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Global information
- Generated on Mon Jun 9 04:15:21 2025
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20250608
- Parsed 336,094 log entries in 19s
- Log start from 2025-06-08 00:00:00 to 2025-06-08 23:59:11
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Overview
Global Stats
- 237 Number of unique normalized queries
- 53,574 Number of queries
- 1d2h12m30s Total query duration
- 2025-06-08 00:00:00 First query
- 2025-06-08 23:59:11 Last query
- 9 queries/s at 2025-06-08 09:29:55 Query peak
- 1d2h12m30s Total query duration
- 4s707ms Prepare/parse total duration
- 8s602ms Bind total duration
- 1d2h12m16s Execute total duration
- 1,013 Number of events
- 94 Number of unique normalized events
- 732 Max number of times the same event was reported
- 0 Number of cancellation
- 7 Total number of automatic vacuums
- 14 Total number of automatic analyzes
- 9 Number temporary file
- 2.45 MiB Max size of temporary file
- 1.00 MiB Average size of temporary file
- 16,551 Total number of sessions
- 106 sessions at 2025-06-08 23:30:50 Session peak
- 45d6h24m14s Total duration of sessions
- 3m56s Average duration of sessions
- 3 Average queries per session
- 5s700ms Average queries duration per session
- 3m50s Average idle time per session
- 16,552 Total number of connections
- 55 connections/s at 2025-06-08 05:35:19 Connection peak
- 3 Total number of databases
SQL Traffic
Key values
- 9 queries/s Query Peak
- 2025-06-08 09:29:55 Date
SELECT Traffic
Key values
- 9 queries/s Query Peak
- 2025-06-08 09:29:55 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2025-06-08 10:25:40 Date
Queries duration
Key values
- 1d2h12m30s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 08 00 5,478 1s8ms 8m53s 1s627ms 3m16s 3m41s 11m56s 01 5,666 1s10ms 5m21s 1s636ms 3m9s 5m31s 7m21s 02 6,276 1s9ms 4m30s 1s576ms 3m25s 3m42s 6m43s 03 6,180 1s1ms 18m36s 1s782ms 3m23s 3m44s 21m18s 04 6,185 1s9ms 18m36s 1s716ms 3m26s 4m11s 20m53s 05 5,960 1s1ms 18m33s 1s701ms 3m17s 3m34s 21m16s 06 5,761 0ms 1m17s 1s613ms 3m48s 3m53s 5m10s 07 7 0ms 4s195ms 2s59ms 0ms 0ms 14s419ms 08 808 0ms 7s638ms 1s592ms 2m10s 3m18s 3m47s 09 5,937 1s22ms 4m17s 1s588ms 3m16s 3m45s 6m55s 10 3,210 1s17ms 1m17s 1s552ms 3m3s 3m24s 4m20s 11 147 0ms 3m35s 3s535ms 9s860ms 15s984ms 3m37s 12 84 0ms 6s911ms 2s76ms 7s151ms 10s860ms 14s487ms 13 63 0ms 18m8s 19s658ms 6s241ms 16s700ms 18m8s 14 134 0ms 1m16s 4s57ms 23s475ms 45s484ms 1m48s 15 120 0ms 5m20s 6s646ms 8s298ms 15s59ms 5m34s 16 81 0ms 17s637ms 2s452ms 8s197ms 11s467ms 22s512ms 17 72 0ms 28s737ms 3s712ms 12s694ms 28s610ms 57s266ms 18 124 0ms 1m17s 4s36ms 23s77ms 52s75ms 1m49s 19 150 0ms 4m32s 6s540ms 19s658ms 1m5s 4m58s 20 95 0ms 23s326ms 2s590ms 9s875ms 13s11ms 23s326ms 21 199 0ms 5m18s 4s89ms 17s609ms 29s308ms 5m38s 22 583 0ms 4m31s 4s60ms 1m18s 1m34s 5m5s 23 254 0ms 3m11s 3s229ms 26s440ms 40s968ms 3m49s Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 08 00 5,477 0 1s626ms 2m55s 3m16s 3m52s 01 5,661 0 1s635ms 2m49s 3m9s 6m6s 02 6,273 0 1s576ms 3m5s 3m25s 4m1s 03 6,176 0 1s781ms 3m9s 3m23s 6m14s 04 6,181 0 1s715ms 3m8s 3m26s 4m30s 05 5,953 0 1s700ms 3m10s 3m17s 3m42s 06 5,747 11 1s612ms 3m25s 3m44s 3m53s 07 7 0 2s59ms 0ms 0ms 0ms 08 806 0 1s590ms 0ms 2m10s 3m21s 09 5,936 0 1s587ms 3m3s 3m16s 5m46s 10 3,194 11 1s551ms 2m43s 3m2s 3m24s 11 144 0 3s554ms 7s917ms 9s860ms 41s342ms 12 83 0 2s77ms 4s413ms 7s151ms 13s699ms 13 59 0 20s848ms 4s166ms 6s241ms 17s223ms 14 123 11 4s57ms 12s537ms 23s475ms 45s484ms 15 119 0 6s686ms 5s866ms 8s298ms 4m18s 16 80 0 2s458ms 4s992ms 7s312ms 15s252ms 17 63 0 3s707ms 4s852ms 8s171ms 35s413ms 18 111 10 4s83ms 8s985ms 21s538ms 58s429ms 19 149 0 6s563ms 9s656ms 19s658ms 4m42s 20 95 0 2s590ms 7s680ms 9s875ms 16s682ms 21 198 0 4s99ms 12s993ms 17s609ms 29s366ms 22 582 0 4s61ms 56s903ms 1m18s 2m40s 23 252 0 3s242ms 16s307ms 26s440ms 1m5s Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 08 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Jun 08 00 0 5,701 5,701.00 0.00% 01 0 5,899 5,899.00 0.00% 02 0 6,546 6,546.00 0.00% 03 0 6,398 6,398.00 0.00% 04 0 6,419 6,419.00 0.00% 05 0 6,142 6,142.00 0.00% 06 0 5,970 5,970.00 0.00% 07 0 7 7.00 0.00% 08 0 825 825.00 0.00% 09 0 6,160 6,160.00 0.00% 10 0 3,305 3,305.00 0.00% 11 0 147 147.00 0.00% 12 0 84 84.00 0.00% 13 0 63 63.00 0.00% 14 0 123 123.00 0.00% 15 0 120 120.00 0.00% 16 0 81 81.00 0.00% 17 0 77 77.00 0.00% 18 0 118 118.00 0.00% 19 0 150 150.00 0.00% 20 0 95 95.00 0.00% 21 1 199 199.00 0.50% 22 0 583 583.00 0.00% 23 0 254 254.00 0.00% Day Hour Count Average / Second Jun 08 00 711 0.20/s 01 723 0.20/s 02 770 0.21/s 03 1,015 0.28/s 04 907 0.25/s 05 858 0.24/s 06 3,161 0.88/s 07 207 0.06/s 08 262 0.07/s 09 920 0.26/s 10 443 0.12/s 11 239 0.07/s 12 90 0.03/s 13 91 0.03/s 14 90 0.03/s 15 97 0.03/s 16 82 0.02/s 17 107 0.03/s 18 106 0.03/s 19 102 0.03/s 20 131 0.04/s 21 1,154 0.32/s 22 1,941 0.54/s 23 2,345 0.65/s Day Hour Count Average Duration Average idle time Jun 08 00 711 3m30s 3m17s 01 723 3m10s 2m57s 02 770 3m8s 2m55s 03 1,011 2m27s 2m16s 04 911 2m41s 2m29s 05 857 2m53s 2m41s 06 3,151 47s397ms 44s446ms 07 219 10m55s 10m54s 08 260 10m25s 10m20s 09 921 2m43s 2m33s 10 443 5m19s 5m7s 11 239 9m46s 9m44s 12 90 27m33s 27m31s 13 91 26m35s 26m22s 14 90 26m53s 26m47s 15 97 24m9s 24m1s 16 82 30m19s 30m17s 17 107 22m15s 22m13s 18 106 23m1s 22m56s 19 102 23m32s 23m22s 20 125 19m22s 19m21s 21 1,153 5m3s 5m2s 22 1,906 2m14s 2m13s 23 2,386 1m37s 1m37s -
Connections
Established Connections
Key values
- 55 connections Connection Peak
- 2025-06-08 05:35:19 Date
Connections per database
Key values
- ctdprd51 Main Database
- 16,552 connections Total
Connections per user
Key values
- pubeu Main User
- 16,552 connections Total
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Sessions
Simultaneous sessions
Key values
- 106 sessions Session Peak
- 2025-06-08 23:30:50 Date
Histogram of session times
Key values
- 6,559 1000-30000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 16,551 sessions Total
Sessions per user
Key values
- pubeu Main User
- 16,551 sessions Total
Sessions per host
Key values
- 10.12.5.37 Main Host
- 16,551 sessions Total
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Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 88,275 buffers Checkpoint Peak
- 2025-06-08 12:16:06 Date
- 1620.021 seconds Highest write time
- 0.014 seconds Sync time
Checkpoints Wal files
Key values
- 37 files Wal files usage Peak
- 2025-06-08 12:16:06 Date
Checkpoints distance
Key values
- 1,160.02 Mo Distance Peak
- 2025-06-08 12:16:06 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Jun 08 00 19,272 1,670.411s 0.004s 1,670.619s 01 2,310 231.57s 0.002s 231.614s 02 2,024 203.266s 0.002s 203.298s 03 4,010 402.77s 0.011s 402.837s 04 8,067 808.92s 0.015s 809.045s 05 5,945 595.978s 0.002s 596.079s 06 5,052 506.981s 0.002s 507.025s 07 608 61.098s 0.002s 61.127s 08 311 31.383s 0.003s 31.414s 09 2,221 223.122s 0.003s 223.155s 10 2,719 272.633s 0.002s 272.676s 11 826 82.623s 0.002s 82.638s 12 89,895 1,782.073s 0.006s 1,782.591s 13 3,795 380.206s 0.003s 380.236s 14 1,865 186.806s 0.004s 186.879s 15 2,101 210.445s 0.004s 210.519s 16 1,660 166.376s 0.003s 166.405s 17 2,541 254.401s 0.004s 254.483s 18 4,140 414.238s 0.004s 414.286s 19 1,811 181.381s 0.002s 181.459s 20 2,403 240.581s 0.003s 240.612s 21 3,637 366.315s 0.011s 366.485s 22 2,034 206.363s 0.01s 206.631s 23 2,707 271.582s 0.008s 271.632s Day Hour Added Removed Recycled Synced files Longest sync Average sync Jun 08 00 0 0 12 70 0.001s 0.002s 01 0 0 1 41 0.001s 0.002s 02 0 0 0 31 0.001s 0.002s 03 0 0 1 36 0.010s 0.002s 04 0 0 4 46 0.014s 0.002s 05 0 0 3 43 0.001s 0.002s 06 0 0 1 128 0.001s 0.002s 07 0 0 0 106 0.001s 0.002s 08 0 0 0 98 0.001s 0.002s 09 0 0 0 120 0.002s 0.002s 10 0 0 1 37 0.001s 0.002s 11 0 0 0 13 0.001s 0.001s 12 0 0 37 71 0.001s 0.003s 13 0 0 0 24 0.001s 0.002s 14 0 0 1 23 0.001s 0.002s 15 0 0 1 28 0.001s 0.002s 16 0 0 0 22 0.001s 0.002s 17 0 0 1 29 0.001s 0.002s 18 0 0 1 42 0.001s 0.002s 19 0 0 1 22 0.001s 0.002s 20 0 0 0 31 0.001s 0.002s 21 0 0 2 47 0.008s 0.002s 22 0 0 1 22 0.005s 0.002s 23 0 0 0 31 0.004s 0.002s Day Hour Count Avg time (sec) Jun 08 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Jun 08 00 101,111.00 kB 189,721.50 kB 01 3,149.50 kB 154,289.00 kB 02 2,760.00 kB 125,479.00 kB 03 4,760.00 kB 102,475.00 kB 04 34,160.00 kB 89,346.00 kB 05 23,155.00 kB 75,191.50 kB 06 7,019.50 kB 63,820.00 kB 07 1,669.50 kB 52,299.00 kB 08 1,132.00 kB 42,581.00 kB 09 3,739.50 kB 35,096.00 kB 10 4,083.50 kB 29,143.50 kB 11 3,399.00 kB 25,410.00 kB 12 200,636.00 kB 536,906.00 kB 13 4,475.50 kB 412,668.50 kB 14 4,238.00 kB 335,016.00 kB 15 5,302.00 kB 272,346.50 kB 16 4,584.00 kB 221,501.00 kB 17 5,676.50 kB 180,427.00 kB 18 8,744.50 kB 147,752.00 kB 19 5,530.50 kB 120,803.00 kB 20 6,700.50 kB 99,050.50 kB 21 11,415.00 kB 82,152.50 kB 22 6,294.00 kB 68,015.00 kB 23 5,114.00 kB 56,170.00 kB -
Temporary Files
Size of temporary files
Key values
- 9.02 MiB Temp Files size Peak
- 2025-06-08 00:08:55 Date
Number of temporary files
Key values
- 9 per second Temp Files Peak
- 2025-06-08 00:08:55 Date
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Jun 08 00 9 9.02 MiB 1.00 MiB 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 Queries generating the most temporary files (N)
Rank Count Total size Min size Max size Avg size Query 1 9 9.02 MiB 128.00 KiB 2.45 MiB 1.00 MiB vacuum full analyze log_query;-
VACUUM FULL ANALYZE log_query;
Date: 2025-06-08 00:08:55 Duration: 0ms
Queries generating the largest temporary files
Rank Size Query 1 2.45 MiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
2 2.09 MiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
3 2.07 MiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
4 1.07 MiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
5 496.00 KiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
6 424.00 KiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
7 176.00 KiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
8 152.00 KiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
9 128.00 KiB VACUUM FULL ANALYZE log_query;[ Date: 2025-06-08 00:08:55 ]
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Vacuums
Vacuums / Analyzes Distribution
Key values
- 8.50 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment_agent
Database ctdprd51 - 2025-06-08 11:46:24 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 8.50 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment_agent
Database ctdprd51 - 2025-06-08 11:46:24 Date
Analyzes per table
Key values
- pubc.log_query (12) Main table analyzed (database ctdprd51)
- 14 analyzes Total
Vacuums per table
Key values
- pubc.log_query (5) Main table vacuumed on database ctdprd51
- 7 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pubc.log_query 5 5 43,474 0 13,776 0 5,096 24,299 1,388 9,450,005 ctdprd51.pub1.term_set_enrichment_agent 1 0 108,764 0 34,512 0 0 54,374 3 3,232,879 ctdprd51.pg_toast.pg_toast_2619 1 1 2,980 0 2,197 0 9,792 3,696 1,195 708,395 Total 7 6 155,218 4,347 50,485 0 14,888 82,369 2,586 13,391,279 Tuples removed per table
Key values
- pubc.log_query (75077) Main table with removed tuples on database ctdprd51
- 79626 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Jun 08 00 1 0 01 0 1 02 0 1 03 1 1 04 0 1 05 0 0 06 1 1 07 0 0 08 0 0 09 0 0 10 1 1 11 1 2 12 1 1 13 0 0 14 0 1 15 0 0 16 0 0 17 0 1 18 1 1 19 0 0 20 0 1 21 0 0 22 0 1 23 0 0 - 8.50 sec Highest CPU-cost vacuum
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Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
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Queries
Queries by type
Key values
- 53,469 Total read queries
- 96 Total write queries
Queries by database
Key values
- unknown Main database
- 46,369 Requests
- 21h44m31s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 105,589 Requests
User Request type Count Duration postgres Total 9 6m37s copy to 9 6m37s pubeu Total 13,098 6h57m8s cte 22 56s458ms others 6 26s463ms select 13,070 6h55m45s qaeu Total 10 24s533ms cte 2 7s59ms select 8 17s474ms unknown Total 105,589 2d5h10m copy to 114 1h38m31s cte 104 4m24s others 3 9s732ms select 105,368 2d3h26m54s zbx_monitor Total 4 5s908ms select 4 5s908ms Duration by user
Key values
- 2d5h10m (unknown) Main time consuming user
User Request type Count Duration postgres Total 9 6m37s copy to 9 6m37s pubeu Total 13,098 6h57m8s cte 22 56s458ms others 6 26s463ms select 13,070 6h55m45s qaeu Total 10 24s533ms cte 2 7s59ms select 8 17s474ms unknown Total 105,589 2d5h10m copy to 114 1h38m31s cte 104 4m24s others 3 9s732ms select 105,368 2d3h26m54s zbx_monitor Total 4 5s908ms select 4 5s908ms Queries by host
Key values
- unknown Main host
- 118,710 Requests
- 2d12h14m16s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 53,566 Requests
- 1d2h5m57s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-06-08 06:42:55 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 55,318 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 18m36s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 04:03:40 - Bind query: yes ]
2 18m36s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 03:18:23 - Bind query: yes ]
3 18m33s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 05:35:52 - Bind query: yes ]
4 18m8s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 13:40:44 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
5 8m53s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-06-08 00:08:54 ]
6 5m21s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1273199') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 01:34:39 - Bind query: yes ]
7 5m20s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1273199') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 15:13:53 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
8 5m18s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1253165') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 21:06:30 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
9 4m32s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1248143') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 19:58:10 - Bind query: yes ]
10 4m31s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1270048') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 22:27:29 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
11 4m30s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1239467') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 02:44:51 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
12 4m27s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1264508') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 19:46:10 - Bind query: yes ]
13 4m18s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1253170') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 15:50:28 - Bind query: yes ]
14 4m17s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1265466') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 09:31:30 - Bind query: yes ]
15 3m54s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1265557') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 09:15:49 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
16 3m35s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1245258') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 11:37:24 - Bind query: yes ]
17 3m24s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1271536') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 01:42:30 - Bind query: yes ]
18 3m24s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1271536') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 03:52:49 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
19 3m11s SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1244989') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;[ Date: 2025-06-08 01:06:00 - Bind query: yes ]
20 3m11s SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;[ Date: 2025-06-08 23:21:45 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 19h32m15s 47,479 1s311ms 3s891ms 1s481ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 08 00 5,041 2h5m7s 1s489ms 01 5,250 2h9m35s 1s480ms 02 5,807 2h23m34s 1s483ms 03 5,655 2h20m32s 1s491ms 04 5,697 2h20m10s 1s476ms 05 5,469 2h13m7s 1s460ms 06 5,275 2h13m48s 1s521ms 07 5 8s446ms 1s689ms 08 712 17m58s 1s514ms 09 5,521 2h15m5s 1s468ms 10 2,902 1h9m24s 1s434ms 11 15 20s936ms 1s395ms 12 6 8s421ms 1s403ms 13 6 8s160ms 1s360ms 14 9 12s925ms 1s436ms 15 12 17s276ms 1s439ms 16 11 15s402ms 1s400ms 17 8 11s103ms 1s387ms 18 9 12s955ms 1s439ms 19 12 17s224ms 1s435ms 20 18 25s516ms 1s417ms 21 14 25s391ms 1s813ms 22 13 28s276ms 2s175ms 23 12 20s869ms 1s739ms [ User: pubeu - Total duration: 2h30m13s - Times executed: 5873 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-06-08 06:31:28 Duration: 3s891ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-06-08 06:31:51 Duration: 3s886ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-06-08 06:31:50 Duration: 3s805ms Bind query: yes
2 2h16m23s 58 1s209ms 18m36s 2m21s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 08 00 4 7s209ms 1s802ms 01 5 12m3s 2m24s 02 2 4m33s 2m16s 03 4 22m52s 5m43s 04 3 18m40s 6m13s 05 2 18m34s 9m17s 06 3 5s99ms 1s699ms 09 3 8m13s 2m44s 10 2 6s705ms 3s352ms 11 2 3m38s 1m49s 12 3 5s837ms 1s945ms 13 3 18m13s 6m4s 14 2 4s144ms 2s72ms 15 5 9m43s 1m56s 16 2 4s68ms 2s34ms 17 2 5s168ms 2s584ms 18 1 3s347ms 3s347ms 19 5 9m7s 1m49s 20 1 2s491ms 2s491ms 21 2 5m20s 2m40s 22 1 4m31s 4m31s 23 1 5s621ms 5s621ms [ User: pubeu - Total duration: 45m21s - Times executed: 12 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 04:03:40 Duration: 18m36s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 03:18:23 Duration: 18m36s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 05:35:52 Duration: 18m33s Bind query: yes
3 44m30s 1,693 1s317ms 2s845ms 1s577ms select ;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 08 00 198 5m18s 1s607ms 01 200 5m18s 1s591ms 02 242 6m27s 1s602ms 03 196 5m8s 1s575ms 04 228 5m57s 1s567ms 05 170 4m26s 1s567ms 06 169 4m26s 1s577ms 08 16 25s308ms 1s581ms 09 176 4m32s 1s546ms 10 98 2m29s 1s524ms [ User: pubeu - Total duration: 4m22s - Times executed: 164 ]
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:33:47 Duration: 2s845ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:33:46 Duration: 2s472ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:54:02 Duration: 2s69ms Database: ctdprd51 User: pubeu Bind query: yes
4 18m40s 742 1s194ms 6s757ms 1s510ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 08 00 47 1m2s 1s333ms 01 39 51s924ms 1s331ms 02 26 34s252ms 1s317ms 03 53 1m11s 1s341ms 04 44 59s421ms 1s350ms 05 34 45s163ms 1s328ms 06 37 51s571ms 1s393ms 08 9 12s741ms 1s415ms 09 52 1m9s 1s337ms 10 24 30s645ms 1s276ms 11 51 1m4s 1s267ms 12 23 29s705ms 1s291ms 13 3 3s833ms 1s277ms 14 41 53s311ms 1s300ms 15 43 55s467ms 1s289ms 16 16 20s486ms 1s280ms 17 5 6s347ms 1s269ms 18 36 45s614ms 1s267ms 19 50 1m4s 1s293ms 20 14 18s474ms 1s319ms 21 13 21s66ms 1s620ms 22 47 2m44s 3s504ms 23 35 1m23s 2s383ms [ User: pubeu - Total duration: 5m14s - Times executed: 166 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1517159' or receptorTerm.id = '1517159' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:29:15 Duration: 6s757ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1499154' or receptorTerm.id = '1499154' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:26:00 Duration: 6s389ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1712394' or receptorTerm.id = '1712394' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:25:10 Duration: 6s147ms Database: ctdprd51 User: pubeu Bind query: yes
5 14m40s 207 1s28ms 20s680ms 4s252ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 08 00 19 1m27s 4s600ms 01 22 1m36s 4s407ms 02 22 1m38s 4s467ms 03 24 1m52s 4s671ms 04 21 1m33s 4s459ms 05 27 1m42s 3s806ms 06 23 1m27s 3s793ms 08 1 1s420ms 1s420ms 09 18 1m9s 3s878ms 10 9 36s242ms 4s26ms 11 2 9s190ms 4s595ms 13 1 1s183ms 1s183ms 14 1 1s28ms 1s28ms 15 1 1s70ms 1s70ms 16 1 7s312ms 7s312ms 17 1 9s116ms 9s116ms 18 1 1s464ms 1s464ms 19 1 13s892ms 13s892ms 20 1 4s926ms 4s926ms 21 2 2s119ms 1s59ms 22 4 29s453ms 7s363ms 23 5 13s571ms 2s714ms [ User: pubeu - Total duration: 1m39s - Times executed: 25 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105180') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:36:36 Duration: 20s680ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2100109') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 03:06:45 Duration: 13s895ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2096169') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 19:12:20 Duration: 13s892ms Bind query: yes
6 14m31s 39 1s320ms 1m14s 22s341ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 08 00 3 51s340ms 17s113ms 03 9 2m48s 18s727ms 04 2 42s226ms 21s113ms 06 3 1m1s 20s619ms 09 3 55s920ms 18s640ms 11 1 1s320ms 1s320ms 14 7 2m9s 18s559ms 18 6 1m52s 18s727ms 19 2 34s153ms 17s76ms 22 3 3m33s 1m11s [ User: pubeu - Total duration: 6m6s - Times executed: 12 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2102635') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:15:57 Duration: 1m14s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2102635') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:16:13 Duration: 1m13s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2102635') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:16:21 Duration: 1m5s Database: ctdprd51 User: pubeu Bind query: yes
7 13m53s 264 1s1ms 9s790ms 3s155ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 08 00 15 48s119ms 3s207ms 01 8 16s334ms 2s41ms 02 18 59s153ms 3s286ms 03 16 38s789ms 2s424ms 04 17 58s257ms 3s426ms 05 35 1m36s 2s751ms 06 22 1m7s 3s68ms 08 1 1s44ms 1s44ms 09 5 10s761ms 2s152ms 10 12 37s301ms 3s108ms 11 10 38s105ms 3s810ms 12 9 30s749ms 3s416ms 13 9 37s357ms 4s150ms 14 15 57s936ms 3s862ms 15 7 20s685ms 2s955ms 16 9 27s774ms 3s86ms 17 4 12s800ms 3s200ms 18 6 17s289ms 2s881ms 19 10 26s200ms 2s620ms 20 9 32s103ms 3s567ms 21 15 54s757ms 3s650ms 22 7 29s543ms 4s220ms 23 5 14s273ms 2s854ms [ User: pubeu - Total duration: 3m13s - Times executed: 58 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:19:20 Duration: 9s790ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:08:10 Duration: 7s826ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 22:08:10 Duration: 7s480ms Bind query: yes
8 12m34s 472 1s514ms 3s98ms 1s598ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 08 00 28 44s379ms 1s584ms 01 25 39s231ms 1s569ms 02 37 58s549ms 1s582ms 03 57 1m30s 1s588ms 04 47 1m15s 1s606ms 05 48 1m16s 1s590ms 06 53 1m25s 1s604ms 07 1 1s777ms 1s777ms 08 9 14s421ms 1s602ms 09 57 1m30s 1s595ms 10 57 1m29s 1s565ms 11 4 6s137ms 1s534ms 12 1 1s528ms 1s528ms 13 4 6s156ms 1s539ms 14 4 6s302ms 1s575ms 15 4 6s185ms 1s546ms 16 7 10s740ms 1s534ms 17 4 6s247ms 1s561ms 18 1 1s524ms 1s524ms 19 6 9s238ms 1s539ms 20 5 7s682ms 1s536ms 21 4 7s323ms 1s830ms 22 4 10s726ms 2s681ms 23 5 8s572ms 1s714ms [ User: pubeu - Total duration: 1m29s - Times executed: 52 ]
[ User: qaeu - Total duration: 1s538ms - Times executed: 1 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:24:38 Duration: 3s98ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:52:42 Duration: 2s881ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:35:31 Duration: 2s670ms Database: ctdprd51 User: pubeu Bind query: yes
9 12m21s 92 1s82ms 31s352ms 8s58ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 08 00 2 3s611ms 1s805ms 01 4 25s180ms 6s295ms 02 6 1m1s 10s195ms 03 9 51s70ms 5s674ms 04 7 1m 8s675ms 05 9 1m14s 8s255ms 06 6 37s458ms 6s243ms 09 4 1m8s 17s15ms 10 7 1m17s 11s80ms 11 1 22s867ms 22s867ms 12 3 6s106ms 2s35ms 13 3 11s610ms 3s870ms 14 3 26s180ms 8s726ms 16 7 38s337ms 5s476ms 17 1 3s694ms 3s694ms 18 5 18s512ms 3s702ms 19 3 6s770ms 2s256ms 20 3 26s306ms 8s768ms 21 3 33s463ms 11s154ms 22 5 1m26s 17s342ms 23 1 1s623ms 1s623ms [ User: pubeu - Total duration: 2m57s - Times executed: 20 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1265161') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 22:11:29 Duration: 31s352ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1234207') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 09:20:26 Duration: 28s759ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1234207') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 04:39:27 Duration: 26s751ms Bind query: yes
10 11m15s 257 1s8ms 15s105ms 2s628ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 08 00 17 39s498ms 2s323ms 01 10 21s258ms 2s125ms 02 10 34s170ms 3s417ms 03 11 30s956ms 2s814ms 04 10 21s843ms 2s184ms 05 33 1m15s 2s286ms 06 30 1m12s 2s418ms 08 2 5s668ms 2s834ms 09 6 12s159ms 2s26ms 10 12 26s648ms 2s220ms 11 11 25s145ms 2s285ms 12 11 22s847ms 2s77ms 13 10 23s326ms 2s332ms 14 7 15s198ms 2s171ms 15 13 34s529ms 2s656ms 16 8 24s43ms 3s5ms 17 3 10s708ms 3s569ms 18 5 13s576ms 2s715ms 19 6 15s756ms 2s626ms 20 11 28s217ms 2s565ms 21 13 37s257ms 2s865ms 22 10 1m2s 6s291ms 23 8 21s665ms 2s708ms [ User: pubeu - Total duration: 2m38s - Times executed: 50 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:25:40 Duration: 15s105ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1449732') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1449732') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:33:43 Duration: 11s277ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:52:52 Duration: 11s216ms Database: ctdprd51 User: pubeu Bind query: yes
11 10m25s 212 1s7ms 6s892ms 2s950ms select * from ( select g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, count(*) over () fullrowcount from term g where g.id in ( select gt.gene_id from dag_path dp inner join gene_taxon gt on dp.descendant_object_id = gt.taxon_id where dp.ancestor_object_id = ? union all select gcr.gene_id from dag_path dp inner join gene_chem_reference gcr on dp.descendant_object_id = gcr.taxon_id where dp.ancestor_object_id = ?) offset ?) mq order by mq.genesymbolsort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 08 00 3 7s87ms 2s362ms 01 1 1s859ms 1s859ms 02 6 17s783ms 2s963ms 03 10 31s344ms 3s134ms 04 4 16s370ms 4s92ms 05 2 4s158ms 2s79ms 06 4 17s850ms 4s462ms 09 4 13s550ms 3s387ms 10 5 13s123ms 2s624ms 11 3 9s971ms 3s323ms 12 8 28s421ms 3s552ms 13 1 3s868ms 3s868ms 14 10 21s441ms 2s144ms 15 7 17s53ms 2s436ms 16 1 2s869ms 2s869ms 17 3 7s208ms 2s402ms 18 3 5s16ms 1s672ms 19 6 13s604ms 2s267ms 20 9 24s678ms 2s742ms 21 7 20s40ms 2s862ms 22 76 4m8s 3s270ms 23 39 1m39s 2s554ms [ User: pubeu - Total duration: 5m16s - Times executed: 111 ]
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '156933' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '156933') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 22:21:15 Duration: 6s892ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '660706' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '660706') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 06:17:19 Duration: 6s638ms Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '660706' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '660706') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 03:56:33 Duration: 6s569ms Bind query: yes
12 8m53s 1 8m53s 8m53s 8m53s select maint_query_logs_archive ();Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 08 00 1 8m53s 8m53s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-06-08 00:08:54 Duration: 8m53s
13 8m27s 72 1s26ms 3m11s 7s50ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 08 06 24 2m4s 5s201ms 07 1 4s195ms 4s195ms 09 11 13s954ms 1s268ms 11 10 16s364ms 1s636ms 12 1 2s688ms 2s688ms 13 3 6s338ms 2s112ms 21 1 1s26ms 1s26ms 22 15 1m44s 6s961ms 23 6 3m53s 38s967ms [ User: pubeu - Total duration: 5m44s - Times executed: 32 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 23:21:45 Duration: 3m11s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2099568') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 23:50:22 Duration: 18s451ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 22:57:33 Duration: 14s16ms Bind query: yes
14 6m57s 72 1s49ms 32s848ms 5s801ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where phenotypeterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and associatedterm.object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 08 00 3 24s769ms 8s256ms 01 2 18s768ms 9s384ms 02 3 22s196ms 7s398ms 03 4 11s788ms 2s947ms 04 5 6s222ms 1s244ms 05 2 2s249ms 1s124ms 06 4 22s586ms 5s646ms 09 7 21s353ms 3s50ms 10 2 20s333ms 10s166ms 11 3 23s297ms 7s765ms 12 1 1s309ms 1s309ms 13 3 9s47ms 3s15ms 14 1 1s162ms 1s162ms 15 3 8s393ms 2s797ms 16 3 18s127ms 6s42ms 17 2 6s99ms 3s49ms 18 3 24s475ms 8s158ms 19 3 35s50ms 11s683ms 20 3 32s661ms 10s887ms 21 5 40s514ms 8s102ms 22 8 51s148ms 6s393ms 23 2 16s152ms 8s76ms [ User: pubeu - Total duration: 1m29s - Times executed: 14 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 22:24:57 Duration: 32s848ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:06:26 Duration: 19s481ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 11:44:17 Duration: 18s475ms Bind query: yes
15 6m42s 80 4s174ms 16s31ms 5s32ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 08 01 1 4s865ms 4s865ms 02 23 1m47s 4s679ms 03 23 1m51s 4s842ms 04 13 1m 4s666ms 09 2 10s54ms 5s27ms 10 11 50s612ms 4s601ms 13 1 4s389ms 4s389ms 15 2 8s934ms 4s467ms 21 1 12s87ms 12s87ms 22 1 16s31ms 16s31ms 23 2 15s996ms 7s998ms [ User: pubeu - Total duration: 1m36s - Times executed: 15 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1302273') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1302273') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 22:43:04 Duration: 16s31ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1352740') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1352740') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 21:10:37 Duration: 12s87ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1367139') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1367139') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 23:35:37 Duration: 11s433ms Database: ctdprd51 User: pubeu Bind query: yes
16 5m9s 4 1m16s 1m17s 1m17s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 08 06 1 1m17s 1m17s 10 1 1m17s 1m17s 14 1 1m16s 1m16s 18 1 1m17s 1m17s [ User: postgres - Total duration: 5m9s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 5m9s - Times executed: 4 ]
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-06-08 06:06:19 Duration: 1m17s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-06-08 10:06:20 Duration: 1m17s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-06-08 18:06:19 Duration: 1m17s Database: ctdprd51 User: postgres Application: pg_dump
17 3m54s 54 1s23ms 9s780ms 4s335ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 08 00 3 12s462ms 4s154ms 02 2 11s807ms 5s903ms 04 1 6s536ms 6s536ms 05 16 52s803ms 3s300ms 06 7 32s936ms 4s705ms 08 6 6s730ms 1s121ms 09 2 11s461ms 5s730ms 10 1 1s278ms 1s278ms 11 2 9s933ms 4s966ms 12 1 4s849ms 4s849ms 13 2 5s746ms 2s873ms 15 3 14s875ms 4s958ms 16 1 4s875ms 4s875ms 18 1 4s860ms 4s860ms 21 2 17s934ms 8s967ms 22 3 27s887ms 9s295ms 23 1 7s128ms 7s128ms [ User: pubeu - Total duration: 1m10s - Times executed: 11 ]
[ User: qaeu - Total duration: 1s173ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1299718' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-06-08 22:43:48 Duration: 9s780ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1414209' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-06-08 21:20:28 Duration: 9s621ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1326390' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-06-08 22:17:57 Duration: 9s445ms Database: ctdprd51 User: pubeu Bind query: yes
18 3m20s 7 28s401ms 28s783ms 28s580ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 08 17 4 1m54s 28s574ms 19 3 1m25s 28s587ms [ User: pubeu - Total duration: 57s393ms - Times executed: 2 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,0') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,0') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE ',0')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE ',0')) ii GROUP BY ii.cd;
Date: 2025-06-08 19:14:47 Duration: 28s783ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,6') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,6') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE ',6')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE ',6')) ii GROUP BY ii.cd;
Date: 2025-06-08 17:09:23 Duration: 28s737ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,15') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,15') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE ',15')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE ',15')) ii GROUP BY ii.cd;
Date: 2025-06-08 17:08:59 Duration: 28s610ms Database: ctdprd51 User: pubeu Bind query: yes
19 2m50s 67 1s29ms 5s170ms 2s546ms select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 08 03 1 1s576ms 1s576ms 04 1 1s188ms 1s188ms 06 1 1s232ms 1s232ms 21 6 13s283ms 2s213ms 22 39 1m45s 2s712ms 23 19 47s551ms 2s502ms [ User: pubeu - Total duration: 1m34s - Times executed: 38 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2100257');
Date: 2025-06-08 22:25:08 Duration: 5s170ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105180');
Date: 2025-06-08 22:36:41 Duration: 4s758ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2106535');
Date: 2025-06-08 22:29:26 Duration: 4s206ms Database: ctdprd51 User: pubeu Bind query: yes
20 2m49s 102 1s49ms 3s149ms 1s658ms select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 08 00 9 16s72ms 1s785ms 01 4 6s509ms 1s627ms 02 4 5s928ms 1s482ms 03 3 4s98ms 1s366ms 04 4 7s221ms 1s805ms 05 11 17s400ms 1s581ms 06 6 10s786ms 1s797ms 09 4 7s361ms 1s840ms 10 4 6s388ms 1s597ms 11 3 4s513ms 1s504ms 12 1 1s816ms 1s816ms 13 4 6s794ms 1s698ms 14 4 6s852ms 1s713ms 15 4 6s877ms 1s719ms 16 4 7s553ms 1s888ms 17 3 4s463ms 1s487ms 18 3 4s421ms 1s473ms 19 4 5s129ms 1s282ms 20 5 8s608ms 1s721ms 21 4 7s811ms 1s952ms 22 10 14s533ms 1s453ms 23 4 8s35ms 2s8ms [ User: pubeu - Total duration: 42s593ms - Times executed: 25 ]
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 22:08:30 Duration: 3s149ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1451243') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 23:05:02 Duration: 2s779ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 21:26:18 Duration: 2s557ms Database: ctdprd51 User: pubeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 47,479 19h32m15s 1s311ms 3s891ms 1s481ms select t.nm, t.nm_html nmhtml, t.secondary_nm secondarynm, t.acc_txt acc, ? || t.nm accquerystr, t.has_chems haschems, t.has_diseases hasdiseases, t.has_exposures hasexposures, t.has_phenotypes hasphenotypes, count(*) over () fullrowcount from term t where t.object_type_id = ? and regexp_replace(upper(substring(t.nm, ?, ?)), ?, ?) = ? order by t.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 08 00 5,041 2h5m7s 1s489ms 01 5,250 2h9m35s 1s480ms 02 5,807 2h23m34s 1s483ms 03 5,655 2h20m32s 1s491ms 04 5,697 2h20m10s 1s476ms 05 5,469 2h13m7s 1s460ms 06 5,275 2h13m48s 1s521ms 07 5 8s446ms 1s689ms 08 712 17m58s 1s514ms 09 5,521 2h15m5s 1s468ms 10 2,902 1h9m24s 1s434ms 11 15 20s936ms 1s395ms 12 6 8s421ms 1s403ms 13 6 8s160ms 1s360ms 14 9 12s925ms 1s436ms 15 12 17s276ms 1s439ms 16 11 15s402ms 1s400ms 17 8 11s103ms 1s387ms 18 9 12s955ms 1s439ms 19 12 17s224ms 1s435ms 20 18 25s516ms 1s417ms 21 14 25s391ms 1s813ms 22 13 28s276ms 2s175ms 23 12 20s869ms 1s739ms [ User: pubeu - Total duration: 2h30m13s - Times executed: 5873 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-06-08 06:31:28 Duration: 3s891ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-06-08 06:31:51 Duration: 3s886ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm, t.nm_html nmHtml, t.secondary_nm secondaryNm, t.acc_txt acc, 'name:' || t.nm accQueryStr, t.has_chems hasChems, t.has_diseases hasDiseases, t.has_exposures hasExposures, t.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term t WHERE t.object_type_id = '4' AND REGEXP_REPLACE(UPPER(SUBSTRING(t.nm, 1, 1)), '[^A-Z]', '#') = 'A' ORDER BY t.nm_sort LIMIT 100;
Date: 2025-06-08 06:31:50 Duration: 3s805ms Bind query: yes
2 1,693 44m30s 1s317ms 2s845ms 1s577ms select ;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 08 00 198 5m18s 1s607ms 01 200 5m18s 1s591ms 02 242 6m27s 1s602ms 03 196 5m8s 1s575ms 04 228 5m57s 1s567ms 05 170 4m26s 1s567ms 06 169 4m26s 1s577ms 08 16 25s308ms 1s581ms 09 176 4m32s 1s546ms 10 98 2m29s 1s524ms [ User: pubeu - Total duration: 4m22s - Times executed: 164 ]
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:33:47 Duration: 2s845ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:33:46 Duration: 2s472ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:54:02 Duration: 2s69ms Database: ctdprd51 User: pubeu Bind query: yes
3 742 18m40s 1s194ms 6s757ms 1s510ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where exposuremarkerterm.id = ? or receptorterm.id = ? group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 08 00 47 1m2s 1s333ms 01 39 51s924ms 1s331ms 02 26 34s252ms 1s317ms 03 53 1m11s 1s341ms 04 44 59s421ms 1s350ms 05 34 45s163ms 1s328ms 06 37 51s571ms 1s393ms 08 9 12s741ms 1s415ms 09 52 1m9s 1s337ms 10 24 30s645ms 1s276ms 11 51 1m4s 1s267ms 12 23 29s705ms 1s291ms 13 3 3s833ms 1s277ms 14 41 53s311ms 1s300ms 15 43 55s467ms 1s289ms 16 16 20s486ms 1s280ms 17 5 6s347ms 1s269ms 18 36 45s614ms 1s267ms 19 50 1m4s 1s293ms 20 14 18s474ms 1s319ms 21 13 21s66ms 1s620ms 22 47 2m44s 3s504ms 23 35 1m23s 2s383ms [ User: pubeu - Total duration: 5m14s - Times executed: 166 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1517159' or receptorTerm.id = '1517159' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:29:15 Duration: 6s757ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1499154' or receptorTerm.id = '1499154' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:26:00 Duration: 6s389ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = '1712394' or receptorTerm.id = '1712394' GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:25:10 Duration: 6s147ms Database: ctdprd51 User: pubeu Bind query: yes
4 472 12m34s 1s514ms 3s98ms 1s598ms select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 08 00 28 44s379ms 1s584ms 01 25 39s231ms 1s569ms 02 37 58s549ms 1s582ms 03 57 1m30s 1s588ms 04 47 1m15s 1s606ms 05 48 1m16s 1s590ms 06 53 1m25s 1s604ms 07 1 1s777ms 1s777ms 08 9 14s421ms 1s602ms 09 57 1m30s 1s595ms 10 57 1m29s 1s565ms 11 4 6s137ms 1s534ms 12 1 1s528ms 1s528ms 13 4 6s156ms 1s539ms 14 4 6s302ms 1s575ms 15 4 6s185ms 1s546ms 16 7 10s740ms 1s534ms 17 4 6s247ms 1s561ms 18 1 1s524ms 1s524ms 19 6 9s238ms 1s539ms 20 5 7s682ms 1s536ms 21 4 7s323ms 1s830ms 22 4 10s726ms 2s681ms 23 5 8s572ms 1s714ms [ User: pubeu - Total duration: 1m29s - Times executed: 52 ]
[ User: qaeu - Total duration: 1s538ms - Times executed: 1 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:24:38 Duration: 3s98ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:52:42 Duration: 2s881ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:35:31 Duration: 2s670ms Database: ctdprd51 User: pubeu Bind query: yes
5 264 13m53s 1s1ms 9s790ms 3s155ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 08 00 15 48s119ms 3s207ms 01 8 16s334ms 2s41ms 02 18 59s153ms 3s286ms 03 16 38s789ms 2s424ms 04 17 58s257ms 3s426ms 05 35 1m36s 2s751ms 06 22 1m7s 3s68ms 08 1 1s44ms 1s44ms 09 5 10s761ms 2s152ms 10 12 37s301ms 3s108ms 11 10 38s105ms 3s810ms 12 9 30s749ms 3s416ms 13 9 37s357ms 4s150ms 14 15 57s936ms 3s862ms 15 7 20s685ms 2s955ms 16 9 27s774ms 3s86ms 17 4 12s800ms 3s200ms 18 6 17s289ms 2s881ms 19 10 26s200ms 2s620ms 20 9 32s103ms 3s567ms 21 15 54s757ms 3s650ms 22 7 29s543ms 4s220ms 23 5 14s273ms 2s854ms [ User: pubeu - Total duration: 3m13s - Times executed: 58 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:19:20 Duration: 9s790ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:08:10 Duration: 7s826ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 22:08:10 Duration: 7s480ms Bind query: yes
6 257 11m15s 1s8ms 15s105ms 2s628ms select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 08 00 17 39s498ms 2s323ms 01 10 21s258ms 2s125ms 02 10 34s170ms 3s417ms 03 11 30s956ms 2s814ms 04 10 21s843ms 2s184ms 05 33 1m15s 2s286ms 06 30 1m12s 2s418ms 08 2 5s668ms 2s834ms 09 6 12s159ms 2s26ms 10 12 26s648ms 2s220ms 11 11 25s145ms 2s285ms 12 11 22s847ms 2s77ms 13 10 23s326ms 2s332ms 14 7 15s198ms 2s171ms 15 13 34s529ms 2s656ms 16 8 24s43ms 3s5ms 17 3 10s708ms 3s569ms 18 5 13s576ms 2s715ms 19 6 15s756ms 2s626ms 20 11 28s217ms 2s565ms 21 13 37s257ms 2s865ms 22 10 1m2s 6s291ms 23 8 21s665ms 2s708ms [ User: pubeu - Total duration: 2m38s - Times executed: 50 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:25:40 Duration: 15s105ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1449732') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1449732') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:33:43 Duration: 11s277ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:52:52 Duration: 11s216ms Database: ctdprd51 User: pubeu Bind query: yes
7 212 10m25s 1s7ms 6s892ms 2s950ms select * from ( select g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, count(*) over () fullrowcount from term g where g.id in ( select gt.gene_id from dag_path dp inner join gene_taxon gt on dp.descendant_object_id = gt.taxon_id where dp.ancestor_object_id = ? union all select gcr.gene_id from dag_path dp inner join gene_chem_reference gcr on dp.descendant_object_id = gcr.taxon_id where dp.ancestor_object_id = ?) offset ?) mq order by mq.genesymbolsort limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 08 00 3 7s87ms 2s362ms 01 1 1s859ms 1s859ms 02 6 17s783ms 2s963ms 03 10 31s344ms 3s134ms 04 4 16s370ms 4s92ms 05 2 4s158ms 2s79ms 06 4 17s850ms 4s462ms 09 4 13s550ms 3s387ms 10 5 13s123ms 2s624ms 11 3 9s971ms 3s323ms 12 8 28s421ms 3s552ms 13 1 3s868ms 3s868ms 14 10 21s441ms 2s144ms 15 7 17s53ms 2s436ms 16 1 2s869ms 2s869ms 17 3 7s208ms 2s402ms 18 3 5s16ms 1s672ms 19 6 13s604ms 2s267ms 20 9 24s678ms 2s742ms 21 7 20s40ms 2s862ms 22 76 4m8s 3s270ms 23 39 1m39s 2s554ms [ User: pubeu - Total duration: 5m16s - Times executed: 111 ]
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '156933' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '156933') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 22:21:15 Duration: 6s892ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '660706' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '660706') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 06:17:19 Duration: 6s638ms Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '660706' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '660706') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 03:56:33 Duration: 6s569ms Bind query: yes
8 207 14m40s 1s28ms 20s680ms 4s252ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 08 00 19 1m27s 4s600ms 01 22 1m36s 4s407ms 02 22 1m38s 4s467ms 03 24 1m52s 4s671ms 04 21 1m33s 4s459ms 05 27 1m42s 3s806ms 06 23 1m27s 3s793ms 08 1 1s420ms 1s420ms 09 18 1m9s 3s878ms 10 9 36s242ms 4s26ms 11 2 9s190ms 4s595ms 13 1 1s183ms 1s183ms 14 1 1s28ms 1s28ms 15 1 1s70ms 1s70ms 16 1 7s312ms 7s312ms 17 1 9s116ms 9s116ms 18 1 1s464ms 1s464ms 19 1 13s892ms 13s892ms 20 1 4s926ms 4s926ms 21 2 2s119ms 1s59ms 22 4 29s453ms 7s363ms 23 5 13s571ms 2s714ms [ User: pubeu - Total duration: 1m39s - Times executed: 25 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105180') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:36:36 Duration: 20s680ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2100109') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 03:06:45 Duration: 13s895ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2096169') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 19:12:20 Duration: 13s892ms Bind query: yes
9 102 2m49s 1s49ms 3s149ms 1s658ms select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 08 00 9 16s72ms 1s785ms 01 4 6s509ms 1s627ms 02 4 5s928ms 1s482ms 03 3 4s98ms 1s366ms 04 4 7s221ms 1s805ms 05 11 17s400ms 1s581ms 06 6 10s786ms 1s797ms 09 4 7s361ms 1s840ms 10 4 6s388ms 1s597ms 11 3 4s513ms 1s504ms 12 1 1s816ms 1s816ms 13 4 6s794ms 1s698ms 14 4 6s852ms 1s713ms 15 4 6s877ms 1s719ms 16 4 7s553ms 1s888ms 17 3 4s463ms 1s487ms 18 3 4s421ms 1s473ms 19 4 5s129ms 1s282ms 20 5 8s608ms 1s721ms 21 4 7s811ms 1s952ms 22 10 14s533ms 1s453ms 23 4 8s35ms 2s8ms [ User: pubeu - Total duration: 42s593ms - Times executed: 25 ]
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 22:08:30 Duration: 3s149ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1451243') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 23:05:02 Duration: 2s779ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 21:26:18 Duration: 2s557ms Database: ctdprd51 User: pubeu Bind query: yes
10 102 2m11s 1s3ms 1s987ms 1s290ms select i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.iscurated, i.pub_start_yr yr, count(*) over () fullrowcount from ( select r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.pub_start_yr, r.sort_txt from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) union select r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.pub_start_yr, r.sort_txt from reference r where r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?) union select r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.pub_start_yr, r.sort_txt from reference r where r.id in ( select l.object_id from db_link l where l.type_cd = ? and l.object_type_id = ? and (upper(l.acc_txt) = ?)) order by ?) i limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 08 21 26 27s859ms 1s71ms 22 76 1m43s 1s365ms [ User: pubeu - Total duration: 1m13s - Times executed: 59 ]
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SELECT /* ReferenceBasicQueryDAO */ i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.isCurated, i.pub_start_yr yr, COUNT(*) OVER () fullRowCount FROM ( SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper(l.acc_txt) = '1')) ORDER BY 9) i LIMIT 50;
Date: 2025-06-08 22:34:26 Duration: 1s987ms Bind query: yes
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SELECT /* ReferenceBasicQueryDAO */ i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.isCurated, i.pub_start_yr yr, COUNT(*) OVER () fullRowCount FROM ( SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper(l.acc_txt) = '1')) ORDER BY 9) i LIMIT 50;
Date: 2025-06-08 22:29:55 Duration: 1s939ms Bind query: yes
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SELECT /* ReferenceBasicQueryDAO */ i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.isCurated, i.pub_start_yr yr, COUNT(*) OVER () fullRowCount FROM ( SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper(l.acc_txt) = '1')) ORDER BY 9) i LIMIT 50;
Date: 2025-06-08 22:35:57 Duration: 1s860ms Bind query: yes
11 92 12m21s 1s82ms 31s352ms 8s58ms select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 08 00 2 3s611ms 1s805ms 01 4 25s180ms 6s295ms 02 6 1m1s 10s195ms 03 9 51s70ms 5s674ms 04 7 1m 8s675ms 05 9 1m14s 8s255ms 06 6 37s458ms 6s243ms 09 4 1m8s 17s15ms 10 7 1m17s 11s80ms 11 1 22s867ms 22s867ms 12 3 6s106ms 2s35ms 13 3 11s610ms 3s870ms 14 3 26s180ms 8s726ms 16 7 38s337ms 5s476ms 17 1 3s694ms 3s694ms 18 5 18s512ms 3s702ms 19 3 6s770ms 2s256ms 20 3 26s306ms 8s768ms 21 3 33s463ms 11s154ms 22 5 1m26s 17s342ms 23 1 1s623ms 1s623ms [ User: pubeu - Total duration: 2m57s - Times executed: 20 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1265161') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 22:11:29 Duration: 31s352ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1234207') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 09:20:26 Duration: 28s759ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1234207') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 04:39:27 Duration: 26s751ms Bind query: yes
12 88 2m27s 1s327ms 5s303ms 1s678ms select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 08 00 7 10s248ms 1s464ms 01 1 1s400ms 1s400ms 03 8 11s891ms 1s486ms 04 5 7s453ms 1s490ms 05 5 7s452ms 1s490ms 06 9 13s882ms 1s542ms 08 4 6s179ms 1s544ms 09 8 12s128ms 1s516ms 10 3 4s491ms 1s497ms 11 3 4s211ms 1s403ms 12 1 1s461ms 1s461ms 13 3 4s282ms 1s427ms 14 2 2s936ms 1s468ms 15 3 4s308ms 1s436ms 16 3 4s284ms 1s428ms 17 1 1s702ms 1s702ms 18 1 1s487ms 1s487ms 19 7 9s938ms 1s419ms 20 1 1s420ms 1s420ms 21 3 4s705ms 1s568ms 22 6 23s638ms 3s939ms 23 4 8s182ms 2s45ms [ User: pubeu - Total duration: 45s991ms - Times executed: 22 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1245710') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1245710') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:33:12 Duration: 5s303ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1256281') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1256281') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:31:51 Duration: 4s949ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1270786') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1270786') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:48:20 Duration: 4s120ms Database: ctdprd51 User: pubeu Bind query: yes
13 88 2m12s 1s5ms 6s992ms 1s505ms select i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.iscurated, i.pub_start_yr yr, count(*) over () fullrowcount from ( select r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.pub_start_yr, r.sort_txt from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) union select r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.pub_start_yr, r.sort_txt from reference r where r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?) union select r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, r.pub_start_yr, r.sort_txt from reference r where r.id in ( select l.object_id from db_link l where l.type_cd = ? and l.object_type_id = ? and (upper(l.acc_txt) = ?)) order by ?) i;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 08 21 16 17s275ms 1s79ms 22 66 1m43s 1s571ms 23 6 11s518ms 1s919ms [ User: pubeu - Total duration: 1m35s - Times executed: 65 ]
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SELECT /* ReferenceBasicQueryDAO */ i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.isCurated, i.pub_start_yr yr, COUNT(*) OVER () fullRowCount FROM ( SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper(l.acc_txt) = '1')) ORDER BY 9) i;
Date: 2025-06-08 22:55:38 Duration: 6s992ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ReferenceBasicQueryDAO */ i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.isCurated, i.pub_start_yr yr, COUNT(*) OVER () fullRowCount FROM ( SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper(l.acc_txt) = '1')) ORDER BY 9) i;
Date: 2025-06-08 22:55:03 Duration: 5s860ms Bind query: yes
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SELECT /* ReferenceBasicQueryDAO */ i.title, i.authors_txt authors, i.core_citation_txt citation, i.id, i.acc_txt refacc, i.isCurated, i.pub_start_yr yr, COUNT(*) OVER () fullRowCount FROM ( SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1') UNION SELECT r.title, r.authors_txt, r.core_citation_txt, r.id, r.acc_txt, r.acc_db_cd, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated, r.pub_start_yr, r.sort_txt FROM reference r WHERE r.id IN ( SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper(l.acc_txt) = '1')) ORDER BY 9) i;
Date: 2025-06-08 23:05:07 Duration: 5s568ms Database: ctdprd51 User: pubeu Bind query: yes
14 80 6m42s 4s174ms 16s31ms 5s32ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 08 01 1 4s865ms 4s865ms 02 23 1m47s 4s679ms 03 23 1m51s 4s842ms 04 13 1m 4s666ms 09 2 10s54ms 5s27ms 10 11 50s612ms 4s601ms 13 1 4s389ms 4s389ms 15 2 8s934ms 4s467ms 21 1 12s87ms 12s87ms 22 1 16s31ms 16s31ms 23 2 15s996ms 7s998ms [ User: pubeu - Total duration: 1m36s - Times executed: 15 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1302273') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1302273') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 22:43:04 Duration: 16s31ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1352740') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1352740') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 21:10:37 Duration: 12s87ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1367139') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1367139') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 23:35:37 Duration: 11s433ms Database: ctdprd51 User: pubeu Bind query: yes
15 72 8m27s 1s26ms 3m11s 7s50ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 08 06 24 2m4s 5s201ms 07 1 4s195ms 4s195ms 09 11 13s954ms 1s268ms 11 10 16s364ms 1s636ms 12 1 2s688ms 2s688ms 13 3 6s338ms 2s112ms 21 1 1s26ms 1s26ms 22 15 1m44s 6s961ms 23 6 3m53s 38s967ms [ User: pubeu - Total duration: 5m44s - Times executed: 32 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 23:21:45 Duration: 3m11s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2099568') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 23:50:22 Duration: 18s451ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 22:57:33 Duration: 14s16ms Bind query: yes
16 72 6m57s 1s49ms 32s848ms 5s801ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where phenotypeterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and associatedterm.object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 08 00 3 24s769ms 8s256ms 01 2 18s768ms 9s384ms 02 3 22s196ms 7s398ms 03 4 11s788ms 2s947ms 04 5 6s222ms 1s244ms 05 2 2s249ms 1s124ms 06 4 22s586ms 5s646ms 09 7 21s353ms 3s50ms 10 2 20s333ms 10s166ms 11 3 23s297ms 7s765ms 12 1 1s309ms 1s309ms 13 3 9s47ms 3s15ms 14 1 1s162ms 1s162ms 15 3 8s393ms 2s797ms 16 3 18s127ms 6s42ms 17 2 6s99ms 3s49ms 18 3 24s475ms 8s158ms 19 3 35s50ms 11s683ms 20 3 32s661ms 10s887ms 21 5 40s514ms 8s102ms 22 8 51s148ms 6s393ms 23 2 16s152ms 8s76ms [ User: pubeu - Total duration: 1m29s - Times executed: 14 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 22:24:57 Duration: 32s848ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:06:26 Duration: 19s481ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 11:44:17 Duration: 18s475ms Bind query: yes
17 67 2m50s 1s29ms 5s170ms 2s546ms select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 08 03 1 1s576ms 1s576ms 04 1 1s188ms 1s188ms 06 1 1s232ms 1s232ms 21 6 13s283ms 2s213ms 22 39 1m45s 2s712ms 23 19 47s551ms 2s502ms [ User: pubeu - Total duration: 1m34s - Times executed: 38 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2100257');
Date: 2025-06-08 22:25:08 Duration: 5s170ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105180');
Date: 2025-06-08 22:36:41 Duration: 4s758ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2106535');
Date: 2025-06-08 22:29:26 Duration: 4s206ms Database: ctdprd51 User: pubeu Bind query: yes
18 64 1m40s 1s407ms 2s206ms 1s573ms select t.nm;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 08 00 6 9s471ms 1s578ms 01 15 23s465ms 1s564ms 02 12 18s906ms 1s575ms 03 4 6s67ms 1s516ms 04 13 19s907ms 1s531ms 05 3 4s493ms 1s497ms 06 5 8s456ms 1s691ms 08 1 2s206ms 2s206ms 09 4 6s170ms 1s542ms 10 1 1s587ms 1s587ms [ User: pubeu - Total duration: 8s546ms - Times executed: 5 ]
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SELECT /* GeneBrowseTermsDAO */ t.nm;
Date: 2025-06-08 08:52:46 Duration: 2s206ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm;
Date: 2025-06-08 06:41:05 Duration: 2s178ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ t.nm;
Date: 2025-06-08 00:12:17 Duration: 1s740ms Bind query: yes
19 58 2h16m23s 1s209ms 18m36s 2m21s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 08 00 4 7s209ms 1s802ms 01 5 12m3s 2m24s 02 2 4m33s 2m16s 03 4 22m52s 5m43s 04 3 18m40s 6m13s 05 2 18m34s 9m17s 06 3 5s99ms 1s699ms 09 3 8m13s 2m44s 10 2 6s705ms 3s352ms 11 2 3m38s 1m49s 12 3 5s837ms 1s945ms 13 3 18m13s 6m4s 14 2 4s144ms 2s72ms 15 5 9m43s 1m56s 16 2 4s68ms 2s34ms 17 2 5s168ms 2s584ms 18 1 3s347ms 3s347ms 19 5 9m7s 1m49s 20 1 2s491ms 2s491ms 21 2 5m20s 2m40s 22 1 4m31s 4m31s 23 1 5s621ms 5s621ms [ User: pubeu - Total duration: 45m21s - Times executed: 12 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 04:03:40 Duration: 18m36s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 03:18:23 Duration: 18m36s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 05:35:52 Duration: 18m33s Bind query: yes
20 56 2m6s 1s6ms 8s83ms 2s255ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.ixn_id = any (array (( select ixn_id from ixn_anatomy where anatomy_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?)))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 08 00 9 19s380ms 2s153ms 01 9 25s854ms 2s872ms 02 4 5s345ms 1s336ms 03 9 19s814ms 2s201ms 04 2 3s238ms 1s619ms 05 3 10s150ms 3s383ms 06 7 11s889ms 1s698ms 08 1 1s46ms 1s46ms 09 7 16s495ms 2s356ms 10 5 13s96ms 2s619ms [ User: pubeu - Total duration: 16s37ms - Times executed: 7 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2111710')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 01:43:55 Duration: 8s83ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2111710')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 09:55:02 Duration: 8s Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2111710')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 01:52:13 Duration: 7s767ms Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 8m53s 8m53s 8m53s 1 8m53s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 08 00 1 8m53s 8m53s -
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-06-08 00:08:54 Duration: 8m53s
2 1s209ms 18m36s 2m21s 58 2h16m23s select phenotypeterm.nm gonm, phenotypeterm.nm_html gonmhtml, phenotypeterm.acc_txt goacc, phenotypeterm.id goid, diseaseterm.nm diseasenm, diseaseterm.acc_txt diseaseacc, diseaseterm.acc_db_cd diseaseaccdbcd, diseaseterm.id diseaseid, via_gene_qty genenetworkcount, via_chem_qty chemnetworkcount, indirect_reference_qty referencecount, count(*) over () fullrowcount from phenotype_term pt inner join term phenotypeterm on pt.phenotype_id = phenotypeterm.id inner join term diseaseterm on pt.term_id = diseaseterm.id where phenotypeterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?) and diseaseterm.object_type_id = ? order by chemnetworkcount desc, genenetworkcount desc limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 08 00 4 7s209ms 1s802ms 01 5 12m3s 2m24s 02 2 4m33s 2m16s 03 4 22m52s 5m43s 04 3 18m40s 6m13s 05 2 18m34s 9m17s 06 3 5s99ms 1s699ms 09 3 8m13s 2m44s 10 2 6s705ms 3s352ms 11 2 3m38s 1m49s 12 3 5s837ms 1s945ms 13 3 18m13s 6m4s 14 2 4s144ms 2s72ms 15 5 9m43s 1m56s 16 2 4s68ms 2s34ms 17 2 5s168ms 2s584ms 18 1 3s347ms 3s347ms 19 5 9m7s 1m49s 20 1 2s491ms 2s491ms 21 2 5m20s 2m40s 22 1 4m31s 4m31s 23 1 5s621ms 5s621ms [ User: pubeu - Total duration: 45m21s - Times executed: 12 ]
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 04:03:40 Duration: 18m36s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 03:18:23 Duration: 18m36s Bind query: yes
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SELECT /* GoDiseasesDAO */ phenotypeTerm.nm goNm, phenotypeTerm.nm_html goNmHTML, phenotypeTerm.acc_txt goAcc, phenotypeTerm.id goId, diseaseTerm.nm diseaseNm, diseaseTerm.acc_txt diseaseAcc, diseaseTerm.acc_db_cd diseaseAccDBCd, diseaseTerm.id diseaseId, via_gene_qty geneNetworkCount, via_chem_qty chemNetworkCount, indirect_reference_qty referenceCount, COUNT(*) OVER () fullRowCount FROM phenotype_term pt inner join term phenotypeTerm on pt.phenotype_id = phenotypeTerm.id inner join term diseaseTerm on pt.term_id = diseaseTerm.id WHERE phenotypeTerm.id IN ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1258019') and diseaseTerm.object_type_id = 3 ORDER BY chemNetworkCount desc, geneNetworkCount desc LIMIT 50;
Date: 2025-06-08 05:35:52 Duration: 18m33s Bind query: yes
3 1m16s 1m17s 1m17s 4 5m9s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 08 06 1 1m17s 1m17s 10 1 1m17s 1m17s 14 1 1m16s 1m16s 18 1 1m17s 1m17s [ User: postgres - Total duration: 5m9s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 5m9s - Times executed: 4 ]
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-06-08 06:06:19 Duration: 1m17s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-06-08 10:06:20 Duration: 1m17s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2025-06-08 18:06:19 Duration: 1m17s Database: ctdprd51 User: postgres Application: pg_dump
4 28s401ms 28s783ms 28s580ms 7 3m20s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 08 17 4 1m54s 28s574ms 19 3 1m25s 28s587ms [ User: pubeu - Total duration: 57s393ms - Times executed: 2 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,0') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,0') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE ',0')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE ',0')) ii GROUP BY ii.cd;
Date: 2025-06-08 19:14:47 Duration: 28s783ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,6') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,6') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE ',6')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE ',6')) ii GROUP BY ii.cd;
Date: 2025-06-08 17:09:23 Duration: 28s737ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,15') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '1*DBMS_PIPE.RECEIVE_MESSAGE & CHR & 99 & CHR & 99 & CHR & 99 & ,15') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '99' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE ',15')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '1*DBMS_PIPE.RECEIVE_MESSAGE' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE 'CHR' OR upper(l.acc_txt) LIKE '99' OR upper(l.acc_txt) LIKE ',15')) ii GROUP BY ii.cd;
Date: 2025-06-08 17:08:59 Duration: 28s610ms Database: ctdprd51 User: pubeu Bind query: yes
5 1s320ms 1m14s 22s341ms 39 14m31s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 08 00 3 51s340ms 17s113ms 03 9 2m48s 18s727ms 04 2 42s226ms 21s113ms 06 3 1m1s 20s619ms 09 3 55s920ms 18s640ms 11 1 1s320ms 1s320ms 14 7 2m9s 18s559ms 18 6 1m52s 18s727ms 19 2 34s153ms 17s76ms 22 3 3m33s 1m11s [ User: pubeu - Total duration: 6m6s - Times executed: 12 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2102635') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:15:57 Duration: 1m14s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2102635') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:16:13 Duration: 1m13s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2102635') ORDER BY g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:16:21 Duration: 1m5s Database: ctdprd51 User: pubeu Bind query: yes
6 1s82ms 31s352ms 8s58ms 92 12m21s select sq.*, count(*) over () fullrowcount from ( select distinct gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid from dag_node gt inner join gene_go_annot gga on gt.object_id = gga.go_term_id inner join term g on gga.gene_id = g.id where gt.id in ( select p.descendant_dag_node_id from dag_path p where p.ancestor_object_id = ?) and gga.is_not = false) sq order by sq.gonmsort, sq.genesymbolsort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 08 00 2 3s611ms 1s805ms 01 4 25s180ms 6s295ms 02 6 1m1s 10s195ms 03 9 51s70ms 5s674ms 04 7 1m 8s675ms 05 9 1m14s 8s255ms 06 6 37s458ms 6s243ms 09 4 1m8s 17s15ms 10 7 1m17s 11s80ms 11 1 22s867ms 22s867ms 12 3 6s106ms 2s35ms 13 3 11s610ms 3s870ms 14 3 26s180ms 8s726ms 16 7 38s337ms 5s476ms 17 1 3s694ms 3s694ms 18 5 18s512ms 3s702ms 19 3 6s770ms 2s256ms 20 3 26s306ms 8s768ms 21 3 33s463ms 11s154ms 22 5 1m26s 17s342ms 23 1 1s623ms 1s623ms [ User: pubeu - Total duration: 2m57s - Times executed: 20 ]
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1265161') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 22:11:29 Duration: 31s352ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1234207') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 09:20:26 Duration: 28s759ms Bind query: yes
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SELECT /* GoGenesDAO */ sq.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT gt.nm gonm, gt.nm_html gonmhtml, gt.nm_sort gonmsort, gt.acc_txt goacc, gt.object_id goid, g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid FROM dag_node gt INNER JOIN gene_go_annot gga ON gt.object_id = gga.go_term_id INNER JOIN term g ON gga.gene_id = g.id WHERE gt.id IN ( SELECT p.descendant_dag_node_id FROM dag_path p WHERE p.ancestor_object_id = '1234207') AND gga.is_not = false) sq ORDER BY sq.gonmsort, sq.genesymbolsort LIMIT 50;
Date: 2025-06-08 04:39:27 Duration: 26s751ms Bind query: yes
7 1s26ms 3m11s 7s50ms 72 8m27s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 08 06 24 2m4s 5s201ms 07 1 4s195ms 4s195ms 09 11 13s954ms 1s268ms 11 10 16s364ms 1s636ms 12 1 2s688ms 2s688ms 13 3 6s338ms 2s112ms 21 1 1s26ms 1s26ms 22 15 1m44s 6s961ms 23 6 3m53s 38s967ms [ User: pubeu - Total duration: 5m44s - Times executed: 32 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 23:21:45 Duration: 3m11s Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2099568') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 23:50:22 Duration: 18s451ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105953') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-06-08 22:57:33 Duration: 14s16ms Bind query: yes
8 1s49ms 32s848ms 5s801ms 72 6m57s select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where phenotypeterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and associatedterm.object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 08 00 3 24s769ms 8s256ms 01 2 18s768ms 9s384ms 02 3 22s196ms 7s398ms 03 4 11s788ms 2s947ms 04 5 6s222ms 1s244ms 05 2 2s249ms 1s124ms 06 4 22s586ms 5s646ms 09 7 21s353ms 3s50ms 10 2 20s333ms 10s166ms 11 3 23s297ms 7s765ms 12 1 1s309ms 1s309ms 13 3 9s47ms 3s15ms 14 1 1s162ms 1s162ms 15 3 8s393ms 2s797ms 16 3 18s127ms 6s42ms 17 2 6s99ms 3s49ms 18 3 24s475ms 8s158ms 19 3 35s50ms 11s683ms 20 3 32s661ms 10s887ms 21 5 40s514ms 8s102ms 22 8 51s148ms 6s393ms 23 2 16s152ms 8s76ms [ User: pubeu - Total duration: 1m29s - Times executed: 14 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 22:24:57 Duration: 32s848ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:06:26 Duration: 19s481ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where phenotypeTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1234207'))) and associatedTerm.object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 11:44:17 Duration: 18s475ms Bind query: yes
9 4s174ms 16s31ms 5s32ms 80 6m42s select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 08 01 1 4s865ms 4s865ms 02 23 1m47s 4s679ms 03 23 1m51s 4s842ms 04 13 1m 4s666ms 09 2 10s54ms 5s27ms 10 11 50s612ms 4s601ms 13 1 4s389ms 4s389ms 15 2 8s934ms 4s467ms 21 1 12s87ms 12s87ms 22 1 16s31ms 16s31ms 23 2 15s996ms 7s998ms [ User: pubeu - Total duration: 1m36s - Times executed: 15 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1302273') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1302273') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 22:43:04 Duration: 16s31ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1352740') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1352740') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 21:10:37 Duration: 12s87ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1367139') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1367139') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2025-06-08 23:35:37 Duration: 11s433ms Database: ctdprd51 User: pubeu Bind query: yes
10 1s23ms 9s780ms 4s335ms 54 3m54s select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 08 00 3 12s462ms 4s154ms 02 2 11s807ms 5s903ms 04 1 6s536ms 6s536ms 05 16 52s803ms 3s300ms 06 7 32s936ms 4s705ms 08 6 6s730ms 1s121ms 09 2 11s461ms 5s730ms 10 1 1s278ms 1s278ms 11 2 9s933ms 4s966ms 12 1 4s849ms 4s849ms 13 2 5s746ms 2s873ms 15 3 14s875ms 4s958ms 16 1 4s875ms 4s875ms 18 1 4s860ms 4s860ms 21 2 17s934ms 8s967ms 22 3 27s887ms 9s295ms 23 1 7s128ms 7s128ms [ User: pubeu - Total duration: 1m10s - Times executed: 11 ]
[ User: qaeu - Total duration: 1s173ms - Times executed: 1 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1299718' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-06-08 22:43:48 Duration: 9s780ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1414209' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-06-08 21:20:28 Duration: 9s621ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1326390' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-06-08 22:17:57 Duration: 9s445ms Database: ctdprd51 User: pubeu Bind query: yes
11 1s28ms 20s680ms 4s252ms 207 14m40s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 08 00 19 1m27s 4s600ms 01 22 1m36s 4s407ms 02 22 1m38s 4s467ms 03 24 1m52s 4s671ms 04 21 1m33s 4s459ms 05 27 1m42s 3s806ms 06 23 1m27s 3s793ms 08 1 1s420ms 1s420ms 09 18 1m9s 3s878ms 10 9 36s242ms 4s26ms 11 2 9s190ms 4s595ms 13 1 1s183ms 1s183ms 14 1 1s28ms 1s28ms 15 1 1s70ms 1s70ms 16 1 7s312ms 7s312ms 17 1 9s116ms 9s116ms 18 1 1s464ms 1s464ms 19 1 13s892ms 13s892ms 20 1 4s926ms 4s926ms 21 2 2s119ms 1s59ms 22 4 29s453ms 7s363ms 23 5 13s571ms 2s714ms [ User: pubeu - Total duration: 1m39s - Times executed: 25 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105180') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 22:36:36 Duration: 20s680ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2100109') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 03:06:45 Duration: 13s895ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2096169') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort LIMIT 50;
Date: 2025-06-08 19:12:20 Duration: 13s892ms Bind query: yes
12 1s1ms 9s790ms 3s155ms 264 13m53s select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where associatedterm.id = any (array (( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 08 00 15 48s119ms 3s207ms 01 8 16s334ms 2s41ms 02 18 59s153ms 3s286ms 03 16 38s789ms 2s424ms 04 17 58s257ms 3s426ms 05 35 1m36s 2s751ms 06 22 1m7s 3s68ms 08 1 1s44ms 1s44ms 09 5 10s761ms 2s152ms 10 12 37s301ms 3s108ms 11 10 38s105ms 3s810ms 12 9 30s749ms 3s416ms 13 9 37s357ms 4s150ms 14 15 57s936ms 3s862ms 15 7 20s685ms 2s955ms 16 9 27s774ms 3s86ms 17 4 12s800ms 3s200ms 18 6 17s289ms 2s881ms 19 10 26s200ms 2s620ms 20 9 32s103ms 3s567ms 21 15 54s757ms 3s650ms 22 7 29s543ms 4s220ms 23 5 14s273ms 2s854ms [ User: pubeu - Total duration: 3m13s - Times executed: 58 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:19:20 Duration: 9s790ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 21:08:10 Duration: 7s826ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where associatedTerm.id = ANY (ARRAY (( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566'))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 22:08:10 Duration: 7s480ms Bind query: yes
13 1s7ms 6s892ms 2s950ms 212 10m25s select * from ( select g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, count(*) over () fullrowcount from term g where g.id in ( select gt.gene_id from dag_path dp inner join gene_taxon gt on dp.descendant_object_id = gt.taxon_id where dp.ancestor_object_id = ? union all select gcr.gene_id from dag_path dp inner join gene_chem_reference gcr on dp.descendant_object_id = gcr.taxon_id where dp.ancestor_object_id = ?) offset ?) mq order by mq.genesymbolsort limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 08 00 3 7s87ms 2s362ms 01 1 1s859ms 1s859ms 02 6 17s783ms 2s963ms 03 10 31s344ms 3s134ms 04 4 16s370ms 4s92ms 05 2 4s158ms 2s79ms 06 4 17s850ms 4s462ms 09 4 13s550ms 3s387ms 10 5 13s123ms 2s624ms 11 3 9s971ms 3s323ms 12 8 28s421ms 3s552ms 13 1 3s868ms 3s868ms 14 10 21s441ms 2s144ms 15 7 17s53ms 2s436ms 16 1 2s869ms 2s869ms 17 3 7s208ms 2s402ms 18 3 5s16ms 1s672ms 19 6 13s604ms 2s267ms 20 9 24s678ms 2s742ms 21 7 20s40ms 2s862ms 22 76 4m8s 3s270ms 23 39 1m39s 2s554ms [ User: pubeu - Total duration: 5m16s - Times executed: 111 ]
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '156933' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '156933') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 22:21:15 Duration: 6s892ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '660706' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '660706') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 06:17:19 Duration: 6s638ms Bind query: yes
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SELECT /* TaxonGenesDAO */ * FROM ( SELECT g.nm genesymbol, g.nm_sort genesymbolsort, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN ( SELECT gt.gene_id FROM dag_path dp INNER JOIN gene_taxon gt ON dp.descendant_object_id = gt.taxon_id WHERE dp.ancestor_object_id = '660706' UNION ALL SELECT gcr.gene_id FROM dag_path dp INNER JOIN gene_chem_reference gcr ON dp.descendant_object_id = gcr.taxon_id WHERE dp.ancestor_object_id = '660706') OFFSET 0) mq ORDER BY mq.genesymbolsort LIMIT 50;
Date: 2025-06-08 03:56:33 Duration: 6s569ms Bind query: yes
14 1s8ms 15s105ms 2s628ms 257 11m15s select e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, ( select string_agg(distinct stressorterm.nm || ? || ( select cd from object_type where id = stressorterm.object_type_id) || ? || stressorterm.nm_html || ? || stressorterm.acc_txt || ? || stressorterm.acc_db_cd, ?)) as stressoragents, ( select string_agg(distinct coalesce(receptorterm.nm, ?) || ? || coalesce(( select cd from object_type where id = receptorterm.object_type_id), ?) || ? || coalesce(receptorterm.nm_html, ?) || ? || coalesce(receptorterm.acc_txt, ?) || ? || coalesce(receptorterm.acc_db_cd, ?) || ? || receptor.description, ?)) as receptors, ( select string_agg(distinct country.nm, ?)) as studycountries, ( select string_agg(distinct location.locality_txt, ?)) as localities, ( select string_agg(distinct event.medium_nm || ? || coalesce(event.medium_term_acc_txt, ?), ?)) as assaymediums, ( select string_agg(distinct exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd, ?)) as assayedmarkers, ( select string_agg(distinct diseaseterm.nm || ? || ( select cd from object_type where id = diseaseterm.object_type_id) || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd, ?)) as diseases, ( select string_agg(distinct phenotypeterm.nm || ? || ( select cd from object_type where id = phenotypeterm.object_type_id) || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd, ?)) as phenotypes, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, re.author_summary summary, count(*) over () fullrowcount from exposure e inner join reference r on e.reference_id = r.id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join term receptorterm on receptor.term_id = receptorterm.id left outer join exp_event event on e.exp_event_id = event.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join exp_event_location location on e.exp_event_id = location.exp_event_id left outer join country on location.country_id = country.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id inner join reference_exp re on e.reference_id = re.reference_id left outer join exp_study_factor expstudyfactor on re.id = expstudyfactor.reference_exp_id where e.reference_id = any (array ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ?) and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressoragents limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 08 00 17 39s498ms 2s323ms 01 10 21s258ms 2s125ms 02 10 34s170ms 3s417ms 03 11 30s956ms 2s814ms 04 10 21s843ms 2s184ms 05 33 1m15s 2s286ms 06 30 1m12s 2s418ms 08 2 5s668ms 2s834ms 09 6 12s159ms 2s26ms 10 12 26s648ms 2s220ms 11 11 25s145ms 2s285ms 12 11 22s847ms 2s77ms 13 10 23s326ms 2s332ms 14 7 15s198ms 2s171ms 15 13 34s529ms 2s656ms 16 8 24s43ms 3s5ms 17 3 10s708ms 3s569ms 18 5 13s576ms 2s715ms 19 6 15s756ms 2s626ms 20 11 28s217ms 2s565ms 21 13 37s257ms 2s865ms 22 10 1m2s 6s291ms 23 8 21s665ms 2s708ms [ User: pubeu - Total duration: 2m38s - Times executed: 50 ]
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:25:40 Duration: 15s105ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1449732') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1449732') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:33:43 Duration: 11s277ms Bind query: yes
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SELECT /* ChemExposureStudiesAssnsDAO */ e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, ( SELECT STRING_AGG(distinct stressorTerm.nm || '^' || ( select cd from object_type where id = stressorTerm.object_type_id) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd, '|')) as stressorAgents, ( SELECT STRING_AGG(distinct COALESCE(receptorTerm.nm, '') || '^' || COALESCE(( select cd from object_type where id = receptorTerm.object_type_id), '') || '^' || COALESCE(receptorTerm.nm_html, '') || '^' || COALESCE(receptorTerm.acc_txt, '') || '^' || COALESCE(receptorTerm.acc_db_cd, '') || '^' || receptor.description, '|')) as receptors, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, ( SELECT STRING_AGG(distinct location.locality_txt, ' | ')) as localities, ( SELECT STRING_AGG(distinct event.medium_nm || '^' || COALESCE(event.medium_term_acc_txt, ''), ' | ')) as assayMediums, ( SELECT STRING_AGG(distinct exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd, '|')) as assayedMarkers, ( SELECT STRING_AGG(distinct diseaseTerm.nm || '^' || ( select cd from object_type where id = diseaseTerm.object_type_id) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd, '|')) as diseases, ( SELECT STRING_AGG(distinct phenotypeTerm.nm || '^' || ( select cd from object_type where id = phenotypeTerm.object_type_id) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd, '|')) as phenotypes, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, re.author_summary summary, COUNT(*) OVER () fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (ARRAY ( select reference_id from exposure e1, term chem, exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1, term t, exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1411566') and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like 'chem%') and event1.id = e1.exp_event_id)) group by e.reference_acc_txt, r.abbr_authors_txt, pub_start_yr, re.author_summary order by stressorAgents LIMIT 50;
Date: 2025-06-08 22:52:52 Duration: 11s216ms Database: ctdprd51 User: pubeu Bind query: yes
15 1s29ms 5s170ms 2s546ms 67 2m50s select count(*) from gene_disease gd where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?);Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 08 03 1 1s576ms 1s576ms 04 1 1s188ms 1s188ms 06 1 1s232ms 1s232ms 21 6 13s283ms 2s213ms 22 39 1m45s 2s712ms 23 19 47s551ms 2s502ms [ User: pubeu - Total duration: 1m34s - Times executed: 38 ]
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2100257');
Date: 2025-06-08 22:25:08 Duration: 5s170ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2105180');
Date: 2025-06-08 22:36:41 Duration: 4s758ms Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO.rowCount */ COUNT(*) FROM gene_disease gd WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2106535');
Date: 2025-06-08 22:29:26 Duration: 4s206ms Database: ctdprd51 User: pubeu Bind query: yes
16 1s6ms 8s83ms 2s255ms 56 2m6s select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.ixn_id = any (array (( select ixn_id from ixn_anatomy where anatomy_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?)))) and ptr.term_object_type_id = ? group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort limit ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 08 00 9 19s380ms 2s153ms 01 9 25s854ms 2s872ms 02 4 5s345ms 1s336ms 03 9 19s814ms 2s201ms 04 2 3s238ms 1s619ms 05 3 10s150ms 3s383ms 06 7 11s889ms 1s698ms 08 1 1s46ms 1s46ms 09 7 16s495ms 2s356ms 10 5 13s96ms 2s619ms [ User: pubeu - Total duration: 16s37ms - Times executed: 7 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2111710')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 01:43:55 Duration: 8s83ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2111710')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 09:55:02 Duration: 8s Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.ixn_id = ANY (ARRAY (( select ixn_id from ixn_anatomy where anatomy_id in ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2111710')))) and ptr.term_object_type_id = 2 group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort LIMIT 50;
Date: 2025-06-08 01:52:13 Duration: 7s767ms Bind query: yes
17 1s327ms 5s303ms 1s678ms 88 2m27s select distinct stressorterm.nm as chemnm, stressorterm.nm_html as chemnmhtml, stressorterm.nm_sort as chemnmsort, stressorterm.acc_txt as chemacc, ( select string_agg(distinct stressorsrctype.nm || ? || stressorsrctype.cd, ?)) as stressorsrctypenm, stressor.src_details as stressorsrcdetails, stressor.sample_qty as stressorsampleqty, stressor.note as stressornote, receptor.qty as nbrreceptors, receptor.description as receptors, receptor.note as receptornotes, receptorterm.nm || ? || ( select cd from object_type where id = receptor.object_type_id) || ? || receptorterm.nm_html || ? || receptorterm.acc_txt || ? || receptorterm.acc_db_cd as receptorterms, ( select string_agg(distinct receptortobaccouse.tobacco_use_nm || ? || receptortobaccouse.pct, ?)) as smokerstatus, receptor.age as agerange, receptor.age_uom_nm as ageuomnm, receptor.age_qualifier_nm as agequalifiernm, receptor.gender_nm as gendernmsearch, receptor.id receptorid, ( select string_agg(pct || ? || gender_nm || ? || gender_nm_html, ?) from exp_receptor_gender where exp_receptor_id = receptor.id) as genderdetails, ( select string_agg(distinct receptorrace.race_nm || ? || receptorrace.pct, ?)) as receptorrace, ( select string_agg(distinct eventassaymethod.nm, ?)) as assaymethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumacctxt, ( select string_agg(distinct eventproject.project_nm, ?)) as associatedstudytitles, event.collection_start_yr || ? || event.collection_end_yr as collectionstartandendyr, event.detection_limit as detectionlimit, event.detection_limit_uom as detectionlimituom, event.detection_freq as detectionfreq, event.note as eventnote, ( select string_agg(distinct eventlocation.geographic_region_nm, ?)) as stateorprovince, ( select string_agg(distinct eventlocation.locality_txt, ?)) as localitytxt, ( select string_agg(distinct country.nm, ?)) as studycountries, exposuremarkerterm.nm || ? || ( select cd from object_type where id = exposuremarkerterm.object_type_id) || ? || exposuremarkerterm.nm_html || ? || exposuremarkerterm.acc_txt || ? || exposuremarkerterm.acc_db_cd as assayedmarkers, event.exp_marker_lvl as assaylevel, assay_uom as measurement, assay_measurement_stat as measurementstat, assay_note as assaynote, eiot.description as outcomerltnp, diseaseterm.nm || ? || ? || ? || diseaseterm.nm_html || ? || diseaseterm.acc_txt || ? || diseaseterm.acc_db_cd as diseasefield, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotypefield, outcome.phenotype_action_degree_type_nm as phenotypeactiondegreetypenm, e.reference_acc_txt || ? || r.abbr_authors_txt || ? || r.pub_start_yr as ref, r.abbr_authors_txt as abbrauthorstxt, ( select string_agg(distinct expstudyfactor.study_factor_nm, ?)) as studyfactornms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || anatomyterm.id || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, outcome.note as outcomenote, eventlocation.exp_event_id as eventid, count(*) over () fullrowcount from exposure e inner join exp_stressor stressor on e.exp_stressor_id = stressor.id inner join term stressorterm on stressor.chem_id = stressorterm.id left outer join exp_receptor receptor on e.exp_receptor_id = receptor.id left outer join exp_event event on e.exp_event_id = event.id left outer join term exposuremarkerterm on event.exp_marker_term_id = exposuremarkerterm.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseterm on outcome.disease_id = diseaseterm.id left outer join term phenotypeterm on outcome.phenotype_id = phenotypeterm.id left outer join term receptorterm on receptor.term_id = receptorterm.id inner join reference r on e.reference_id = r.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorsrctype on esss.exp_stressor_src_type_id = stressorsrctype.id left outer join exp_receptor_tobacco_use receptortobaccouse on receptor.id = receptortobaccouse.exp_receptor_id left outer join exp_receptor_race receptorrace on receptor.id = receptorrace.exp_receptor_id left outer join exp_event_assay_method eventassaymethod on event.id = eventassaymethod.exp_event_id left outer join exp_event_location eventlocation on event.id = eventlocation.exp_event_id left outer join exp_anatomy expanatomy on outcome.id = expanatomy.exp_outcome_id left outer join term anatomyterm on expanatomy.anatomy_id = anatomyterm.id left outer join country on eventlocation.country_id = country.id left outer join exp_event_project eventproject on event.id = eventproject.exp_event_id left outer join reference_exp referenceexp on e.reference_acc_txt = referenceexp.reference_acc_txt and e.reference_acc_db_id = referenceexp.reference_acc_db_id left outer join exp_study_factor expstudyfactor on referenceexp.id = expstudyfactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) or receptorterm.id in ( select descendant_object_id from dag_path where ancestor_object_id = ?) group by chemnm, chemnmhtml, chemnmsort, chemacc, stressorsrcdetails, stressorsampleqty, stressornote, receptorterms, medium, mediumacctxt, assayedmarkers, assaylevel, measurement, measurementstat, assaynote, outcomerltnp, diseasefield, phenotypefield, phenotypeactiondegreetypenm, ref, r.abbr_authors_txt, collectionstartandendyr, receptorid, detectionlimit, detectionlimituom, detectionfreq, eventnote, outcomenote, eventid order by chemnmsort limit ?;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 08 00 7 10s248ms 1s464ms 01 1 1s400ms 1s400ms 03 8 11s891ms 1s486ms 04 5 7s453ms 1s490ms 05 5 7s452ms 1s490ms 06 9 13s882ms 1s542ms 08 4 6s179ms 1s544ms 09 8 12s128ms 1s516ms 10 3 4s491ms 1s497ms 11 3 4s211ms 1s403ms 12 1 1s461ms 1s461ms 13 3 4s282ms 1s427ms 14 2 2s936ms 1s468ms 15 3 4s308ms 1s436ms 16 3 4s284ms 1s428ms 17 1 1s702ms 1s702ms 18 1 1s487ms 1s487ms 19 7 9s938ms 1s419ms 20 1 1s420ms 1s420ms 21 3 4s705ms 1s568ms 22 6 23s638ms 3s939ms 23 4 8s182ms 2s45ms [ User: pubeu - Total duration: 45s991ms - Times executed: 22 ]
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1245710') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1245710') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:33:12 Duration: 5s303ms Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1256281') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1256281') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:31:51 Duration: 4s949ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.phenotype_id in ( select descendant_object_id from dag_path where ancestor_object_id = '1270786') or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = '1270786') GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-08 22:48:20 Duration: 4s120ms Database: ctdprd51 User: pubeu Bind query: yes
18 1s49ms 3s149ms 1s658ms 102 2m49s select c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposurereferencecount, case when cd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from chem_disease_axn a where a.chem_id = cd.chem_id and a.disease_id = cd.disease_id) else null end actiontypes from chem_disease cd inner join term c on cd.chem_id = c.id inner join term d on cd.disease_id = d.id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, cd.network_score desc nulls last, d.nm_sort, c.nm_sort limit ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 08 00 9 16s72ms 1s785ms 01 4 6s509ms 1s627ms 02 4 5s928ms 1s482ms 03 3 4s98ms 1s366ms 04 4 7s221ms 1s805ms 05 11 17s400ms 1s581ms 06 6 10s786ms 1s797ms 09 4 7s361ms 1s840ms 10 4 6s388ms 1s597ms 11 3 4s513ms 1s504ms 12 1 1s816ms 1s816ms 13 4 6s794ms 1s698ms 14 4 6s852ms 1s713ms 15 4 6s877ms 1s719ms 16 4 7s553ms 1s888ms 17 3 4s463ms 1s487ms 18 3 4s421ms 1s473ms 19 4 5s129ms 1s282ms 20 5 8s608ms 1s721ms 21 4 7s811ms 1s952ms 22 10 14s533ms 1s453ms 23 4 8s35ms 2s8ms [ User: pubeu - Total duration: 42s593ms - Times executed: 25 ]
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 22:08:30 Duration: 3s149ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1451243') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 23:05:02 Duration: 2s779ms Bind query: yes
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SELECT /* ChemDiseaseAssnsDAO */ c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemid, d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, cd.network_score networkscore, cd.indirect_gene_qty inferredcount, cd.reference_qty referencecount, cd.exposure_reference_qty exposureReferenceCount, CASE WHEN cd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM chem_disease_axn a WHERE a.chem_id = cd.chem_id AND a.disease_id = cd.disease_id) ELSE NULL END actiontypes FROM chem_disease cd INNER JOIN term c ON cd.chem_id = c.id INNER JOIN term d ON cd.disease_id = d.id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1411566') ORDER BY actionTypes, cd.network_score DESC NULLS LAST, d.nm_sort, c.nm_sort LIMIT 50;
Date: 2025-06-08 21:26:18 Duration: 2s557ms Database: ctdprd51 User: pubeu Bind query: yes
19 1s514ms 3s98ms 1s598ms 472 12m34s select coalesce(d.abbr_display, d.nm_display) nm # ?, d.description # ?, coalesce(d.abbr, d.nm) anchor # ?, get_homepage_url (d.id) url # ? from db d # ? where d.id in (# ? select l.db_id # ? from db_link l # ? where l.type_cd = ? # ? and l.object_type_id = ?) # ? order by ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 08 00 28 44s379ms 1s584ms 01 25 39s231ms 1s569ms 02 37 58s549ms 1s582ms 03 57 1m30s 1s588ms 04 47 1m15s 1s606ms 05 48 1m16s 1s590ms 06 53 1m25s 1s604ms 07 1 1s777ms 1s777ms 08 9 14s421ms 1s602ms 09 57 1m30s 1s595ms 10 57 1m29s 1s565ms 11 4 6s137ms 1s534ms 12 1 1s528ms 1s528ms 13 4 6s156ms 1s539ms 14 4 6s302ms 1s575ms 15 4 6s185ms 1s546ms 16 7 10s740ms 1s534ms 17 4 6s247ms 1s561ms 18 1 1s524ms 1s524ms 19 6 9s238ms 1s539ms 20 5 7s682ms 1s536ms 21 4 7s323ms 1s830ms 22 4 10s726ms 2s681ms 23 5 8s572ms 1s714ms [ User: pubeu - Total duration: 1m29s - Times executed: 52 ]
[ User: qaeu - Total duration: 1s538ms - Times executed: 1 ]
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:24:38 Duration: 3s98ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:52:42 Duration: 2s881ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT COALESCE(d.abbr_display, d.nm_display) nm # 015, d.description # 015, COALESCE(d.abbr, d.nm) anchor # 015, get_homepage_url (d.id) url # 015 FROM db d # 015 WHERE d.id IN (# 015 SELECT l.db_id # 015 FROM db_link l # 015 WHERE l.type_cd = 'X' # 015 AND l.object_type_id = 4) # 015 ORDER BY 1;
Date: 2025-06-08 22:35:31 Duration: 2s670ms Database: ctdprd51 User: pubeu Bind query: yes
20 1s317ms 2s845ms 1s577ms 1,693 44m30s select ;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 08 00 198 5m18s 1s607ms 01 200 5m18s 1s591ms 02 242 6m27s 1s602ms 03 196 5m8s 1s575ms 04 228 5m57s 1s567ms 05 170 4m26s 1s567ms 06 169 4m26s 1s577ms 08 16 25s308ms 1s581ms 09 176 4m32s 1s546ms 10 98 2m29s 1s524ms [ User: pubeu - Total duration: 4m22s - Times executed: 164 ]
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:33:47 Duration: 2s845ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:33:46 Duration: 2s472ms Bind query: yes
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SELECT /* GeneBrowseTermsDAO */ ;
Date: 2025-06-08 06:54:02 Duration: 2s69ms Database: ctdprd51 User: pubeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 3s184ms 3 1s54ms 1s69ms 1s61ms SELECT /* GeneDiseaseRefsDAO */ i.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT COALESCE(gdr.source_acc_txt, 'ZZZ' || r.sort_txt) refcolsort, CASE WHEN gdr.source_acc_db_id IS NOT NULL THEN get_disease_ixn_source_link_html (gdr.source_acc_db_id, gdr.source_acc_txt) ELSE NULL END AS sourceacclink, r.acc_txt refAcc, gdr.source_acc_txt sourceAcc, gdr.source_acc_db_id sourceAccDbId, r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, gdr.gene_id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, gdr.disease_id diseaseid, r.has_exposures hasExposures FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id WHERE gdr.gene_id = $1 AND gdr.disease_id = $2) i ORDER BY 1 LIMIT 50;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Jun 08 14 1 1s60ms 1s60ms 18 2 2s123ms 1s61ms -
SELECT /* GeneDiseaseRefsDAO */ i.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT COALESCE(gdr.source_acc_txt, 'ZZZ' || r.sort_txt) refcolsort, CASE WHEN gdr.source_acc_db_id IS NOT NULL THEN get_disease_ixn_source_link_html (gdr.source_acc_db_id, gdr.source_acc_txt) ELSE NULL END AS sourceacclink, r.acc_txt refAcc, gdr.source_acc_txt sourceAcc, gdr.source_acc_db_id sourceAccDbId, r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, gdr.gene_id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, gdr.disease_id diseaseid, r.has_exposures hasExposures FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id WHERE gdr.gene_id = $1 AND gdr.disease_id = $2) i ORDER BY 1 LIMIT 50;
Date: 2025-06-08 18:51:39 Duration: 1s69ms Database: postgres parameters: $1 = '2104674'
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SELECT /* GeneDiseaseRefsDAO */ i.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT COALESCE(gdr.source_acc_txt, 'ZZZ' || r.sort_txt) refcolsort, CASE WHEN gdr.source_acc_db_id IS NOT NULL THEN get_disease_ixn_source_link_html (gdr.source_acc_db_id, gdr.source_acc_txt) ELSE NULL END AS sourceacclink, r.acc_txt refAcc, gdr.source_acc_txt sourceAcc, gdr.source_acc_db_id sourceAccDbId, r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, gdr.gene_id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, gdr.disease_id diseaseid, r.has_exposures hasExposures FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id WHERE gdr.gene_id = $1 AND gdr.disease_id = $2) i ORDER BY 1 LIMIT 50;
Date: 2025-06-08 14:46:15 Duration: 1s60ms Database: postgres parameters: $1 = '1869327', $2 = '1869327'
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SELECT /* GeneDiseaseRefsDAO */ i.*, COUNT(*) OVER () fullRowCount FROM ( SELECT DISTINCT COALESCE(gdr.source_acc_txt, 'ZZZ' || r.sort_txt) refcolsort, CASE WHEN gdr.source_acc_db_id IS NOT NULL THEN get_disease_ixn_source_link_html (gdr.source_acc_db_id, gdr.source_acc_txt) ELSE NULL END AS sourceacclink, r.acc_txt refAcc, gdr.source_acc_txt sourceAcc, gdr.source_acc_db_id sourceAccDbId, r.id, r.abbr_authors_txt authors, r.title, r.core_citation_txt citation, r.pub_start_yr yr, r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes iscurated, gdr.gene_id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, gdr.disease_id diseaseid, r.has_exposures hasExposures FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id WHERE gdr.gene_id = $1 AND gdr.disease_id = $2) i ORDER BY 1 LIMIT 50;
Date: 2025-06-08 18:53:09 Duration: 1s54ms Database: postgres
2 1s98ms 1 1s98ms 1s98ms 1s98ms SELECT /* ReferenceCitedDiseasesDAO */ d.id, d.nm, d.nm_html nmHtml, d.acc_txt acc, d.acc_db_cd accdbcd, d.has_chems hasChems, d.has_genes hasGenes FROM term d WHERE d.id IN ( SELECT gdr.disease_id FROM gene_disease_reference gdr WHERE gdr.reference_id = $1 AND gdr.source_cd IN ('C', 'O') UNION ALL SELECT cdr.disease_id FROM chem_disease_reference cdr WHERE cdr.reference_id = $2 AND cdr.source_cd = 'C' UNION ALL select outcome.disease_id from exposure e, exp_outcome outcome where e.reference_id = $3 and e.exp_outcome_id = outcome.id) ORDER BY d.nm_sort;Times Reported Time consuming bind #2
Day Hour Count Duration Avg duration 02 1 1s98ms 1s98ms -
SELECT /* ReferenceCitedDiseasesDAO */ d.id, d.nm, d.nm_html nmHtml, d.acc_txt acc, d.acc_db_cd accdbcd, d.has_chems hasChems, d.has_genes hasGenes FROM term d WHERE d.id IN ( SELECT gdr.disease_id FROM gene_disease_reference gdr WHERE gdr.reference_id = $1 AND gdr.source_cd IN ('C', 'O') UNION ALL SELECT cdr.disease_id FROM chem_disease_reference cdr WHERE cdr.reference_id = $2 AND cdr.source_cd = 'C' UNION ALL select outcome.disease_id from exposure e, exp_outcome outcome where e.reference_id = $3 and e.exp_outcome_id = outcome.id) ORDER BY d.nm_sort;
Date: 2025-06-08 03:06:46 Duration: 1s98ms Database: postgres parameters: $1 = '4', $2 = 'A'
3 1s96ms 1 1s96ms 1s96ms 1s96ms SELECT /* GeneDiseaseRefActionsDAO */ DISTINCT a.action_type_cd actionTypeCd, a.action_type_nm actionTypeNm FROM gene_disease_reference_axn a INNER JOIN gene_disease_reference gdr ON a.gene_disease_reference_id = gdr.id WHERE gdr.gene_id = $1 AND gdr.disease_id = $2 AND gdr.reference_id = $3 ORDER BY a.action_type_nm;Times Reported Time consuming bind #3
Day Hour Count Duration Avg duration 08 1 1s96ms 1s96ms -
SELECT /* GeneDiseaseRefActionsDAO */ DISTINCT a.action_type_cd actionTypeCd, a.action_type_nm actionTypeNm FROM gene_disease_reference_axn a INNER JOIN gene_disease_reference gdr ON a.gene_disease_reference_id = gdr.id WHERE gdr.gene_id = $1 AND gdr.disease_id = $2 AND gdr.reference_id = $3 ORDER BY a.action_type_nm;
Date: 2025-06-08 09:34:42 Duration: 1s96ms Database: postgres parameters: $1 = '4', $2 = 'A'
4 1s81ms 1 1s81ms 1s81ms 1s81ms SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = $1) or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = $2) GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;Times Reported Time consuming bind #4
Day Hour Count Duration Avg duration 03 1 1s81ms 1s81ms -
SELECT DISTINCT stressorTerm.nm as chemNm, stressorTerm.nm_html as chemNmHtml, stressorTerm.nm_sort as chemNmSort, stressorTerm.acc_txt as chemAcc, ( SELECT STRING_AGG(distinct stressorSrcType.nm || '^' || stressorSrcType.cd, '|')) as stressorSrcTypeNm, stressor.src_details as stressorSrcDetails, stressor.sample_qty as stressorSampleQty, stressor.note as stressorNote, receptor.qty as nbrReceptors, receptor.description as receptors, receptor.note as receptorNotes, receptorTerm.nm || '^' || ( select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms, ( SELECT STRING_AGG(distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct, ' | ')) as smokerStatus, receptor.age as ageRange, receptor.age_uom_nm as ageUOMNm, receptor.age_qualifier_nm as ageQualifierNm, receptor.gender_nm as genderNmSearch, receptor.id receptorID, ( SELECT STRING_AGG(pct || '^' || gender_nm || '^' || gender_nm_html, '|') from exp_receptor_gender where exp_receptor_id = receptor.id) as genderDetails, ( SELECT STRING_AGG(DISTINCT receptorRace.race_nm || '^' || receptorRace.pct, ' | ')) as receptorRace, ( SELECT STRING_AGG(DISTINCT eventAssayMethod.nm, ' | ')) as assayMethods, event.medium_nm as medium, event.medium_term_acc_txt as mediumAccTxt, ( SELECT STRING_AGG(DISTINCT eventProject.project_nm, ' | ')) as associatedStudyTitles, event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr, event.detection_limit as detectionLimit, event.detection_limit_uom as detectionLimitUOM, event.detection_freq as detectionFreq, event.note as eventNote, ( SELECT STRING_AGG(DISTINCT eventLocation.geographic_region_nm, ' | ')) as stateOrProvince, ( SELECT STRING_AGG(DISTINCT eventLocation.locality_txt, ' | ')) as localityTxt, ( SELECT STRING_AGG(distinct country.nm, ' | ')) as studyCountries, exposureMarkerTerm.nm || '^' || ( select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers, event.exp_marker_lvl as assayLevel, assay_uom as measurement, assay_measurement_stat as measurementStat, assay_note as assayNote, eiot.description as outcomeRltnp, diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField, outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm, e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref, r.abbr_authors_txt as abbrAuthorsTxt, ( SELECT STRING_AGG(DISTINCT expStudyFactor.study_factor_nm, ' | ')) as studyFactorNms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, outcome.note as outcomeNote, eventLocation.exp_event_id as eventID, COUNT(*) OVER () fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where outcome.disease_id in ( select descendant_object_id from dag_path where ancestor_object_id = $1) or receptorTerm.id in ( select descendant_object_id from dag_path where ancestor_object_id = $2) GROUP BY chemNm, chemNmHtml, chemNmSort, chemAcc, stressorSrcDetails, stressorSampleQty, stressorNote, receptorTerms, medium, mediumAccTxt, assayedMarkers, assayLevel, measurement, measurementStat, assayNote, outcomeRltnp, diseaseField, phenotypeField, phenotypeActionDegreeTypeNm, ref, r.abbr_authors_txt, collectionStartAndEndYr, receptorID, detectionLimit, detectionLimitUOM, detectionFreq, eventNote, outcomeNote, eventID order by chemNmSort LIMIT 50;
Date: 2025-06-07 04:32:17 Duration: 1s81ms Database: postgres parameters: $1 = '2106284', $2 = '2106284'
5 0ms 4,683 0ms 0ms 0ms ;Times Reported Time consuming bind #5
Day Hour Count Duration Avg duration Jun 07 03 2 0ms 0ms 04 2 0ms 0ms 05 2 0ms 0ms 06 5 0ms 0ms 07 7 0ms 0ms 08 10 0ms 0ms 09 17 0ms 0ms 10 26 0ms 0ms 11 34 0ms 0ms 12 55 0ms 0ms 13 74 0ms 0ms 14 132 0ms 0ms 15 139 0ms 0ms 16 182 0ms 0ms 17 195 0ms 0ms 18 282 0ms 0ms 19 283 0ms 0ms 20 261 0ms 0ms 21 291 0ms 0ms 22 312 0ms 0ms 23 260 0ms 0ms Jun 08 00 265 0ms 0ms 01 255 0ms 0ms 02 294 0ms 0ms 03 238 0ms 0ms 04 241 0ms 0ms 05 196 0ms 0ms 06 234 0ms 0ms 08 17 0ms 0ms 09 244 0ms 0ms 10 109 0ms 0ms 17 10 0ms 0ms 18 8 0ms 0ms 22 1 0ms 0ms [ User: pubeu - Total duration: 4m22s - Times executed: 156 ]
-
;
Date: Duration: 0ms Database: postgres parameters: $1 = '4', $2 = 'A'
-
Events
Log levels
Key values
- 182,146 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 38 FATAL entries
- 945 ERROR entries
- 0 WARNING entries
- 30 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 732 Max number of times the same event was reported
- 1,013 Total events found
Rank Times reported Error 1 732 ERROR: syntax error in ts"..."
Times Reported Most Frequent Error / Event #1
Day Hour Count Jun 08 00 1 02 2 03 1 04 2 05 3 06 1 09 1 11 1 12 1 15 1 17 102 18 17 19 190 20 254 21 46 22 37 23 72 - ERROR: syntax error in ts"サンリオ スタンプセット"
- ERROR: syntax error in ts"HE & ANALYTICAL & COHORT & CONSISTED & OF & 6412 & PRIVATELY & INSURED & AND & 3694 & UNINSURED & PATIENTS. & OVERALL & MEDIAN & HOSPITAL & CHARGES & WERE & 628 & INTERQUARTILE & RANGE & 758– 386 & . & RISK & OF & FINANCIAL & TOXICITY & WAS & 86.5% & AMONG & UNINSURED & PATIENTS & AND & 0% & AMONG & INSURED & PATIENTS. & PREDICTORS & OF & FINANCIAL & TOXICITY & INCLUDED & EMERGENCY & ADMISSION, & BEING & IN & THE & LOWEST & RESIDENTIAL & INCOME & QUARTILE & AND & HAVING & ULCERATIVE & COLITIS & COMPARED & TO & CROHN & S & DISEASE & . & ADDITIONAL & PREDICTORS & WERE & BEING & OF & BLACK & RACE & OR & MALE & SEX."
- ERROR: syntax error in ts"クアラルンプール国際空港 & エアアジア到着 市内移動"
Statement: SELECT /* GeneBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.nm matchedNm ,lt.nm_display matchedType ,CASE WHEN lt.nm_display='Symbol' THEN true ELSE false END isNameMatch ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM term t INNER JOIN term_label l ON l.term_id = t.id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id WHERE l.object_type_id = 4 AND t.object_type_id = 4 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER(PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 4 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,false isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,1 relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN term t ON l.object_id = t.id WHERE l.type_cd = 'A' AND l.object_type_id = 4 AND (upper( l.acc_txt ) = $3 ) ORDER BY 13,14 ) sq LIMIT 50
Date: 2025-06-08 03:27:25
Statement: SELECT /* GeneBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.nm matchedNm ,lt.nm_display matchedType ,CASE WHEN lt.nm_display='Symbol' THEN true ELSE false END isNameMatch ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM term t INNER JOIN term_label l ON l.term_id = t.id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id WHERE l.object_type_id = 4 AND t.object_type_id = 4 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER(PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 4 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,false isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,1 relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN term t ON l.object_id = t.id WHERE l.type_cd = 'A' AND l.object_type_id = 4 AND (upper( l.acc_txt ) = $3 OR upper( l.acc_txt ) = $4 OR upper( l.acc_txt ) = $5 OR upper( l.acc_txt ) = $6 OR upper( l.acc_txt ) = $7 OR upper( l.acc_txt ) = $8 OR upper( l.acc_txt ) = $9 OR upper( l.acc_txt ) = $10 OR upper( l.acc_txt ) = $11 OR upper( l.acc_txt ) = $12 OR upper( l.acc_txt ) = $13 OR upper( l.acc_txt ) = $14 OR upper( l.acc_txt ) = $15 OR upper( l.acc_txt ) = $16 OR upper( l.acc_txt ) = $17 OR upper( l.acc_txt ) = $18 OR upper( l.acc_txt ) = $19 OR upper( l.acc_txt ) = $20 OR upper( l.acc_txt ) = $21 OR upper( l.acc_txt ) = $22 OR upper( l.acc_txt ) = $23 OR upper( l.acc_txt ) = $24 OR upper( l.acc_txt ) = $25 OR upper( l.acc_txt ) = $26 OR upper( l.acc_txt ) = $27 OR upper( l.acc_txt ) = $28 OR upper( l.acc_txt ) = $29 OR upper( l.acc_txt ) = $30 OR upper( l.acc_txt ) = $31 OR upper( l.acc_txt ) = $32 OR upper( l.acc_txt ) = $33 OR upper( l.acc_txt ) = $34 OR upper( l.acc_txt ) = $35 OR upper( l.acc_txt ) = $36 OR upper( l.acc_txt ) = $37 OR upper( l.acc_txt ) = $38 OR upper( l.acc_txt ) = $39 OR upper( l.acc_txt ) = $40 OR upper( l.acc_txt ) = $41 OR upper( l.acc_txt ) = $42 OR upper( l.acc_txt ) = $43 OR upper( l.acc_txt ) = $44 OR upper( l.acc_txt ) = $45 OR upper( l.acc_txt ) = $46 OR upper( l.acc_txt ) = $47 OR upper( l.acc_txt ) = $48 OR upper( l.acc_txt ) = $49 OR upper( l.acc_txt ) = $50 OR upper( l.acc_txt ) = $51 OR upper( l.acc_txt ) = $52 OR upper( l.acc_txt ) = $53 OR upper( l.acc_txt ) = $54 OR upper( l.acc_txt ) = $55 OR upper( l.acc_txt ) = $56 OR upper( l.acc_txt ) = $57 OR upper( l.acc_txt ) = $58 OR upper( l.acc_txt ) = $59 OR upper( l.acc_txt ) = $60 OR upper( l.acc_txt ) = $61 OR upper( l.acc_txt ) = $62 OR upper( l.acc_txt ) = $63 OR upper( l.acc_txt ) = $64 OR upper( l.acc_txt ) = $65 OR upper( l.acc_txt ) = $66 OR upper( l.acc_txt ) = $67 OR upper( l.acc_txt ) = $68 OR upper( l.acc_txt ) = $69 OR upper( l.acc_txt ) = $70 OR upper( l.acc_txt ) = $71 OR upper( l.acc_txt ) = $72 OR upper( l.acc_txt ) = $73 ) ORDER BY 13,14 ) sq LIMIT 50
Date: 2025-06-08 05:35:35
Statement: SELECT /* GeneBasicQueryDAO */ sq.* ,COUNT(*) OVER() fullRowCount FROM ( SELECT /* label */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.nm matchedNm ,lt.nm_display matchedType ,CASE WHEN lt.nm_display='Symbol' THEN true ELSE false END isNameMatch ,CASE WHEN lt.nm_display='Name' THEN true ELSE false END isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,CASE WHEN UPPER(l.nm) = $1 THEN 1 ELSE 2 END relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM term t INNER JOIN term_label l ON l.term_id = t.id INNER JOIN term_label_type lt ON l.term_label_type_id = lt.id WHERE l.object_type_id = 4 AND t.object_type_id = 4 AND l.id IN( SELECT FIRST_VALUE(i.id) OVER(PARTITION BY i.term_id ORDER BY it.priority_seq, i.nm) FROM term_label i INNER JOIN term_label_type it ON i.term_label_type_id = it.id WHERE i.object_type_id = 4 AND i.nm_fts @@ to_tsquery('common.english_nostops', $2) ) UNION ALL SELECT /* acc */ t.acc_txt acc ,'name:' || t.nm accQueryStr ,t.nm ,t.nm_html nmHtml ,t.secondary_nm secondaryNm ,l.acc_txt matchednm ,'Accession' matchedtype ,false isNameMatch ,false isSecondaryNameMatch ,t.has_chems hasChems ,t.has_diseases hasDiseases ,t.has_exposures hasExposures ,1 relevance ,t.nm_sort ,t.id ,t.has_phenotypes hasPhenotypes FROM db_link l INNER JOIN term t ON l.object_id = t.id WHERE l.type_cd = 'A' AND l.object_type_id = 4 AND (upper( l.acc_txt ) = $3 OR upper( l.acc_txt ) = $4 OR upper( l.acc_txt ) = $5 ) ORDER BY 13,14 ) sq LIMIT 50
Date: 2025-06-08 05:51:35
2 42 ERROR: value too long for type character varying(...)
Times Reported Most Frequent Error / Event #2
Day Hour Count Jun 08 19 14 21 9 23 19 - ERROR: value too long for type character varying(32)
- ERROR: value too long for type character varying(4)
Statement: INSERT /* AdvancedQueryDAO.logQuery */ INTO pubc.log_query (type_cd ,query_tm ,submission_qty ,session_id ,server_nm ,node_nm ,remote_addr ,http_user_agent ,results_qty ,execution_ms ,gene_txt ,taxon_txt ,chem_txt ,acc_txt ,party_nm_txt ,gene_query_type ,taxon_query_type ,chem_query_type ,party_query_type ,action_type_txt ,pathway_txt ,pathway_query_type ,gene_form_type_txt ,action_degree_type_txt,go_txt ,go_query_type ,disease_txt ,disease_query_type ,gd_assn_type ,from_yr ,through_yr ,title_abstract_txt ,review_status ) VALUES ($1 ,CURRENT_TIMESTAMP ,1 ,$2 ,$3 ,NULLIF($4,'') ,SUBSTR($5,1,128) ,NULLIF(SUBSTR($6,1,256),'') ,$7 ,NULLIF($8,-1) ,NULLIF($9,'') ,NULLIF($10,'') ,NULLIF($11,'') ,NULLIF(SUBSTR($12,1,4000),'') ,NULLIF($13,'') ,NULLIF($14,'') ,NULLIF($15,'') ,NULLIF($16,'') ,NULLIF($17,'') ,NULLIF(SUBSTR($18,1,4000),'') ,NULLIF(SUBSTR($19,1,4000),'') ,NULLIF(SUBSTR($20,1,4000),'') ,NULLIF(SUBSTR($21,1,4000),'') ,NULLIF(SUBSTR($22,1,4000),'') ,NULLIF($23,'') ,NULLIF($24,'') ,NULLIF(SUBSTR($25,1,4000),'') ,NULLIF($26,'') ,NULLIF($27,'') ,NULLIF($28,0) ,NULLIF($29,0) ,NULLIF($30,'') ,NULLIF($31,'') ) RETURNING id
Date: 2025-06-08 19:13:24
Statement: INSERT INTO pubc.log_query (type_cd ,query_tm ,submission_qty ,session_id ,server_nm ,remote_addr ,results_qty ,basic_query_txt ,batch_input_type_txt ,results_format_txt ,dag_txt ,action_type_txt ,action_degree_type_txt ,http_user_agent ,node_nm ,execution_ms ) VALUES ($1 ,CURRENT_TIMESTAMP ,1 ,$2 ,$3 ,SUBSTR($4,1,128) ,$5 ,SUBSTR($6,1,4000) ,$7 ,NULLIF($8,'') ,NULLIF(SUBSTR($9,1,128),'') ,NULLIF(SUBSTR($10,1,4000),'') ,NULLIF(SUBSTR($11,1,4000),'') ,NULLIF(SUBSTR($12,1,256),'') ,NULLIF($13,'') ,NULLIF($14,-1) )
Date: 2025-06-08 19:50:29
3 28 LOG: could not send data to client: Broken pipe
Times Reported Most Frequent Error / Event #3
Day Hour Count Jun 08 03 1 04 1 05 1 07 9 13 1 21 6 22 5 23 4 - LOG: could not send data to client: Broken pipe
- LOG: could not send data to client: Broken pipe
Statement: SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount ,gd.exposure_reference_qty exposureReferenceCount ,CASE WHEN gd.curated_reference_qty > 0 THEN (SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN (SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = $1) ORDER BY actionTypes ,gd.network_score DESC NULLS LAST ,g.nm_sort ,d.nm_sort
Date: 2025-06-08 07:10:50 Database: ctdprd51 Application: User: pubeu Remote:
Statement: SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount ,gd.exposure_reference_qty exposureReferenceCount ,CASE WHEN gd.curated_reference_qty > 0 THEN (SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN (SELECT p.descendant_object_id FROM dag_path p
Date: 2025-06-08 07:10:50 Database: ctdprd51 Application: User: pubeu Remote:
4 27 FATAL: connection to client lost
Times Reported Most Frequent Error / Event #4
Day Hour Count Jun 08 03 1 04 1 05 1 07 8 13 1 21 6 22 5 23 4 - FATAL: connection to client lost
- FATAL: connection to client lost
Statement: SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount ,gd.exposure_reference_qty exposureReferenceCount ,CASE WHEN gd.curated_reference_qty > 0 THEN (SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN (SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = $1) ORDER BY actionTypes ,gd.network_score DESC NULLS LAST ,g.nm_sort ,d.nm_sort
Date: 2025-06-08 07:10:50
Statement: SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount ,gd.exposure_reference_qty exposureReferenceCount ,CASE WHEN gd.curated_reference_qty > 0 THEN (SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes
Date: 2025-06-08 07:10:50
5 23 ERROR: invalid byte sequence for encoding
Times Reported Most Frequent Error / Event #5
Day Hour Count Jun 08 18 20 20 1 21 2 - ERROR: invalid byte sequence for encoding "UTF8": 0x00
- ERROR: invalid byte sequence for encoding "UTF8": 0x00
- ERROR: invalid byte sequence for encoding "UTF8": 0x00
Context: unnamed portal parameter $12
Statement: INSERT INTO /* BatchLoggingDAO */ pubc.log_query (type_cd ,query_tm ,submission_qty ,session_id ,server_nm ,node_nm ,remote_addr ,http_user_agent ,results_qty ,execution_ms ,batch_input_type_txt ,dag_txt ,results_format_txt ,action_type_txt ,basic_query_txt ,input_term_qty ) VALUES ($1 ,CURRENT_TIMESTAMP ,1 ,$2 ,$3 ,NULLIF($4,'') ,SUBSTR($5,1,128) ,NULLIF(SUBSTR($6,1,256),'') ,$7 ,NULLIF($8,-1) ,NULLIF($9,'') ,NULLIF(SUBSTR($10,1,128),'') ,NULLIF($11,'') ,NULLIF(SUBSTR($12,1,4000),'') ,NULLIF($13,'') ,$14 )Date: 2025-06-08 18:09:48
Context: unnamed portal parameter $1
Statement: SELECT /* GeneIdBySymbolAccDAO */ t.id ,t.nm ,t.nm_sort nmSort ,t.acc_txt acc ,t.acc_db_cd accDbCd FROM term t ,(SELECT li.term_id FROM term_label li INNER JOIN term_label_type lti ON li.term_label_type_id = lti.id AND li.object_type_id = lti.object_type_id AND UPPER(li.nm) = $1 AND lti.object_type_id = 4 AND lti.nm = 'SYMBOL' UNION SELECT l.object_id FROM db_link l WHERE l.acc_txt = $2 AND l.object_type_id = 4 AND l.type_cd = 'A') ids WHERE t.id = ids.term_id ORDER BY CASE WHEN UPPER(t.nm) = $3 THEN 1 ELSE 2 END ,t.nm_sortDate: 2025-06-08 18:14:17
Context: unnamed portal parameter $1
Statement: SELECT /* ObjectIdDAOImpl.LabelsAndAccs */ t.id ,t.nm ,t.nm_sort nmSort ,t.acc_txt acc ,t.acc_db_cd accDbCd FROM term t ,(SELECT li.term_id FROM term_label li WHERE UPPER(li.nm) = $1 AND li.object_type_id = 2 UNION SELECT l.object_id FROM db_link l WHERE upper( l.acc_txt ) = $2 AND l.object_type_id = 2 AND l.type_cd = 'A') ids WHERE t.id = ids.term_id ORDER BY CASE WHEN UPPER(t.nm) = $3 THEN 1 ELSE 2 END ,t.nm_sortDate: 2025-06-08 18:14:47
6 15 ERROR: canceling statement due to user request
Times Reported Most Frequent Error / Event #6
Day Hour Count Jun 08 21 6 22 5 23 4 - ERROR: canceling statement due to user request
- ERROR: canceling statement due to user request
- ERROR: canceling statement due to user request
Statement: SELECT row_to_json (T) FROM ( SELECT sum(numbackends) as numbackends , sum(xact_commit) as xact_commit , sum(xact_rollback) as xact_rollback , sum(blks_read) as blks_read , sum(blks_hit) as blks_hit , sum(tup_returned) as tup_returned , sum(tup_fetched) as tup_fetched , sum(tup_inserted) as tup_inserted , sum(tup_updated) as tup_updated , sum(tup_deleted) as tup_deleted , sum(conflicts) as conflicts , sum(temp_files) as temp_files , sum(temp_bytes) as temp_bytes , sum(deadlocks) as deadlocks , sum(COALESCE(checksum_failures, 0)) as checksum_failures , sum(blk_read_time) as blk_read_time , sum(blk_write_time) as blk_write_time FROM pg_catalog.pg_stat_database ) T ;
Date: 2025-06-08 21:03:18 Database: postgres Application: User: zbx_monitor Remote:
Statement: SELECT count(*) FROM pg_catalog.pg_stat_all_tables WHERE (n_dead_tup/(n_live_tup+n_dead_tup)::float8) > 0.2 AND (n_live_tup+n_dead_tup) > 50;
Date: 2025-06-08 21:03:18
Statement: SELECT row_to_json (T) FROM ( SELECT checkpoints_timed , checkpoints_req , checkpoint_write_time , checkpoint_sync_time , buffers_checkpoint , buffers_clean , maxwritten_clean , buffers_backend , buffers_backend_fsync , buffers_alloc FROM pg_catalog.pg_stat_bgwriter ) T ;
Date: 2025-06-08 21:03:18
7 10 FATAL: canceling authentication due to timeout
Times Reported Most Frequent Error / Event #7
Day Hour Count Jun 08 06 1 07 4 08 5 8 6 ERROR: syntax error in ts"..." FROM term d WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND d.object_type_id = 3
Times Reported Most Frequent Error / Event #8
Day Hour Count Jun 08 17 6 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+349-349-1=0+0+0+1 | 2+3493491=0+0+0+1) & (-- | )" FROM term d WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+349-349-1=0+0+0+1 | 2+3493491=0+0+0+1) & (-- | )') AND d.object_type_id = 3
Statement: SELECT /* IQH.getMasterDiseaseWhereContains.Disease */ d.id
Date: 2025-06-08 17:45:30
9 5 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & OR & (...) & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #9
Day Hour Count Jun 08 18 5 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+613-613-1=0+0+0+1 | 3+6136131=0+0+0+1) & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+613-613-1=0+0+0+1 | 3+6136131=0+0+0+1) & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 18:02:19
10 5 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #10
Day Hour Count Jun 08 17 5 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+349-349-1=0+0+0+1 | 3+3493491=0+0+0+1) & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+349-349-1=0+0+0+1 | 3+3493491=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:45:33
11 5 ERROR: syntax error in ts"..." FROM term g WHERE g.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND g.object_type_id = 5 ORDER BY 1
Times Reported Most Frequent Error / Event #11
Day Hour Count Jun 08 17 5 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+304-304-1=0+0+0+1 | 3+3043041=0+0+0+1) & (-- | )" FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+304-304-1=0+0+0+1 | 3+3043041=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ORDER BY 1
Statement: SELECT /* IQH.getMasterGoWhereContains.GO */ g.id
Date: 2025-06-08 17:55:11
12 4 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #12
Day Hour Count Jun 08 17 4 - ERROR: syntax error in ts"1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:55:46
13 4 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #13
Day Hour Count Jun 08 17 4 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+111-111-1=0+0+0+1 | 2+1111111=0+0+0+1) & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+111-111-1=0+0+0+1 | 2+1111111=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:51:13
14 4 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #14
Day Hour Count Jun 08 18 4 - ERROR: syntax error in ts"1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 18:02:51
15 4 ERROR: syntax error in ts"..." FROM term g WHERE g.nm_fts @@ to_tsquery(...)') AND g.object_type_id = 5 ORDER BY 1
Times Reported Most Frequent Error / Event #15
Day Hour Count Jun 08 17 4 - ERROR: syntax error in ts"1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ORDER BY 1
Statement: SELECT /* IQH.getMasterGoWhereContains.GO */ g.id
Date: 2025-06-08 17:55:46
16 4 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT SELECT /* IQH.getMasterPathwayWhereContains */ tp.term_id FROM term p INNER JOIN term_pathway tp ON p.id = tp.pathway_id WHERE p.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #16
Day Hour Count Jun 08 17 4 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+566-566-1=0+0+0+1 | 2+5665661=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT SELECT /* IQH.getMasterPathwayWhereContains */ tp.term_id FROM term p INNER JOIN term_pathway tp ON p.id = tp.pathway_id WHERE p.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+566-566-1=0+0+0+1 | 2+5665661=0+0+0+1) & (-- | )') )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:59:40
17 4 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #17
Day Hour Count Jun 08 17 4 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+304-304-1=0+0+0+1 | 3+3043041=0+0+0+1) & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+304-304-1=0+0+0+1 | 3+3043041=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:55:11 Database: ctdprd51 Application: User: pubeu Remote:
18 3 ERROR: syntax error in ts"..." (...) & OR & (...) & (...)') AND t.object_type_id = 2 ) and (...)
Times Reported Most Frequent Error / Event #18
Day Hour Count Jun 08 17 3 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+417-417-1=0+0+0+1 | 3+4174171=0+0+0+1) & (-- | )" ( SELECT /* DBConstants.getContainsSQL */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+417-417-1=0+0+0+1 | 3+4174171=0+0+0+1) & (-- | )') AND t.object_type_id = 2 ) and ( t.has_exposures is true or t.has_genes is true or t.has_diseases is true or t.has_ixns is true or t.has_pathways is true or t.has_phenotypes is true or t.has_chems is true or t.has_references is true or t.has_go is true )
Statement: select distinct id from term t where id in
Date: 2025-06-08 17:41:10
19 3 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT SELECT /* IQH.getMasterPathwayWhereContains */ tp.term_id FROM term p INNER JOIN term_pathway tp ON p.id = tp.pathway_id WHERE p.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #19
Day Hour Count Jun 08 17 3 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+820-820-1=0+0+0+1 | 2+8208201=0+0+0+1) & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT SELECT /* IQH.getMasterPathwayWhereContains */ tp.term_id FROM term p INNER JOIN term_pathway tp ON p.id = tp.pathway_id WHERE p.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+820-820-1=0+0+0+1 | 2+8208201=0+0+0+1) & (-- | )') )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:59:48
20 2 LOG: could not receive data from client: Connection reset by peer
Times Reported Most Frequent Error / Event #20
Day Hour Count Jun 08 08 2 21 2 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) & OR & (...) & (...)') AND c.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #21
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+137-137-1=0+0+0+1 | 2+1371371=0+0+0+1) & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereContains */ c.id FROM term c WHERE c.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+137-137-1=0+0+0+1 | 2+1371371=0+0+0+1) & (-- | )') AND c.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:41:15
22 2 ERROR: syntax error in ts"..." FROM term d WHERE d.nm_fts @@ to_tsquery(...)') AND d.object_type_id = 3
Times Reported Most Frequent Error / Event #22
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"G9PTZ0CX & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" FROM term d WHERE d.nm_fts @@ to_tsquery('common.english_nostops','G9PTZ0CX & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND d.object_type_id = 3
Statement: SELECT /* IQH.getMasterDiseaseWhereContains.Disease */ d.id
Date: 2025-06-08 17:46:36
23 2 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #23
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:51:48
24 2 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & OR & (...) & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #24
Day Hour Count Jun 08 18 2 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+668-668-1=0+0+0+1 | 2+6686681=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+668-668-1=0+0+0+1 | 2+6686681=0+0+0+1) & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:02:22
25 2 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #25
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+561-561-1=0+0+0+1 | 2+5615611=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+561-561-1=0+0+0+1 | 2+5615611=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:45:40
26 2 ERROR: syntax error in ts"..." FROM term g WHERE g.nm_fts @@ to_tsquery(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND g.object_type_id = 5 ORDER BY 1
Times Reported Most Frequent Error / Event #26
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ORDER BY 1
Statement: SELECT /* IQH.getMasterGoWhereContains.GO */ g.id
Date: 2025-06-08 17:55:40
27 2 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) & OR & (...) & (...)') AND c.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #27
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+417-417-1=0+0+0+1 | 3+4174171=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereContains */ c.id FROM term c WHERE c.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+417-417-1=0+0+0+1 | 3+4174171=0+0+0+1) & (-- | )') AND c.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:41:10
28 2 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #28
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:55:40
29 2 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #29
Day Hour Count Jun 08 17 2 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+111-111-1=0+0+0+1 | 2+1111111=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+111-111-1=0+0+0+1 | 2+1111111=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:51:13
30 1 ERROR: < 2025-06-08 17:42:30.636 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:42:30.659 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:43:26.932 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:43:26.956 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #30
Day Hour Count Jun 08 17 1 - ERROR: < 2025-06-08 17:42:30.636 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:42:30.659 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:43:26.932 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:43:26.956 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+349-349-1=0+0+0+1 | 2+3493491=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:45:30 Database: ctdprd51 Application: User: pubeu Remote:
31 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & OR & 383= & SELECT & 383 & FROM & PG_SLEEP & 15 & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:06.758 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:06.782 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #31
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 383= & SELECT & 383 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 383= & SELECT & 383 & FROM & PG_SLEEP & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:06.758 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:06.782 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:52:06
32 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:44.138 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:44.161 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #32
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:44.138 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:44.161 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:40
33 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:26.119 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:26.142 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #33
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"FSH5CGUE & OR & 623= & SELECT & 623 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','FSH5CGUE & OR & 623= & SELECT & 623 & FROM & PG_SLEEP & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:26.119 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:26.142 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:52:25
34 1 FATAL: ORDER BY actionTypes ,gd.network_score DESC NULLS LAST ,g.nm_sort ,d.nm_sort d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount
Times Reported Most Frequent Error / Event #34
Day Hour Count Jun 08 07 1 - FATAL: ORDER BY actionTypes ,gd.network_score DESC NULLS LAST ,g.nm_sort ,d.nm_sort d.nm diseaseNm ,d.acc_txt diseaseAcc ,d.acc_db_cd diseaseAccDbCd ,d.id diseaseId ,g.nm geneSymbol ,g.acc_txt geneAcc ,g.acc_db_cd geneAccDbCd ,g.id geneId ,gd.network_score networkScore ,gd.indirect_chem_qty inferredCount ,gd.reference_qty referenceCount
Statement: SELECT /* DiseaseGeneAssnsDAO */
Date: 2025-06-08 07:10:50
35 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:34.681 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:34.705 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:47.110 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:47.309 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #35
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:34.681 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:34.705 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:47.110 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:47.309 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:52:34
36 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:12.715 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:12.739 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #36
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+304-304-1=0+0+0+1 | 3+3043041=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+304-304-1=0+0+0+1 | 3+3043041=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:12.715 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:12.739 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:11
37 1 ERROR: < 2025-06-08 17:51:28.882 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #37
Day Hour Count Jun 08 17 1 - ERROR: < 2025-06-08 17:51:28.882 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','EZJOOJNN & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:52:02
38 1 ERROR: < 2025-06-08 17:50:21.462 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #38
Day Hour Count Jun 08 17 1 - ERROR: < 2025-06-08 17:50:21.462 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+598-598-1=0+0+0+1 | 2+5985981=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:51:19
39 1 ERROR: < 2025-06-08 17:51:34.020 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:34.075 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:43.715 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:43.738 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:49.467 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:49.491 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) & OR & 383= & SELECT & 383 & FROM & PG_SLEEP & 15 & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #39
Day Hour Count Jun 08 17 1 - ERROR: < 2025-06-08 17:51:34.020 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:34.075 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:43.715 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:43.738 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:49.467 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:49.491 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 383= & SELECT & 383 & FROM & PG_SLEEP & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:52:06
40 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #40
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','LMHFSXFK & OR & 435= & SELECT & 435 & FROM & PG_SLEEP & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 18:02:46
41 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #41
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+111-111-1=0+0+0+1 | 3+1111111=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+111-111-1=0+0+0+1 | 3+1111111=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+598-598-1=0+0+0+1 | 3+5985981=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:51:14
42 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:45:44.160 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:44.183 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #42
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+349-349-1=0+0+0+1 | 3+3493491=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+349-349-1=0+0+0+1 | 3+3493491=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:45:44.160 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:44.183 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:45:34
43 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:31.885 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:31.933 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:33.388 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:33.454 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:39.902 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:39.925 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:46.821 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:46.844 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:48.733 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:48.756 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #43
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+299-299-1=0+0+0+1 | 3+2992991=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+299-299-1=0+0+0+1 | 3+2992991=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:31.885 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:31.933 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:33.388 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:33.454 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:39.902 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:39.925 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:46.821 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:46.844 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:48.733 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:48.756 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:51:28
44 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & OR & (...) & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:02:40.970 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:47.625 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:47.648 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #44
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+783-783-1=0+0+0+1 | 3+7837831=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+783-783-1=0+0+0+1 | 3+7837831=0+0+0+1) & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:02:40.970 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:47.625 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:47.648 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:02:29
45 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:45:50.964 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:50.987 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #45
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+461-461-1=0+0+0+1 | 2+4614611=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+461-461-1=0+0+0+1 | 2+4614611=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:45:50.964 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:50.987 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:45:49
46 1 ERROR: syntax error in ts"..." FROM term d WHERE d.nm_fts @@ to_tsquery(...) AND d.object_type_id = 3
Times Reported Most Frequent Error / Event #46
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||" FROM term d WHERE d.nm_fts @@ to_tsquery('common.english_nostops','1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||') AND d.object_type_id = 3
Statement: SELECT /* IQH.getMasterDiseaseWhereContains.Disease */ d.id
Date: 2025-06-08 17:47:05
47 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:46:36.746 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:46:36.770 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #47
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"G9PTZ0CX & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','G9PTZ0CX & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:46:36.746 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:46:36.770 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:46:36
48 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:22.599 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:22.623 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:47.872 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:47.895 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #48
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+562-562-1=0+0+0+1 | 2+5625621=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+562-562-1=0+0+0+1 | 2+5625621=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:22.599 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:22.623 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:47.872 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:47.895 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:14
49 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:03.315 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:03.341 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #49
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"EZJOOJNN & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','EZJOOJNN & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:52:03.315 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:52:03.341 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:52:02
50 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:06.171 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:06.195 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #50
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"FGHLFLUH & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','FGHLFLUH & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:06.171 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:06.195 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:02:57
51 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:57.086 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:57.110 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #51
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:57.086 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:57.110 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:51:48
52 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:05.023 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:05.046 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #52
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"6IMSA4FV & OR & 744= & SELECT & 744 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','6IMSA4FV & OR & 744= & SELECT & 744 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:05.023 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:05.046 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:56:04
53 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:02.099 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:02.122 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:28.500 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:28.524 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:36.189 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:36.212 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #53
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:02.099 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:02.122 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:28.500 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:28.524 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:36.189 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:36.212 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:56:01
54 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:03.120 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:03.143 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #54
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:03.120 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:03.143 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:58
55 1 ERROR: syntax error in ts"..." FROM term d WHERE d.nm_fts @@ to_tsquery(...) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (...)') AND d.object_type_id = 3
Times Reported Most Frequent Error / Event #55
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (-- | )" FROM term d WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (-- | )') AND d.object_type_id = 3
Statement: SELECT /* IQH.getMasterDiseaseWhereContains.Disease */ d.id
Date: 2025-06-08 17:46:51
56 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #56
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:44
57 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #57
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','G9PTZ0CX & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:46:28
58 1 ERROR: syntax error in ts"..." ,i.authors_txt authors ,i.core_citation_txt citation ,i.id ,i.acc_txt refacc ,i.isCurated ,i.pub_start_yr yr ,COUNT(...) OVER() fullRowCount FROM (...) UNION SELECT r.title ,r.authors_txt ,r.core_citation_txt ,r.id ,r.acc_txt ,r.acc_db_cd ,r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated ,r.pub_start_yr ,r.sort_txt FROM reference r WHERE r.id IN (...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE OR SUBSTR(...),1,128) LIKE ) UNION SELECT r.title ,r.authors_txt ,r.core_citation_txt ,r.id ,r.acc_txt ,r.acc_db_cd ,r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated ,r.pub_start_yr ,r.sort_txt FROM reference r WHERE r.id IN (...) = OR upper(...) = OR upper(...) = OR upper(...) = OR upper(...) = OR upper(...) = OR upper(...) = OR upper(...) = OR upper(...) = OR upper(...) = ) ) ORDER BY 9) i LIMIT 50
Times Reported Most Frequent Error / Event #58
Day Hour Count Jun 08 22 1 - ERROR: syntax error in ts"8CVTBVNZ & OR & 132= & SELECT & 132 & FROM & PG_SLEEP & 15 & (-- | )" ,i.authors_txt authors ,i.core_citation_txt citation ,i.id ,i.acc_txt refacc ,i.isCurated ,i.pub_start_yr yr ,COUNT(*) OVER() fullRowCount FROM (SELECT r.title ,r.authors_txt ,r.core_citation_txt ,r.id ,r.acc_txt ,r.acc_db_cd ,r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated ,r.pub_start_yr ,r.sort_txt FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english',) UNION SELECT r.title ,r.authors_txt ,r.core_citation_txt ,r.id ,r.acc_txt ,r.acc_db_cd ,r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated ,r.pub_start_yr ,r.sort_txt FROM reference r WHERE r.id IN (SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE OR SUBSTR(get_reference_party_nm_sort(rp.required_nm),1,128) LIKE ) UNION SELECT r.title ,r.authors_txt ,r.core_citation_txt ,r.id ,r.acc_txt ,r.acc_db_cd ,r.has_diseases or r.has_ixns or r.has_exposures or r.has_phenotypes isCurated ,r.pub_start_yr ,r.sort_txt FROM reference r WHERE r.id IN (SELECT l.object_id FROM db_link l WHERE l.type_cd = 'A' AND l.object_type_id = 7 AND (upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = OR upper( l.acc_txt ) = ) ) ORDER BY 9) i LIMIT 50
Statement: SELECT /* ReferenceBasicQueryDAO */ i.title
Date: 2025-06-08 22:27:38
59 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #59
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:55:55
60 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:24.459 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:24.482 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #60
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"LMHFSXFK & OR & 435= & SELECT & 435 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','LMHFSXFK & OR & 435= & SELECT & 435 & FROM & PG_SLEEP & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:24.459 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:24.482 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:03:23
61 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:05:49.499 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:05:49.523 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:05:54.087 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:05:54.111 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored r.abbr_authors_txt || '^' || r.pub_start_yr as ref ,(...) ) as studyFactorNms ,(...) ) as associatedStudyTitles ,(...) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd ,'|' ) ) as stressorAgents ,(...) || '^' || COALESCE(...), '' ) || '^' || COALESCE(...) || '^' || COALESCE(...) || '^' || COALESCE(...) || '^' || receptor.description ,'|' ) ) as receptors ,(...) ) as studyCountries ,(...) ) as localities ,(...),' | ' ) ) as assayMediums ,(...) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd ,'|' ) ) as assayedMarkers ,(...) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd ,'|' ) ) as diseases ,(...) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd ,'|' ) ) as phenotypes ,(...) ) as anatomyTerms ,re.author_summary summary ,COUNT(...) OVER() fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY (...) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1 ,term t ,exp_event event1 where t.id in (...) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in (...) and event1.id = e1.exp_event_id ) ) group by e.reference_acc_txt ,r.abbr_authors_txt ,pub_start_yr ,re.author_summary order by stressorAgents LIMIT 50
Times Reported Most Frequent Error / Event #61
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:05:49.499 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:05:49.523 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:05:54.087 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:05:54.111 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored r.abbr_authors_txt || '^' || r.pub_start_yr as ref ,( SELECT STRING_AGG( DISTINCT expStudyFactor.study_factor_nm,' | ' ) ) as studyFactorNms ,( SELECT STRING_AGG( DISTINCT eventProject.project_nm ,' | ' ) ) as associatedStudyTitles ,( SELECT STRING_AGG( distinct stressorTerm.nm || '^' || (select cd from object_type where id = stressorTerm.object_type_id ) || '^' || stressorTerm.nm_html || '^' || stressorTerm.acc_txt || '^' || stressorTerm.acc_db_cd ,'|' ) ) as stressorAgents ,( SELECT STRING_AGG( distinct COALESCE(receptorTerm.nm, '' ) || '^' || COALESCE( (select cd from object_type where id = receptorTerm.object_type_id ), '' ) || '^' || COALESCE( receptorTerm.nm_html, '' ) || '^' || COALESCE( receptorTerm.acc_txt, '' ) || '^' || COALESCE( receptorTerm.acc_db_cd, '' ) || '^' || receptor.description ,'|' ) ) as receptors ,( SELECT STRING_AGG( distinct country.nm,' | ' ) ) as studyCountries ,( SELECT STRING_AGG( distinct location.locality_txt,' | ' ) ) as localities ,( SELECT STRING_AGG( distinct event.medium_nm || '^' || COALESCE( event.medium_term_acc_txt, '' ),' | ' ) ) as assayMediums ,( SELECT STRING_AGG( distinct exposureMarkerTerm.nm || '^' || (select cd from object_type where id = exposureMarkerTerm.object_type_id ) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd ,'|' ) ) as assayedMarkers ,( SELECT STRING_AGG( distinct diseaseTerm.nm || '^' || (select cd from object_type where id = diseaseTerm.object_type_id ) || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd ,'|' ) ) as diseases ,( SELECT STRING_AGG( distinct phenotypeTerm.nm || '^' || (select cd from object_type where id = phenotypeTerm.object_type_id ) || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd ,'|' ) ) as phenotypes ,( SELECT STRING_AGG( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|' ) ) as anatomyTerms ,re.author_summary summary ,COUNT(*) OVER() fullRowCount FROM exposure e inner join reference r ON e.reference_id = r.id inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id left outer join exp_event event ON e.exp_event_id = event.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join exp_event_location location ON e.exp_event_id = location.exp_event_id left outer join country ON location.country_id = country.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id inner join reference_exp re ON e.reference_id = re.reference_id left outer join exp_study_factor expStudyFactor on re.id = expStudyFactor.reference_exp_id where e.reference_id = ANY ( ARRAY ( select reference_id from exposure e1 ,term chem ,exp_stressor s1 where chem.id in ( select descendant_object_id from dag_path where ancestor_object_id = ) and chem.id = s1.chem_id and s1.id = e1.exp_stressor_id union select reference_id from exposure e1 ,term t ,exp_event event1 where t.id in ( select descendant_object_id from dag_path where ancestor_object_id = ) and t.id = event1.exp_marker_term_id and event1.exp_marker_type_id in ( select id from exp_marker_type where nm like ) and event1.id = e1.exp_event_id ) ) group by e.reference_acc_txt ,r.abbr_authors_txt ,pub_start_yr ,re.author_summary order by stressorAgents LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:02:48
62 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:29.705 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:29.728 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #62
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"WTZDSYJH & OR & 67= & SELECT & 67 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','WTZDSYJH & OR & 67= & SELECT & 67 & FROM & PG_SLEEP & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:29.705 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:29.728 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:03:28
63 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:45:31.049 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:31.073 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:32.023 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:32.047 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #63
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+349-349-1=0+0+0+1 | 2+3493491=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+349-349-1=0+0+0+1 | 2+3493491=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:45:31.049 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:31.073 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:32.023 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:45:32.047 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:45:30
64 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #64
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','GYKRQAW5 & OR & 952= & SELECT & 952 & FROM & PG_SLEEP & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:46:51
65 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:47:06.274 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:47:06.298 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #65
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:47:06.274 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:47:06.298 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:47:05
66 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:19.452 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:19.499 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #66
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+598-598-1=0+0+0+1 | 2+5985981=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+598-598-1=0+0+0+1 | 2+5985981=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:19.452 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:19.499 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:51:19
67 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & OR & (...) & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,stressorTerm.nm_html as chemNmHtml ,stressorTerm.nm_sort as chemNmSort ,stressorTerm.acc_txt as chemAcc ,(...) ) as stressorSrcTypeNm ,stressor.src_details as stressorSrcDetails ,stressor.sample_qty as stressorSampleQty ,stressor.note as stressorNote ,receptor.qty as nbrReceptors ,receptor.description as receptors ,receptor.note as receptorNotes ,receptorTerm.nm || '^' || (...) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms ,(...) ) as smokerStatus ,receptor.age as ageRange ,receptor.age_uom_nm as ageUOMNm ,receptor.age_qualifier_nm as ageQualifierNm ,receptor.gender_nm as genderNmSearch ,receptor.id receptorID ,(...) from exp_receptor_gender where exp_receptor_id = receptor.id ) as genderDetails ,(...) ) as receptorRace ,(...) ) as assayMethods ,event.medium_nm as medium ,event.medium_term_acc_txt as mediumAccTxt ,(...) ) as associatedStudyTitles ,event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr ,event.detection_limit as detectionLimit ,event.detection_limit_uom as detectionLimitUOM ,event.detection_freq as detectionFreq ,event.note as eventNote ,(...) ) as stateOrProvince ,(...) ) as localityTxt ,(...) ) as studyCountries ,exposureMarkerTerm.nm || '^' || (...) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers ,event.exp_marker_lvl as assayLevel ,assay_uom as measurement ,assay_measurement_stat as measurementStat ,assay_note as assayNote ,eiot.description as outcomeRltnp ,diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField ,phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField ,outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm ,e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref ,r.abbr_authors_txt as abbrAuthorsTxt ,(...) ) as studyFactorNms ,(...) ) as anatomyTerms ,outcome.note as outcomeNote ,eventLocation.exp_event_id as eventID ,COUNT(...) OVER() fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = or receptorTerm.id = GROUP BY chemNm ,chemNmHtml ,chemNmSort ,chemAcc ,stressorSrcDetails ,stressorSampleQty ,stressorNote ,receptorTerms ,medium ,mediumAccTxt ,assayedMarkers ,assayLevel ,measurement ,measurementStat ,assayNote ,outcomeRltnp ,diseaseField ,phenotypeField ,phenotypeActionDegreeTypeNm ,ref ,r.abbr_authors_txt ,collectionStartAndEndYr ,receptorID ,detectionLimit ,detectionLimitUOM ,detectionFreq ,eventNote ,outcomeNote ,eventID order by chemNmSort LIMIT 50< 2025-06-08 18:02:38.338 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:38.362 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #67
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+613-613-1=0+0+0+1 | 3+6136131=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+613-613-1=0+0+0+1 | 3+6136131=0+0+0+1) & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,stressorTerm.nm_html as chemNmHtml ,stressorTerm.nm_sort as chemNmSort ,stressorTerm.acc_txt as chemAcc ,( SELECT STRING_AGG( distinct stressorSrcType.nm || '^' || stressorSrcType.cd,'|' ) ) as stressorSrcTypeNm ,stressor.src_details as stressorSrcDetails ,stressor.sample_qty as stressorSampleQty ,stressor.note as stressorNote ,receptor.qty as nbrReceptors ,receptor.description as receptors ,receptor.note as receptorNotes ,receptorTerm.nm || '^' || (select cd from object_type where id = receptor.object_type_id) || '^' || receptorTerm.nm_html || '^' || receptorTerm.acc_txt || '^' || receptorTerm.acc_db_cd as receptorTerms ,( SELECT STRING_AGG( distinct receptorTobaccoUse.tobacco_use_nm || '^' || receptorTobaccoUse.pct,' | ' ) ) as smokerStatus ,receptor.age as ageRange ,receptor.age_uom_nm as ageUOMNm ,receptor.age_qualifier_nm as ageQualifierNm ,receptor.gender_nm as genderNmSearch ,receptor.id receptorID ,( SELECT STRING_AGG ( pct || '^' || gender_nm || '^' || gender_nm_html, '|' ) from exp_receptor_gender where exp_receptor_id = receptor.id ) as genderDetails ,( SELECT STRING_AGG( DISTINCT receptorRace.race_nm || '^' || receptorRace.pct,' | ' ) ) as receptorRace ,( SELECT STRING_AGG( DISTINCT eventAssayMethod.nm ,' | ' ) ) as assayMethods ,event.medium_nm as medium ,event.medium_term_acc_txt as mediumAccTxt ,( SELECT STRING_AGG( DISTINCT eventProject.project_nm ,' | ' ) ) as associatedStudyTitles ,event.collection_start_yr || '-' || event.collection_end_yr as collectionStartAndEndYr ,event.detection_limit as detectionLimit ,event.detection_limit_uom as detectionLimitUOM ,event.detection_freq as detectionFreq ,event.note as eventNote ,( SELECT STRING_AGG( DISTINCT eventLocation.geographic_region_nm,' | ' ) ) as stateOrProvince ,( SELECT STRING_AGG( DISTINCT eventLocation.locality_txt,' | ' ) ) as localityTxt ,( SELECT STRING_AGG( distinct country.nm,' | ' ) ) as studyCountries ,exposureMarkerTerm.nm || '^' || (select cd from object_type where id = exposureMarkerTerm.object_type_id) || '^' || exposureMarkerTerm.nm_html || '^' || exposureMarkerTerm.acc_txt || '^' || exposureMarkerTerm.acc_db_cd as assayedMarkers ,event.exp_marker_lvl as assayLevel ,assay_uom as measurement ,assay_measurement_stat as measurementStat ,assay_note as assayNote ,eiot.description as outcomeRltnp ,diseaseTerm.nm || '^' || 'disease' || '^' || diseaseTerm.nm_html || '^' || diseaseTerm.acc_txt || '^' || diseaseTerm.acc_db_cd as diseaseField ,phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotypeField ,outcome.phenotype_action_degree_type_nm as phenotypeActionDegreeTypeNm ,e.reference_acc_txt || '^' || r.abbr_authors_txt || '^' || r.pub_start_yr as ref ,r.abbr_authors_txt as abbrAuthorsTxt ,( SELECT STRING_AGG( DISTINCT expStudyFactor.study_factor_nm,' | ' ) ) as studyFactorNms ,( SELECT STRING_AGG( distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || anatomyTerm.id || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|' ) ) as anatomyTerms ,outcome.note as outcomeNote ,eventLocation.exp_event_id as eventID ,COUNT(*) OVER() fullRowCount FROM exposure e inner join exp_stressor stressor ON e.exp_stressor_id = stressor.id inner join term stressorTerm ON stressor.chem_id = stressorTerm.id left outer join exp_receptor receptor ON e.exp_receptor_id = receptor.id left outer join exp_event event ON e.exp_event_id = event.id left outer join term exposureMarkerTerm ON event.exp_marker_term_id = exposureMarkerTerm.id left outer join exp_outcome outcome ON e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot ON outcome.exp_outcome_ixn_type_id = eiot.id left outer join term diseaseTerm ON outcome.disease_id = diseaseTerm.id left outer join term phenotypeTerm ON outcome.phenotype_id = phenotypeTerm.id left outer join term receptorTerm ON receptor.term_id = receptorTerm.id inner join reference r ON e.reference_id = r.id left outer join exp_stressor_stressor_src esss ON stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType ON esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse ON receptor.id = receptorTobaccoUse.exp_receptor_id left outer join exp_receptor_race receptorRace ON receptor.id = receptorRace.exp_receptor_id left outer join exp_event_assay_method eventAssayMethod ON event.id = eventAssayMethod.exp_event_id left outer join exp_event_location eventLocation ON event.id = eventLocation.exp_event_id left outer join exp_anatomy expAnatomy ON outcome.id = expAnatomy.exp_outcome_id Left outer join term anatomyTerm ON expAnatomy.anatomy_id = anatomyTerm.id left outer join country ON eventLocation.country_id = country.id left outer join exp_event_project eventProject ON event.id = eventProject.exp_event_id left outer join reference_exp referenceExp on e.reference_acc_txt = referenceExp.reference_acc_txt and e.reference_acc_db_id = referenceExp.reference_acc_db_id left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id where exposureMarkerTerm.id = or receptorTerm.id = GROUP BY chemNm ,chemNmHtml ,chemNmSort ,chemAcc ,stressorSrcDetails ,stressorSampleQty ,stressorNote ,receptorTerms ,medium ,mediumAccTxt ,assayedMarkers ,assayLevel ,measurement ,measurementStat ,assayNote ,outcomeRltnp ,diseaseField ,phenotypeField ,phenotypeActionDegreeTypeNm ,ref ,r.abbr_authors_txt ,collectionStartAndEndYr ,receptorID ,detectionLimit ,detectionLimitUOM ,detectionFreq ,eventNote ,outcomeNote ,eventID order by chemNmSort LIMIT 50< 2025-06-08 18:02:38.338 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:38.362 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 18:02:19
68 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:27.719 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:27.743 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:36.950 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:36.973 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:40.029 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:40.052 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #68
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (2+219-219-1=0+0+0+1 | 2+2192191=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+219-219-1=0+0+0+1 | 2+2192191=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:27.719 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:27.743 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:36.950 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:36.973 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:40.029 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:40.052 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:18
69 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:38.413 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:38.436 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #69
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"QEW8O2NN & OR & 399= & SELECT & 399 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','QEW8O2NN & OR & 399= & SELECT & 399 & FROM & PG_SLEEP & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:03:38.413 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:03:38.436 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:03:33
70 1 ERROR: syntax error in ts"..." FROM term g WHERE g.nm_fts @@ to_tsquery(...) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ORDER BY 1
Times Reported Most Frequent Error / Event #70
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (-- | )" FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ORDER BY 1
Statement: SELECT /* IQH.getMasterGoWhereContains.GO */ g.id
Date: 2025-06-08 17:56:01
71 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #71
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:55:58
72 1 ERROR: < 2025-06-08 17:40:51.595 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) & OR & (...) & (...)') AND c.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #72
Day Hour Count Jun 08 17 1 - ERROR: < 2025-06-08 17:40:51.595 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereContains */ c.id FROM term c WHERE c.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+417-417-1=0+0+0+1 | 3+4174171=0+0+0+1) & (-- | )') AND c.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:41:10 Database: ctdprd51 Application: User: pubeu Remote:
73 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:16.680 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:16.704 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #73
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+562-562-1=0+0+0+1 | 3+5625621=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+562-562-1=0+0+0+1 | 3+5625621=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:16.680 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:16.704 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+219-219-1=0+0+0+1 | 3+2192191=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:55:15
74 1 ERROR: syntax error in ts"..." FROM term g WHERE g.nm_fts @@ to_tsquery(...) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ORDER BY 1
Times Reported Most Frequent Error / Event #74
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (-- | )" FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ORDER BY 1
Statement: SELECT /* IQH.getMasterGoWhereContains.GO */ g.id
Date: 2025-06-08 17:55:55
75 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #75
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"FNKIWNS2 & OR & 342= & SELECT & 342 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','FNKIWNS2 & OR & 342= & SELECT & 342 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:56:06
76 1 ERROR: syntax error in ts"..." FROM term d WHERE d.nm_fts @@ to_tsquery(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND d.object_type_id = 3
Times Reported Most Frequent Error / Event #76
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" FROM term d WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND d.object_type_id = 3
Statement: SELECT /* IQH.getMasterDiseaseWhereContains.Disease */ d.id
Date: 2025-06-08 17:46:28
77 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & OR & (...) & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #77
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+668-668-1=0+0+0+1 | 3+6686681=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+668-668-1=0+0+0+1 | 3+6686681=0+0+0+1) & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50 ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 18:02:25
78 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:00.548 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:00.571 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #78
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 727= & SELECT & 727 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:00.548 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:00.571 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:55
79 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #79
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:46:28 Database: ctdprd51 Application: User: pubeu Remote:
80 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:08.103 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:08.126 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #80
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:56:08.103 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:08.126 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:46
81 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:54.398 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:54.421 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #81
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"5AIY4XKQ & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','5AIY4XKQ & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:54.398 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:54.421 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:49
82 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...)') AND t.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:02:55.341 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:55.365 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #82
Day Hour Count Jun 08 18 1 - ERROR: syntax error in ts"1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND t.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 18:02:55.341 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 18:02:55.365 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 18:02:51
83 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:47:03.568 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:47:03.591 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #83
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"GYKRQAW5 & OR & 952= & SELECT & 952 & FROM & PG_SLEEP & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','GYKRQAW5 & OR & 952= & SELECT & 952 & FROM & PG_SLEEP & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:47:03.568 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:47:03.591 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:46:56
84 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & (...) & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:32.983 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:33.006 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #84
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+219-219-1=0+0+0+1 | 3+2192191=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+219-219-1=0+0+0+1 | 3+2192191=0+0+0+1) & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:55:32.983 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:55:33.006 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:55:19
85 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #85
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & 592= & SELECT & 592 & FROM & PG_SLEEP & 15 & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:46:51 Database: ctdprd51 Application: User: pubeu Remote:
86 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:46:05.900 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:46:05.924 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #86
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+461-461-1=0+0+0+1 | 3+4614611=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+461-461-1=0+0+0+1 | 3+4614611=0+0+0+1) & (-- | )') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:46:05.900 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:46:05.924 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:45:52
87 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(...) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #87
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT SELECT /* IQH.getMasterGoWhereContains.Gene */ ai.gene_id FROM gene_go_annot ai WHERE ai.go_term_id IN(SELECT g.id FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & 352= & SELECT & 352 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:56:01
88 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #88
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"FSH5CGUE & OR & 623= & SELECT & 623 & FROM & PG_SLEEP & 15 & (-- | )" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','FSH5CGUE & OR & 623= & SELECT & 623 & FROM & PG_SLEEP & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:52:25
89 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & OR & (...) & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:35.674 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:35.721 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:51.467 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:51.491 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Times Reported Most Frequent Error / Event #89
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & OR & (3+598-598-1=0+0+0+1 | 3+5985981=0+0+0+1) & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (3+598-598-1=0+0+0+1 | 3+5985981=0+0+0+1) & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:35.674 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:35.721 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:51.467 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:51.491 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:51:21 Database: ctdprd51 Application: User: pubeu Remote:
90 1 ERROR: syntax error in ts"..." FROM term g WHERE g.nm_fts @@ to_tsquery(...) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (...)') AND g.object_type_id = 5 ORDER BY 1
Times Reported Most Frequent Error / Event #90
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-5 | 5) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (-- | )" FROM term g WHERE g.nm_fts @@ to_tsquery('common.english_nostops','(-5 | 5) & OR & 662= & SELECT & 662 & FROM & PG_SLEEP & 15 & (-- | )') AND g.object_type_id = 5 ORDER BY 1
Statement: SELECT /* IQH.getMasterGoWhereContains.GO */ g.id
Date: 2025-06-08 17:55:58
91 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...) & WAITFOR & DELAY & 0 & 0 & 15 & (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:54.166 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:54.190 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #91
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50< 2025-06-08 17:51:54.166 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:51:54.190 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* AdvancedGeneQueryDAO.getData */SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:51:54
92 1 ERROR: syntax error in ts"..." ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery(...) AND gd.curated_reference_qty > 0 INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #92
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||" ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT SELECT /* IQH.getMasterDiseaseWhereContains.Gene */ gd.gene_id FROM term d INNER JOIN gene_disease gd ON d.id = gd.disease_id WHERE d.nm_fts @@ to_tsquery('common.english_nostops','1 & DBMS_PIPE.RECEIVE_MESSAGE & CHR & 98 & CHR & 98 & CHR & 98 & ,15 & ||') AND gd.curated_reference_qty > 0 INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:47:05
93 1 ERROR: < 2025-06-08 17:56:24.178 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:24.201 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(...) ) ) AND gcr.gene_id = ANY (...) LIKE '1' ) INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT SELECT /* IQH.getMasterPathwayWhereContains */ tp.term_id FROM term p INNER JOIN term_pathway tp ON p.id = tp.pathway_id WHERE p.nm_fts @@ to_tsquery(...) & OR & (...) & (...)') )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) )
Times Reported Most Frequent Error / Event #93
Day Hour Count Jun 08 17 1 - ERROR: < 2025-06-08 17:56:24.178 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored< 2025-06-08 17:56:24.201 EDT >NOTICE: text-search query contains only stop words or doesn't contain lexemes, ignored ,gcr.chem_id ,gcr.gene_id ,gcr.taxon_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY ((SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE '1' ) INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT SELECT /* IQH.getMasterPathwayWhereContains */ tp.term_id FROM term p INNER JOIN term_pathway tp ON p.id = tp.pathway_id WHERE p.nm_fts @@ to_tsquery('common.english_nostops','(-1 | 1) & OR & (2+566-566-1=0+0+0+1 | 2+5665661=0+0+0+1) & (-- | )') )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') )
Statement: SELECT /* CIQH.getIxnCacheQuery */ gcr.ixn_id
Date: 2025-06-08 17:59:40
94 1 ERROR: syntax error in ts"..." g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(...) OVER() fullRowCount FROM term g WHERE g.id IN (...) ) ) AND gcr.gene_id = ANY (...)') AND gi.object_type_id = 4 INTERSECT (...) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (...) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (...) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (...) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (...) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(...) ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Times Reported Most Frequent Error / Event #94
Day Hour Count Jun 08 17 1 - ERROR: syntax error in ts"1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )" g.id geneId ,g.acc_txt acc ,g.nm nm ,g.nm nmHtml ,g.secondary_nm secondaryNm ,g.has_chems hasChems ,g.has_diseases hasDiseases ,g.has_exposures hasExposures ,g.has_phenotypes hasPhenotypes ,COUNT(*) OVER() fullRowCount FROM term g WHERE g.id IN ( SELECT gcr.gene_id FROM gene_chem_reference gcr WHERE /* CIQH.getIxnWhereCore */ EXISTS(SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN( SELECT tc.nm FROM actor_form_type tp ,actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein' ) ) ) AND gcr.gene_id = ANY (ARRAY (SELECT /* CIQH.getIxnGeneWhereContains */ gi.id FROM term gi WHERE gi.nm_fts @@ to_tsquery('common.english_nostops','1 & WAITFOR & DELAY & 0 & 0 & 15 & (-- | )') AND gi.object_type_id = 4 INTERSECT (SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE '1' AND li.object_type_id = 5 ) INTERSECT (SELECT /* IQH.getMasterDiseaseWhereEquals.Label.Gene */ gd.gene_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id INNER JOIN gene_disease gd ON dp.descendant_object_id = gd.disease_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 3 AND gd.curated_reference_qty > 0 ) INTERSECT (SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE '/' AND tp.object_type_id = 4 ) )) AND gcr.chem_id = ANY (ARRAY (SELECT /* CIQH.getIxnChemWhereEquals.Label */ dp.descendant_object_id FROM dag_path dp INNER JOIN term_label l ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 2 )) AND gcr.taxon_id = ANY (ARRAY (SELECT /* CIQH.getIxnTaxonWhereEquals.Label */ dp.descendant_object_id FROM term_label l INNER JOIN dag_path dp ON l.term_id = dp.ancestor_object_id WHERE UPPER(l.nm) LIKE '1' AND l.object_type_id = 1 )) AND gcr.id IN(SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases') ) ) ORDER BY g.nm_sort, g.id LIMIT 50
Statement: SELECT /* AdvancedGeneQueryDAO.getData */
Date: 2025-06-08 17:51:59