pgBadger-
Global information
- Generated on Sat Nov 1 04:15:09 2025
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20251031
- Parsed 2,354 log entries in 7s
- Log start from 2025-11-01 00:00:19 to 2025-11-01 03:36:37
-
Overview
Global Stats
- 4 Number of unique normalized queries
- 6 Number of queries
- 11m12s Total query duration
- 2025-11-01 00:09:37 First query
- 2025-11-01 01:24:35 Last query
- 1 queries/s at 2025-11-01 00:14:06 Query peak
- 11m12s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 11m12s Execute total duration
- 0 Number of events
- 0 Number of unique normalized events
- 0 Max number of times the same event was reported
- 0 Number of cancellation
- 1 Total number of automatic vacuums
- 3 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 287 Total number of sessions
- 46 sessions at 2025-11-01 03:27:26 Session peak
- 5d23h39m7s Total duration of sessions
- 30m1s Average duration of sessions
- 0 Average queries per session
- 2s343ms Average queries duration per session
- 29m59s Average idle time per session
- 287 Total number of connections
- 3 connections/s at 2025-11-01 00:21:22 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2025-11-01 00:14:06 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2025-11-01 00:14:06 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 0 queries/s Query Peak
- Date
Queries duration
Key values
- 11m12s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Nov 01 00 4 0ms 9m17s 2m24s 0ms 6s604ms 9m24s 01 2 0ms 48s270ms 47s813ms 0ms 47s356ms 48s270ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Nov 01 00 3 0 3m10s 0ms 0ms 9m17s 01 2 0 47s813ms 0ms 0ms 48s270ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Nov 01 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Nov 01 00 0 2 2.00 0.00% 01 0 2 2.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% Day Hour Count Average / Second Nov 01 00 84 0.02/s 01 81 0.02/s 02 79 0.02/s 03 43 0.01/s Day Hour Count Average Duration Average idle time Nov 01 00 84 29m28s 29m21s 01 81 29m46s 29m45s 02 79 30m55s 30m55s 03 43 29m58s 29m58s -
Connections
Established Connections
Key values
- 3 connections Connection Peak
- 2025-11-01 00:21:22 Date
Connections per database
Key values
- ctdprd51 Main Database
- 287 connections Total
Connections per user
Key values
- pubeu Main User
- 287 connections Total
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Sessions
Simultaneous sessions
Key values
- 46 sessions Session Peak
- 2025-11-01 03:27:26 Date
Histogram of session times
Key values
- 272 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 287 sessions Total
Sessions per user
Key values
- pubeu Main User
- 287 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 287 sessions Total
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Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 836 buffers Checkpoint Peak
- 2025-11-01 00:58:45 Date
- 83.854 seconds Highest write time
- 0.002 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2025-11-01 01:28:10 Date
Checkpoints distance
Key values
- 13.55 Mo Distance Peak
- 2025-11-01 00:58:45 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Nov 01 00 1,648 165.214s 0.004s 165.287s 01 495 49.796s 0.003s 49.881s 02 143 14.507s 0.002s 14.536s 03 19 2.011s 0.001s 2.025s Day Hour Added Removed Recycled Synced files Longest sync Average sync Nov 01 00 0 0 0 90 0.001s 0.002s 01 0 1 0 28 0.001s 0.002s 02 0 0 0 30 0.001s 0.002s 03 0 0 0 9 0.001s 0.001s Day Hour Count Avg time (sec) Nov 01 00 0 0s 01 0 0s 02 0 0s 03 0 0s Day Hour Mean distance Mean estimate Nov 01 00 6,558.00 kB 444,051.00 kB 01 1,731.50 kB 360,321.50 kB 02 184.00 kB 291,895.50 kB 03 31.00 kB 248,884.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Nov 01 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Analyzes per table
Key values
- pubc.log_query (3) Main table analyzed (database ctdprd51)
- 3 analyzes Total
Vacuums per table
Key values
- pubc.log_query (1) Main table vacuumed on database ctdprd51
- 1 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Nov 01 00 1 1 01 0 0 02 0 1 03 0 1 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 5 Total read queries
- 0 Total write queries
Queries by database
Key values
- ctdprd51 Main database
- 5 Requests
- 11m5s (ctdprd51)
- Main time consuming database
Queries by user
Key values
- pubeu Main user
- 63 Requests
User Request type Count Duration editeu Total 2 29s925ms select 2 29s925ms load Total 1 8s584ms select 1 8s584ms pub1 Total 1 25s727ms select 1 25s727ms pub2 Total 2 13s471ms select 2 13s471ms pubc Total 2 18m38s select 2 18m38s pubeu Total 63 33m3s select 63 33m3s qaeu Total 28 48m43s select 28 48m43s unknown Total 53 6h52m26s ddl 3 1m1s insert 1 2m44s others 13 52m4s select 36 5h56m35s Duration by user
Key values
- 6h52m26s (unknown) Main time consuming user
User Request type Count Duration editeu Total 2 29s925ms select 2 29s925ms load Total 1 8s584ms select 1 8s584ms pub1 Total 1 25s727ms select 1 25s727ms pub2 Total 2 13s471ms select 2 13s471ms pubc Total 2 18m38s select 2 18m38s pubeu Total 63 33m3s select 63 33m3s qaeu Total 28 48m43s select 28 48m43s unknown Total 53 6h52m26s ddl 3 1m1s insert 1 2m44s others 13 52m4s select 36 5h56m35s Queries by host
Key values
- unknown Main host
- 152 Requests
- 8h34m8s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 5 Requests
- 9m17s (psql)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-11-01 01:05:03 Date
Number of cancelled queries (5 minutes period)
NO DATASET
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Top Queries
Histogram of query times
Key values
- 3 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 9m17s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-11-01 00:09:37 - Database: ctdprd51 - User: pubc - Application: psql ]
2 48s270ms SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;[ Date: 2025-11-01 01:19:44 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
3 47s356ms SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;[ Date: 2025-11-01 01:24:35 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
4 6s918ms VACUUM ANALYZE log_query_archive;[ Date: 2025-11-01 00:09:44 ]
5 6s604ms SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1391689' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;[ Date: 2025-11-01 00:59:56 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
6 5s612ms SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1342112' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;[ Date: 2025-11-01 00:14:06 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 9m17s 1 9m17s 9m17s 9m17s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Nov 01 00 1 9m17s 9m17s [ User: pubc - Total duration: 9m17s - Times executed: 1 ]
[ Application: psql - Total duration: 9m17s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-11-01 00:09:37 Duration: 9m17s Database: ctdprd51 User: pubc Application: psql
2 1m35s 2 47s356ms 48s270ms 47s813ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Nov 01 01 2 1m35s 47s813ms [ User: pubeu - Total duration: 1m35s - Times executed: 2 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-11-01 01:19:44 Duration: 48s270ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-11-01 01:24:35 Duration: 47s356ms Database: ctdprd51 User: pubeu Bind query: yes
3 12s216ms 2 5s612ms 6s604ms 6s108ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Nov 01 00 2 12s216ms 6s108ms [ User: pubeu - Total duration: 12s216ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1391689' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-01 00:59:56 Duration: 6s604ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1342112' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-01 00:14:06 Duration: 5s612ms Database: ctdprd51 User: pubeu Bind query: yes
4 6s918ms 1 6s918ms 6s918ms 6s918ms vacuum analyze log_query_archive;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Nov 01 00 1 6s918ms 6s918ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-11-01 00:09:44 Duration: 6s918ms
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 2 1m35s 47s356ms 48s270ms 47s813ms select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Nov 01 01 2 1m35s 47s813ms [ User: pubeu - Total duration: 1m35s - Times executed: 2 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-11-01 01:19:44 Duration: 48s270ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-11-01 01:24:35 Duration: 47s356ms Database: ctdprd51 User: pubeu Bind query: yes
2 2 12s216ms 5s612ms 6s604ms 6s108ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Nov 01 00 2 12s216ms 6s108ms [ User: pubeu - Total duration: 12s216ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1391689' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-01 00:59:56 Duration: 6s604ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1342112' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-01 00:14:06 Duration: 5s612ms Database: ctdprd51 User: pubeu Bind query: yes
3 1 9m17s 9m17s 9m17s 9m17s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Nov 01 00 1 9m17s 9m17s [ User: pubc - Total duration: 9m17s - Times executed: 1 ]
[ Application: psql - Total duration: 9m17s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-11-01 00:09:37 Duration: 9m17s Database: ctdprd51 User: pubc Application: psql
4 1 6s918ms 6s918ms 6s918ms 6s918ms vacuum analyze log_query_archive;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Nov 01 00 1 6s918ms 6s918ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-11-01 00:09:44 Duration: 6s918ms
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 9m17s 9m17s 9m17s 1 9m17s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Nov 01 00 1 9m17s 9m17s [ User: pubc - Total duration: 9m17s - Times executed: 1 ]
[ Application: psql - Total duration: 9m17s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-11-01 00:09:37 Duration: 9m17s Database: ctdprd51 User: pubc Application: psql
2 47s356ms 48s270ms 47s813ms 2 1m35s select d.nm diseasenm, d.acc_txt diseaseacc, d.acc_db_cd diseaseaccdbcd, d.id diseaseid, g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, gd.network_score networkscore, gd.indirect_chem_qty inferredcount, gd.reference_qty referencecount, gd.exposure_reference_qty exposurereferencecount, case when gd.curated_reference_qty > ? then ( select string_agg(a.action_type_cd || ? || a.action_type_nm, ?) from gene_disease_axn a where a.gene_id = gd.gene_id and a.disease_id = gd.disease_id) else null end actiontypes from gene_disease gd inner join term g on gd.gene_id = g.id inner join term d on gd.disease_id = d.id where gd.disease_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) order by actiontypes, gd.network_score desc nulls last, g.nm_sort, d.nm_sort;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Nov 01 01 2 1m35s 47s813ms [ User: pubeu - Total duration: 1m35s - Times executed: 2 ]
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-11-01 01:19:44 Duration: 48s270ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* DiseaseGeneAssnsDAO */ d.nm diseaseNm, d.acc_txt diseaseAcc, d.acc_db_cd diseaseAccDbCd, d.id diseaseId, g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, gd.network_score networkScore, gd.indirect_chem_qty inferredCount, gd.reference_qty referenceCount, gd.exposure_reference_qty exposureReferenceCount, CASE WHEN gd.curated_reference_qty > 0 THEN ( SELECT STRING_AGG(a.action_type_cd || '^' || a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gd.gene_id AND a.disease_id = gd.disease_id) ELSE NULL END actionTypes FROM gene_disease gd INNER JOIN term g ON gd.gene_id = g.id INNER JOIN term d ON gd.disease_id = d.id WHERE gd.disease_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '2115258') ORDER BY actionTypes, gd.network_score DESC NULLS LAST, g.nm_sort, d.nm_sort;
Date: 2025-11-01 01:24:35 Duration: 47s356ms Database: ctdprd51 User: pubeu Bind query: yes
3 6s918ms 6s918ms 6s918ms 1 6s918ms vacuum analyze log_query_archive;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Nov 01 00 1 6s918ms 6s918ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-11-01 00:09:44 Duration: 6s918ms
4 5s612ms 6s604ms 6s108ms 2 12s216ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Nov 01 00 2 12s216ms 6s108ms [ User: pubeu - Total duration: 12s216ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1391689' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-01 00:59:56 Duration: 6s604ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1342112' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-01 00:14:06 Duration: 5s612ms Database: ctdprd51 User: pubeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 1,176 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 0 ERROR entries
- 0 WARNING entries
- 0 EVENTLOG entries
Events per 5 minutes
NO DATASET
Most Frequent Errors/Events
Key values
- 0 Max number of times the same event was reported
- 0 Total events found
Rank Times reported Error NO DATASET