nm_html,
chemTerm.acc_txt,
geneTerm.nm,
geneTerm.nm_html,
geneTerm.acc_txt
order by
chemTerm.nm
LIMIT 50 ;
Date: 2024-10-05 00:07:56
Duration: 3s671ms
Bind query: yes
select distinct
phenotypeTerm.nm AS goNm,
phenotypeTerm.nm_html AS goNmHtml,
phenotypeTerm.acc_txt AS goAcc,
diseaseTerm.nm AS diseaseNm,
diseaseTerm.nm_html AS diseaseNmHtml,
diseaseTerm.acc_txt AS diseaseAcc,
diseaseTerm.acc_db_cd AS diseaseAccDbCd,
chemTerm.nm AS chemNm,
chemTerm.nm_html AS chemNmHtml,
chemTerm.acc_txt AS chemAcc,
geneTerm.nm AS geneSymbol,
geneTerm.nm_html AS geneSymbolHtml,
geneTerm.acc_txt AS geneAcc,
COUNT ( * ) OVER ( ) fullRowCount
from
PHENOTYPE_TERM_REFERENCE viaChemPTR,
PHENOTYPE_TERM_REFERENCE viaGenePTR,
TERM phenotypeTerm,
TERM diseaseTerm,
TERM geneTerm,
TERM chemTerm
where
exists (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 3
and upper ( baseTerm.nm)
LIKE 'MEMORY DISORDERS')
and diseaseTerm.id = dp.descendant_object_id)
and viaChemPTR.phenotype_id = phenotypeTerm.id
and viaChemPTR.term_object_type_id = 3
and viaChemPTR.term_id = diseaseTerm.id
and viaChemPTR.via_term_object_type_id = 2
and viaChemPTR.via_term_id = chemTerm.id
and viaChemPTR.term_id = viaGenePTR.term_id
and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id
and viaGenePTR.via_term_object_type_id = 4
and viaGenePTR.via_term_id = geneTerm.id
and exists (
select
1
from
gene_chem_reference
where
gene_id = geneTerm.id
and chem_id = chemTerm.id)
GROUP BY
phenotypeTerm.nm,
phenotypeTerm.nm_html,
phenotypeTerm.acc_txt,
diseaseTerm.nm,
diseaseTerm.nm_html,
diseaseTerm.acc_txt,
diseaseTerm.acc_db_cd,
chemTerm.nm,
chemTerm.nm_html,
chemTerm.acc_txt,
geneTerm.nm,
geneTerm.nm_html,
geneTerm.acc_txt
order by
chemTerm.nm
LIMIT 50 ;
Date: 2024-10-05 00:20:04
Duration: 3s666ms
Database: ctdprd51
User: pubeu
Bind query: yes
select distinct
phenotypeTerm.nm AS goNm,
phenotypeTerm.nm_html AS goNmHtml,
phenotypeTerm.acc_txt AS goAcc,
diseaseTerm.nm AS diseaseNm,
diseaseTerm.nm_html AS diseaseNmHtml,
diseaseTerm.acc_txt AS diseaseAcc,
diseaseTerm.acc_db_cd AS diseaseAccDbCd,
chemTerm.nm AS chemNm,
chemTerm.nm_html AS chemNmHtml,
chemTerm.acc_txt AS chemAcc,
geneTerm.nm AS geneSymbol,
geneTerm.nm_html AS geneSymbolHtml,
geneTerm.acc_txt AS geneAcc,
COUNT ( * ) OVER ( ) fullRowCount
from
PHENOTYPE_TERM_REFERENCE viaChemPTR,
PHENOTYPE_TERM_REFERENCE viaGenePTR,
TERM phenotypeTerm,
TERM diseaseTerm,
TERM geneTerm,
TERM chemTerm
where
exists (
select
/* DBConstants.getDAGTermSQL */
distinct dp.descendant_object_id
from
dag_path dp
WHERE
dp.ancestor_object_id in ( select distinct
id
from
term baseTerm
where
object_type_id = 3
and upper ( baseTerm.nm)
LIKE 'MEMORY DISORDERS')
and diseaseTerm.id = dp.descendant_object_id)
and viaChemPTR.phenotype_id = phenotypeTerm.id
and viaChemPTR.term_object_type_id = 3
and viaChemPTR.term_id = diseaseTerm.id
and viaChemPTR.via_term_object_type_id = 2
and viaChemPTR.via_term_id = chemTerm.id
and viaChemPTR.term_id = viaGenePTR.term_id
and viaChemPTR.phenotype_id = viaGenePTR.phenotype_id
and viaGenePTR.via_term_object_type_id = 4
and viaGenePTR.via_term_id = geneTerm.id
and exists (
select
1
from
gene_chem_reference
where
gene_id = geneTerm.id
and chem_id = chemTerm.id)
GROUP BY
phenotypeTerm.nm,
phenotypeTerm.nm_html,
phenotypeTerm.acc_txt,
diseaseTerm.nm,
diseaseTerm.nm_html,
diseaseTerm.acc_txt,
diseaseTerm.acc_db_cd,
chemTerm.nm,
chemTerm.nm_html,
chemTerm.acc_txt,
geneTerm.nm,
geneTerm.nm_html,
geneTerm.acc_txt
order by
chemTerm.nm
LIMIT 50 ;
Date: 2024-10-05 00:08:30
Duration: 3s506ms
Bind query: yes
x Hide
17
7
Details
9s714ms
1s156ms
1s817ms
1s387ms
select
fg.nm fromgenesymbol,
fg.acc_txt fromgeneacc,
tg.nm togenesymbol,
tg.acc_txt togeneacc,
ft.nm fromtaxonnm,
ft.secondary_nm fromtaxoncommonnm,
ft.acc_txt fromtaxonacc,
tt.nm totaxonnm,
tt.secondary_nm totaxoncommonnm,
tt.acc_txt totaxonacc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
select
string_agg ( ggt.throughput_txt, ? order by ggt.throughput_txt)
from
gene_gene_ref_throughput ggt
where
ggt.gene_gene_reference_id = ggr.id) throughput,
count ( * ) over ( ) fullrowcount
from
gene_gene_reference ggr
inner join term fg on ggr.from_gene_id = fg.id
inner join term tg on ggr.to_gene_id = tg.id
inner join term ft on ggr.from_taxon_id = ft.id
inner join term tt on ggr.to_taxon_id = tt.id
where
ggr.reference_id = ?
order by
fg.nm_sort,
tg.nm_sort
limit ?;
Times Reported Time consuming queries #17
Day
Hour
Count
Duration
Avg duration
Oct 05 03 1 1s267ms 1s267ms 05 4 6s1ms 1s500ms 16 1 1s156ms 1s156ms 23 1 1s288ms 1s288ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 1s217ms - Times executed: 1 ]
x Hide
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-10-05 05:38:08
Duration: 1s817ms
Bind query: yes
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-10-05 05:43:07
Duration: 1s486ms
Bind query: yes
SELECT
/* ReferenceGeneGeneIxnsDAO */
fg.nm fromGeneSymbol,
fg.acc_txt fromGeneAcc,
tg.nm toGeneSymbol,
tg.acc_txt toGeneAcc,
ft.nm fromTaxonNm,
ft.secondary_nm fromTaxonCommonNm,
ft.acc_txt fromTaxonAcc,
tt.nm toTaxonNm,
tt.secondary_nm toTaxonCommonNm,
tt.acc_txt toTaxonAcc,
ggr.experimental_sys_nm,
ggr.experimental_sys_type,
(
SELECT
STRING_AGG ( ggt.throughput_txt, ', ' ORDER BY ggt.throughput_txt)
FROM
gene_gene_ref_throughput ggt
WHERE
ggt.gene_gene_reference_id = ggr.id) throughput,
COUNT ( * ) OVER ( ) fullRowCount
FROM
gene_gene_reference ggr
INNER JOIN term fg ON ggr.from_gene_id = fg.id
INNER JOIN term tg ON ggr.to_gene_id = tg.id
INNER JOIN term ft ON ggr.from_taxon_id = ft.id
INNER JOIN term tt ON ggr.to_taxon_id = tt.id
WHERE
ggr.reference_id = '111363'
ORDER BY
fg.nm_sort,
tg.nm_sort
LIMIT 50 ;
Date: 2024-10-05 05:43:09
Duration: 1s481ms
Bind query: yes
x Hide
18
4
Details
25s980ms
1s499ms
8s188ms
6s495ms
select
sq.*,
count ( * ) over ( ) fullrowcount
from ( select distinct
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
from
dag_node gt
inner join gene_go_annot gga on gt.object_id = gga.go_term_id
inner join term g on gga.gene_id = g.id
where
gt.id in (
select
p.descendant_dag_node_id
from
dag_path p
where
p.ancestor_object_id = ?)
and gga.is_not = false ) sq
order by
sq.gonmsort,
sq.genesymbolsort
limit ?;
Times Reported Time consuming queries #18
Day
Hour
Count
Duration
Avg duration
Oct 05 10 1 8s151ms 8s151ms 11 1 8s188ms 8s188ms 14 1 1s499ms 1s499ms 15 1 8s141ms 8s141ms
x Hide
Examples User(s) involved
[ User: pubeu - Total duration: 9s641ms - Times executed: 2 ]
x Hide
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1259602')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort
LIMIT 50 ;
Date: 2024-10-05 11:20:08
Duration: 8s188ms
Bind query: yes
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1259602')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort
LIMIT 50 ;
Date: 2024-10-05 10:17:08
Duration: 8s151ms
Bind query: yes
SELECT
/* GoGenesDAO */
sq.*,
COUNT ( * ) OVER ( ) fullRowCount
FROM ( SELECT DISTINCT
gt.nm gonm,
gt.nm_html gonmhtml,
gt.nm_sort gonmsort,
gt.acc_txt goacc,
gt.object_id goid,
g.nm genesymbol,
g.nm_sort genesymbolsort,
g.acc_txt geneacc,
g.acc_db_cd geneaccdbcd,
g.id geneid
FROM
dag_node gt
INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id
INNER JOIN term g ON gga.gene_id = g.id
WHERE
gt.id IN (
SELECT
p.descendant_dag_node_id
FROM
dag_path p
WHERE
p.ancestor_object_id = '1259602')
AND gga.is_not = false ) sq
ORDER BY
sq.gonmsort,
sq.genesymbolsort
LIMIT 50 ;
Date: 2024-10-05 15:46:44
Duration: 8s141ms
Database: ctdprd51
User: pubeu
Bind query: yes
x Hide
19
4
Details
8s779ms
1s31ms
3s377ms
2s194ms
with recursive sub_node (
object_id,
id,
path,
lvl
) as (
select
n.object_id,
n.id,
array [n.nm_sort],
?
from
dag_node n
where
n.object_id = ?
union all
select
n.object_id,
n.id,
cast ( path || n.nm_sort as varchar ( ?) []) ,
sn.lvl + ?
from
dag_node n
inner join sub_node sn on ( n.parent_id = sn.id) )
select distinct
t.nm prinm,
t.nm_html prinmhtml,
t.secondary_nm secondarynm,
t.acc_db_cd accdbcd,
t.acc_txt termacc,
t.is_leaf isleaf,
t.has_chems haschems,
t.has_diseases hasdiseases,
t.has_exposures hasexposures,
t.has_genes hasgenes,
sn.lvl,
sn.path,
max ( sn.lvl) over ( ) maxlvl,
t.has_phenotypes hasphenotypes
from
sub_node sn
inner join term t on sn.object_id = t.id
where
sn.lvl <= ?
order by
sn.path;
Times Reported Time consuming queries #19
Day
Hour
Count
Duration
Avg duration
Oct 05 05 4 8s779ms 2s194ms
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Examples User(s) involved
[ User: qaeu - Total duration: 3s377ms - Times executed: 1 ]
[ User: pubeu - Total duration: 3s339ms - Times executed: 1 ]
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WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '593015'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-10-05 05:40:13
Duration: 3s377ms
Database: ctdprd51
User: qaeu
Bind query: yes
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '593015'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-10-05 05:35:12
Duration: 3s339ms
Database: ctdprd51
User: pubeu
Bind query: yes
WITH recursive sub_node (
object_id,
id,
path,
lvl
) AS (
SELECT
n.object_id,
n.id,
ARRAY [n.nm_sort],
1
FROM
dag_node n
WHERE
n.object_id = '1439087'
UNION ALL
SELECT
n.object_id,
n.id,
CAST ( path || n.nm_sort AS varchar ( 600 ) []) ,
sn.lvl + 1
FROM
dag_node n
INNER JOIN sub_node sn ON ( n.parent_id = sn.id) )
SELECT
/* TreeTermBasicsDAO.getDescendants */
DISTINCT t.nm priNm,
t.nm_html priNmHtml,
t.secondary_nm secondaryNm,
t.acc_db_cd accDbCd,
t.acc_txt termAcc,
t.is_leaf isLeaf,
t.has_chems hasChems,
t.has_diseases hasDiseases,
t.has_exposures hasExposures,
t.has_genes hasGenes,
sn.lvl,
sn.path,
MAX ( sn.lvl) OVER ( ) maxLvl,
t.has_phenotypes hasPhenotypes
FROM
sub_node sn
INNER JOIN term t ON sn.object_id = t.id
WHERE
sn.lvl <= 2
ORDER BY
sn.path;
Date: 2024-10-05 05:40:14
Duration: 1s31ms
Bind query: yes
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20
4
Details
8s104ms
1s950ms
2s70ms
2s26ms
select
r.id,
r.abbr_authors_txt authors,
r.title,
r.core_citation_txt citation,
r.pub_start_yr yr,
r.acc_txt refacc,
r.has_diseases
or r.has_ixns
or r.has_exposures
or r.has_phenotypes iscurated,
r.has_exposures,
count ( * ) over ( ) fullrowcount
from
reference r
where
r.id in (
select
reference_id
from
term_reference
where
term_id in ( . .. ) )
order by
r.sort_txt
limit ?;
Times Reported Time consuming queries #20
Day
Hour
Count
Duration
Avg duration
Oct 05 04 1 2s70ms 2s70ms 14 1 2s41ms 2s41ms 17 1 2s41ms 2s41ms 20 1 1s950ms 1s950ms
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Examples User(s) involved
[ User: pubeu - Total duration: 2s41ms - Times executed: 1 ]
x Hide
SELECT
/* RefsDAO */
r.id,
r.abbr_authors_txt authors,
r.title,
r.core_citation_txt citation,
r.pub_start_yr yr,
r.acc_txt refAcc,
r.has_diseases
or r.has_ixns
or r.has_exposures
or r.has_phenotypes iscurated,
r.has_exposures,
COUNT ( * ) OVER ( ) fullRowCount
FROM
reference r
WHERE
r.id IN (
select
reference_id
from
term_reference
where
term_id in ( '2051784') )
ORDER BY
r.sort_txt
LIMIT 50 ;
Date: 2024-10-05 04:23:46
Duration: 2s70ms
Bind query: yes
SELECT
/* RefsDAO */
r.id,
r.abbr_authors_txt authors,
r.title,
r.core_citation_txt citation,
r.pub_start_yr yr,
r.acc_txt refAcc,
r.has_diseases
or r.has_ixns
or r.has_exposures
or r.has_phenotypes iscurated,
r.has_exposures,
COUNT ( * ) OVER ( ) fullRowCount
FROM
reference r
WHERE
r.id IN (
select
reference_id
from
term_reference
where
term_id in ( '2053693') )
ORDER BY
r.sort_txt
LIMIT 50 ;
Date: 2024-10-05 17:43:06
Duration: 2s41ms
Bind query: yes
SELECT
/* RefsDAO */
r.id,
r.abbr_authors_txt authors,
r.title,
r.core_citation_txt citation,
r.pub_start_yr yr,
r.acc_txt refAcc,
r.has_diseases
or r.has_ixns
or r.has_exposures
or r.has_phenotypes iscurated,
r.has_exposures,
COUNT ( * ) OVER ( ) fullRowCount
FROM
reference r
WHERE
r.id IN (
select
reference_id
from
term_reference
where
term_id in ( '1439414') )
ORDER BY
r.sort_txt
LIMIT 50 ;
Date: 2024-10-05 14:23:34
Duration: 2s41ms
Database: ctdprd51
User: pubeu
Bind query: yes
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