pgBadger-
Global information
- Generated on Sun Nov 9 04:15:03 2025
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20251108
- Parsed 15,426 log entries in 2s
- Log start from 2025-11-08 00:00:01 to 2025-11-08 23:56:27
-
Overview
Global Stats
- 11 Number of unique normalized queries
- 18 Number of queries
- 14m47s Total query duration
- 2025-11-08 00:09:16 First query
- 2025-11-08 23:40:19 Last query
- 1 queries/s at 2025-11-08 00:09:16 Query peak
- 14m47s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 14m47s Execute total duration
- 0 Number of events
- 0 Number of unique normalized events
- 0 Max number of times the same event was reported
- 0 Number of cancellation
- 1 Total number of automatic vacuums
- 13 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 1,892 Total number of sessions
- 41 sessions at 2025-11-08 02:16:12 Session peak
- 40d19m6s Total duration of sessions
- 30m27s Average duration of sessions
- 0 Average queries per session
- 468ms Average queries duration per session
- 30m26s Average idle time per session
- 1,892 Total number of connections
- 9 connections/s at 2025-11-08 05:45:09 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2025-11-08 00:09:16 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2025-11-08 00:09:16 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 0 queries/s Query Peak
- Date
Queries duration
Key values
- 14m47s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Nov 08 00 2 0ms 9m14s 4m40s 0ms 0ms 9m21s 01 1 0ms 6s239ms 6s239ms 0ms 0ms 6s239ms 02 1 0ms 3m24s 3m24s 0ms 0ms 3m24s 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 7 0ms 7s805ms 6s793ms 0ms 5s265ms 27s39ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 1 0ms 11s362ms 11s362ms 0ms 0ms 11s362ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 1 0ms 6s384ms 6s384ms 0ms 0ms 6s384ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 0 0ms 0ms 0ms 0ms 0ms 0ms 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 4 0ms 15s374ms 10s973ms 0ms 13s276ms 15s374ms 23 1 0ms 6s258ms 6s258ms 0ms 0ms 6s258ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Nov 08 00 1 0 9m14s 0ms 0ms 9m14s 01 1 0 6s239ms 0ms 0ms 6s239ms 02 1 0 3m24s 0ms 0ms 3m24s 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 7 0 6s793ms 0ms 0ms 27s39ms 06 0 0 0ms 0ms 0ms 0ms 07 1 0 11s362ms 0ms 0ms 11s362ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 1 0 6s384ms 0ms 0ms 6s384ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 0 0 0ms 0ms 0ms 0ms 18 0 0 0ms 0ms 0ms 0ms 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 4 0 10s973ms 0ms 0ms 15s374ms 23 1 0 6s258ms 0ms 0ms 6s258ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Nov 08 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Nov 08 00 0 0 0.00 0.00% 01 0 1 1.00 0.00% 02 0 1 1.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 7 7.00 0.00% 06 0 0 0.00 0.00% 07 0 1 1.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 1 1.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 4 4.00 0.00% 23 0 1 1.00 0.00% Day Hour Count Average / Second Nov 08 00 78 0.02/s 01 82 0.02/s 02 79 0.02/s 03 74 0.02/s 04 76 0.02/s 05 96 0.03/s 06 80 0.02/s 07 84 0.02/s 08 76 0.02/s 09 81 0.02/s 10 78 0.02/s 11 81 0.02/s 12 77 0.02/s 13 80 0.02/s 14 78 0.02/s 15 77 0.02/s 16 79 0.02/s 17 78 0.02/s 18 79 0.02/s 19 81 0.02/s 20 68 0.02/s 21 74 0.02/s 22 80 0.02/s 23 76 0.02/s Day Hour Count Average Duration Average idle time Nov 08 00 78 31m42s 31m35s 01 82 29m42s 29m42s 02 79 30m20s 30m17s 03 74 32m11s 32m11s 04 76 31m5s 31m5s 05 96 26m10s 26m9s 06 80 29m42s 29m42s 07 84 28m21s 28m21s 08 76 31m25s 31m25s 09 81 29m59s 29m59s 10 78 31m11s 31m11s 11 81 30m9s 30m9s 12 77 31m21s 31m21s 13 80 30m47s 30m47s 14 78 30m52s 30m52s 15 77 30m53s 30m53s 16 79 30m51s 30m51s 17 78 30m55s 30m55s 18 79 30m53s 30m53s 19 81 30m26s 30m26s 20 68 30m34s 30m34s 21 74 31m26s 31m26s 22 80 29m53s 29m52s 23 76 31m23s 31m23s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2025-11-08 05:45:09 Date
Connections per database
Key values
- ctdprd51 Main Database
- 1,892 connections Total
Connections per user
Key values
- pubeu Main User
- 1,892 connections Total
-
Sessions
Simultaneous sessions
Key values
- 41 sessions Session Peak
- 2025-11-08 02:16:12 Date
Histogram of session times
Key values
- 1,824 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 1,892 sessions Total
Sessions per user
Key values
- pubeu Main User
- 1,892 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 1,892 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 59,799 buffers Checkpoint Peak
- 2025-11-08 23:54:49 Date
- 1619.047 seconds Highest write time
- 0.002 seconds Sync time
Checkpoints Wal files
Key values
- 35 files Wal files usage Peak
- 2025-11-08 23:54:49 Date
Checkpoints distance
Key values
- 1,115.25 Mo Distance Peak
- 2025-11-08 23:54:49 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Nov 08 00 313 31.563s 0.003s 31.634s 01 2,010 201.518s 0.002s 201.605s 02 131 13.298s 0.002s 13.329s 03 219 22.113s 0.002s 22.142s 04 101 10.292s 0.002s 10.322s 05 122 12.414s 0.002s 12.443s 06 47 4.883s 0.002s 4.914s 07 108 11s 0.002s 11.031s 08 178 18.012s 0.002s 18.042s 09 66 6.79s 0.002s 6.82s 10 2,402 240.682s 0.004s 240.732s 11 30 3.179s 0.002s 3.21s 12 123 12.496s 0.003s 12.527s 13 21 2.296s 0.002s 2.326s 14 7 0.787s 0.001s 0.802s 15 19 2.07s 0.002s 2.101s 16 24 2.58s 0.002s 2.611s 17 17 1.876s 0.002s 1.907s 18 5 0.617s 0.001s 0.632s 19 19 2.074s 0.002s 2.104s 20 37 3.879s 0.002s 3.911s 21 31 3.273s 0.002s 3.306s 22 298 30.049s 0.002s 30.082s 23 59,799 1,619.047s 0.002s 1,619.529s Day Hour Added Removed Recycled Synced files Longest sync Average sync Nov 08 00 0 0 0 69 0.001s 0.002s 01 0 0 1 35 0.001s 0.002s 02 0 0 0 33 0.001s 0.002s 03 0 0 0 39 0.001s 0.002s 04 0 0 0 27 0.001s 0.002s 05 0 0 0 25 0.001s 0.002s 06 0 0 0 16 0.001s 0.002s 07 0 0 0 24 0.001s 0.002s 08 0 0 0 37 0.001s 0.002s 09 0 0 0 26 0.001s 0.002s 10 0 0 1 30 0.001s 0.002s 11 0 0 0 16 0.001s 0.002s 12 0 0 0 24 0.001s 0.002s 13 0 0 0 14 0.001s 0.002s 14 0 0 0 6 0.001s 0.001s 15 0 0 0 16 0.001s 0.002s 16 0 0 0 16 0.001s 0.002s 17 0 0 0 12 0.001s 0.002s 18 0 0 0 5 0.001s 0.001s 19 0 0 0 12 0.001s 0.002s 20 0 0 0 17 0.001s 0.002s 21 0 0 0 16 0.001s 0.002s 22 0 0 0 33 0.001s 0.002s 23 0 0 35 30 0.001s 0.001s Day Hour Count Avg time (sec) Nov 08 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Nov 08 00 1,135.00 kB 2,326.50 kB 01 6,887.50 kB 13,044.00 kB 02 342.00 kB 10,617.50 kB 03 545.00 kB 8,716.50 kB 04 213.50 kB 7,101.00 kB 05 384.50 kB 5,794.50 kB 06 76.50 kB 4,737.50 kB 07 258.00 kB 3,870.50 kB 08 439.00 kB 3,204.00 kB 09 105.00 kB 2,646.00 kB 10 8,884.50 kB 16,820.00 kB 11 65.00 kB 13,636.50 kB 12 241.50 kB 11,091.50 kB 13 53.50 kB 8,994.50 kB 14 35.00 kB 7,675.00 kB 15 28.00 kB 6,566.50 kB 16 37.00 kB 5,325.50 kB 17 33.50 kB 4,320.50 kB 18 15.00 kB 3,687.00 kB 19 38.50 kB 3,157.00 kB 20 52.50 kB 2,567.00 kB 21 56.50 kB 2,090.00 kB 22 821.00 kB 1,833.00 kB 23 571,010.00 kB 571,010.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Nov 08 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
- 0 sec Highest CPU-cost analyze
Table
Database - Date
Average Autovacuum Duration
Key values
- 0 sec Highest CPU-cost vacuum
Table
Database - Date
Analyzes per table
Key values
- pubc.log_query (12) Main table analyzed (database ctdprd51)
- 13 analyzes Total
Vacuums per table
Key values
- pubc.log_query (1) Main table vacuumed on database ctdprd51
- 1 vacuums Total
Tuples removed per table
Key values
- unknown (0) Main table with removed tuples on database
- 0 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Nov 08 00 1 0 01 0 1 02 0 2 03 0 1 04 0 1 05 0 3 06 0 0 07 0 1 08 0 1 09 0 0 10 0 0 11 0 0 12 0 1 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 1 23 0 1 - 0 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 17 Total read queries
- 0 Total write queries
Queries by database
Key values
- ctdprd51 Main database
- 16 Requests
- 14m33s (ctdprd51)
- Main time consuming database
Queries by user
Key values
- pubeu Main user
- 24 Requests
User Request type Count Duration pubc Total 1 9m14s select 1 9m14s pubeu Total 24 6m27s select 24 6m27s qaeu Total 4 25s179ms select 4 25s179ms unknown Total 5 37s896ms others 1 6s606ms select 4 31s289ms Duration by user
Key values
- 9m14s (pubc) Main time consuming user
User Request type Count Duration pubc Total 1 9m14s select 1 9m14s pubeu Total 24 6m27s select 24 6m27s qaeu Total 4 25s179ms select 4 25s179ms unknown Total 5 37s896ms others 1 6s606ms select 4 31s289ms Queries by host
Key values
- unknown Main host
- 34 Requests
- 16m45s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 17 Requests
- 9m14s (psql)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2025-11-08 13:03:30 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 13 1000-10000ms duration
Slowest individual queries
Rank Duration Query 1 9m14s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2025-11-08 00:09:16 - Database: ctdprd51 - User: pubc - Application: psql ]
2 3m24s SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI &(2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CID' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '8343' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STRUCTURE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE_SMALL.PNG' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRIMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HEALTH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HAZARD' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LABORATORY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEMICAL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SAFETY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SUMMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LCSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATASHEET' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FORMULA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C24H38O4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C6H4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COOC8H17' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SYNONYMS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BIS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(117-81-7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '117817)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ETALON' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'VIEW' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MORE...' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'WEIGHT' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '390.6' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'G/MOL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COMPUTED' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2.2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'RELEASE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2021.10.14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATES' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CREATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2004-09-16' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20040916)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MODIFY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2025-09-27' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20250927)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DESCRIPTION' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHLATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DEHP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'CID' OR upper(l.acc_txt) LIKE '8343' OR upper(l.acc_txt) LIKE 'STRUCTURE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE_SMALL.PNG' OR upper(l.acc_txt) LIKE 'PRIMARY' OR upper(l.acc_txt) LIKE 'HAZARDS' OR upper(l.acc_txt) LIKE 'HEALTH' OR upper(l.acc_txt) LIKE 'HAZARD' OR upper(l.acc_txt) LIKE 'LABORATORY' OR upper(l.acc_txt) LIKE 'CHEMICAL' OR upper(l.acc_txt) LIKE 'SAFETY' OR upper(l.acc_txt) LIKE 'SUMMARY' OR upper(l.acc_txt) LIKE 'LCSS' OR upper(l.acc_txt) LIKE 'DATASHEET' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'FORMULA' OR upper(l.acc_txt) LIKE 'C24H38O4' OR upper(l.acc_txt) LIKE 'C6H4' OR upper(l.acc_txt) LIKE 'COOC8H17' OR upper(l.acc_txt) LIKE '2' OR upper(l.acc_txt) LIKE 'SYNONYMS' OR upper(l.acc_txt) LIKE 'BIS' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE '117-81-7' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'ETALON' OR upper(l.acc_txt) LIKE 'VIEW' OR upper(l.acc_txt) LIKE 'MORE...' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'WEIGHT' OR upper(l.acc_txt) LIKE '390.6' OR upper(l.acc_txt) LIKE 'G/MOL' OR upper(l.acc_txt) LIKE 'COMPUTED' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE '2.2' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'RELEASE' OR upper(l.acc_txt) LIKE '2021.10.14' OR upper(l.acc_txt) LIKE 'DATES' OR upper(l.acc_txt) LIKE 'CREATE' OR upper(l.acc_txt) LIKE '2004-09-16' OR upper(l.acc_txt) LIKE 'MODIFY' OR upper(l.acc_txt) LIKE '2025-09-27' OR upper(l.acc_txt) LIKE 'DESCRIPTION' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHLATE' OR upper(l.acc_txt) LIKE 'DEHP' OR upper(l.acc_txt) LIKE OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;[ Date: 2025-11-08 02:17:36 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
3 15s374ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;[ Date: 2025-11-08 22:16:56 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
4 15s241ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;[ Date: 2025-11-08 22:06:16 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
5 11s362ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'ESR1'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;[ Date: 2025-11-08 07:56:39 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
6 7s805ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;[ Date: 2025-11-08 05:49:14 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
7 7s444ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;[ Date: 2025-11-08 05:49:22 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
8 7s421ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;[ Date: 2025-11-08 05:44:11 - Bind query: yes ]
9 7s266ms select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;[ Date: 2025-11-08 05:44:19 - Database: ctdprd51 - User: qaeu - Bind query: yes ]
10 6s703ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-11-08 22:04:14 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
11 6s606ms VACUUM ANALYZE log_query_archive;[ Date: 2025-11-08 00:09:23 ]
12 6s573ms SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-11-08 22:04:16 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
13 6s384ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-11-08 12:01:38 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
14 6s258ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-11-08 23:40:19 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
15 6s256ms SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;[ Date: 2025-11-08 05:44:18 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
16 6s239ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;[ Date: 2025-11-08 01:30:11 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
17 6s94ms SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;[ Date: 2025-11-08 05:44:21 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
18 5s265ms SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1326607)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;[ Date: 2025-11-08 05:43:46 - Database: ctdprd51 - User: qaeu - Bind query: yes ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 9m14s 1 9m14s 9m14s 9m14s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Nov 08 00 1 9m14s 9m14s [ User: pubc - Total duration: 9m14s - Times executed: 1 ]
[ Application: psql - Total duration: 9m14s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-11-08 00:09:16 Duration: 9m14s Database: ctdprd51 User: pubc Application: psql
2 3m24s 1 3m24s 3m24s 3m24s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like or upper(l.acc_txt) like)) ii group by ii.cd;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Nov 08 02 1 3m24s 3m24s [ User: pubeu - Total duration: 3m24s - Times executed: 1 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI &(2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CID' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '8343' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STRUCTURE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE_SMALL.PNG' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRIMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HEALTH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HAZARD' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LABORATORY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEMICAL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SAFETY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SUMMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LCSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATASHEET' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FORMULA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C24H38O4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C6H4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COOC8H17' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SYNONYMS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BIS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(117-81-7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '117817)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ETALON' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'VIEW' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MORE...' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'WEIGHT' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '390.6' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'G/MOL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COMPUTED' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2.2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'RELEASE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2021.10.14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATES' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CREATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2004-09-16' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20040916)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MODIFY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2025-09-27' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20250927)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DESCRIPTION' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHLATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DEHP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'CID' OR upper(l.acc_txt) LIKE '8343' OR upper(l.acc_txt) LIKE 'STRUCTURE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE_SMALL.PNG' OR upper(l.acc_txt) LIKE 'PRIMARY' OR upper(l.acc_txt) LIKE 'HAZARDS' OR upper(l.acc_txt) LIKE 'HEALTH' OR upper(l.acc_txt) LIKE 'HAZARD' OR upper(l.acc_txt) LIKE 'LABORATORY' OR upper(l.acc_txt) LIKE 'CHEMICAL' OR upper(l.acc_txt) LIKE 'SAFETY' OR upper(l.acc_txt) LIKE 'SUMMARY' OR upper(l.acc_txt) LIKE 'LCSS' OR upper(l.acc_txt) LIKE 'DATASHEET' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'FORMULA' OR upper(l.acc_txt) LIKE 'C24H38O4' OR upper(l.acc_txt) LIKE 'C6H4' OR upper(l.acc_txt) LIKE 'COOC8H17' OR upper(l.acc_txt) LIKE '2' OR upper(l.acc_txt) LIKE 'SYNONYMS' OR upper(l.acc_txt) LIKE 'BIS' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE '117-81-7' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'ETALON' OR upper(l.acc_txt) LIKE 'VIEW' OR upper(l.acc_txt) LIKE 'MORE...' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'WEIGHT' OR upper(l.acc_txt) LIKE '390.6' OR upper(l.acc_txt) LIKE 'G/MOL' OR upper(l.acc_txt) LIKE 'COMPUTED' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE '2.2' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'RELEASE' OR upper(l.acc_txt) LIKE '2021.10.14' OR upper(l.acc_txt) LIKE 'DATES' OR upper(l.acc_txt) LIKE 'CREATE' OR upper(l.acc_txt) LIKE '2004-09-16' OR upper(l.acc_txt) LIKE 'MODIFY' OR upper(l.acc_txt) LIKE '2025-09-27' OR upper(l.acc_txt) LIKE 'DESCRIPTION' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHLATE' OR upper(l.acc_txt) LIKE 'DEHP' OR upper(l.acc_txt) LIKE OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-11-08 02:17:36 Duration: 3m24s Database: ctdprd51 User: pubeu Bind query: yes
3 30s616ms 2 15s241ms 15s374ms 15s308ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Nov 08 22 2 30s616ms 15s308ms [ User: pubeu - Total duration: 30s616ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;
Date: 2025-11-08 22:16:56 Duration: 15s374ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;
Date: 2025-11-08 22:06:16 Duration: 15s241ms Database: ctdprd51 User: pubeu Bind query: yes
4 18s882ms 3 6s239ms 6s384ms 6s294ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Nov 08 01 1 6s239ms 6s239ms 12 1 6s384ms 6s384ms 23 1 6s258ms 6s258ms [ User: pubeu - Total duration: 18s882ms - Times executed: 3 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 12:01:38 Duration: 6s384ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 23:40:19 Duration: 6s258ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 01:30:11 Duration: 6s239ms Database: ctdprd51 User: pubeu Bind query: yes
5 15s227ms 2 7s421ms 7s805ms 7s613ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Nov 08 05 2 15s227ms 7s613ms [ User: pubeu - Total duration: 7s805ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:49:14 Duration: 7s805ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:44:11 Duration: 7s421ms Bind query: yes
6 14s711ms 2 7s266ms 7s444ms 7s355ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Nov 08 05 2 14s711ms 7s355ms [ User: pubeu - Total duration: 7s444ms - Times executed: 1 ]
[ User: qaeu - Total duration: 7s266ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:49:22 Duration: 7s444ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:44:19 Duration: 7s266ms Database: ctdprd51 User: qaeu Bind query: yes
7 13s276ms 2 6s573ms 6s703ms 6s638ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Nov 08 22 2 13s276ms 6s638ms [ User: pubeu - Total duration: 13s276ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 22:04:14 Duration: 6s703ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 22:04:16 Duration: 6s573ms Database: ctdprd51 User: pubeu Bind query: yes
8 12s351ms 2 6s94ms 6s256ms 6s175ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Nov 08 05 2 12s351ms 6s175ms [ User: pubeu - Total duration: 12s351ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-08 05:44:18 Duration: 6s256ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-08 05:44:21 Duration: 6s94ms Database: ctdprd51 User: pubeu Bind query: yes
9 11s362ms 1 11s362ms 11s362ms 11s362ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gli.term_id gene_id from term_label gli where gli.object_type_id = ? and upper(gli.nm) like ?))) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Nov 08 07 1 11s362ms 11s362ms [ User: pubeu - Total duration: 11s362ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'ESR1'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2025-11-08 07:56:39 Duration: 11s362ms Database: ctdprd51 User: pubeu Bind query: yes
10 6s606ms 1 6s606ms 6s606ms 6s606ms vacuum analyze log_query_archive;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Nov 08 00 1 6s606ms 6s606ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-11-08 00:09:23 Duration: 6s606ms
11 5s265ms 1 5s265ms 5s265ms 5s265ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Nov 08 05 1 5s265ms 5s265ms [ User: qaeu - Total duration: 5s265ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1326607)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-11-08 05:43:46 Duration: 5s265ms Database: ctdprd51 User: qaeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 3 18s882ms 6s239ms 6s384ms 6s294ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Nov 08 01 1 6s239ms 6s239ms 12 1 6s384ms 6s384ms 23 1 6s258ms 6s258ms [ User: pubeu - Total duration: 18s882ms - Times executed: 3 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 12:01:38 Duration: 6s384ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 23:40:19 Duration: 6s258ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 01:30:11 Duration: 6s239ms Database: ctdprd51 User: pubeu Bind query: yes
2 2 30s616ms 15s241ms 15s374ms 15s308ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Nov 08 22 2 30s616ms 15s308ms [ User: pubeu - Total duration: 30s616ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;
Date: 2025-11-08 22:16:56 Duration: 15s374ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;
Date: 2025-11-08 22:06:16 Duration: 15s241ms Database: ctdprd51 User: pubeu Bind query: yes
3 2 15s227ms 7s421ms 7s805ms 7s613ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Nov 08 05 2 15s227ms 7s613ms [ User: pubeu - Total duration: 7s805ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:49:14 Duration: 7s805ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:44:11 Duration: 7s421ms Bind query: yes
4 2 14s711ms 7s266ms 7s444ms 7s355ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Nov 08 05 2 14s711ms 7s355ms [ User: pubeu - Total duration: 7s444ms - Times executed: 1 ]
[ User: qaeu - Total duration: 7s266ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:49:22 Duration: 7s444ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:44:19 Duration: 7s266ms Database: ctdprd51 User: qaeu Bind query: yes
5 2 13s276ms 6s573ms 6s703ms 6s638ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Nov 08 22 2 13s276ms 6s638ms [ User: pubeu - Total duration: 13s276ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 22:04:14 Duration: 6s703ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 22:04:16 Duration: 6s573ms Database: ctdprd51 User: pubeu Bind query: yes
6 2 12s351ms 6s94ms 6s256ms 6s175ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Nov 08 05 2 12s351ms 6s175ms [ User: pubeu - Total duration: 12s351ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-08 05:44:18 Duration: 6s256ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-08 05:44:21 Duration: 6s94ms Database: ctdprd51 User: pubeu Bind query: yes
7 1 9m14s 9m14s 9m14s 9m14s select maint_query_logs_archive ();Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Nov 08 00 1 9m14s 9m14s [ User: pubc - Total duration: 9m14s - Times executed: 1 ]
[ Application: psql - Total duration: 9m14s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-11-08 00:09:16 Duration: 9m14s Database: ctdprd51 User: pubc Application: psql
8 1 3m24s 3m24s 3m24s 3m24s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like or upper(l.acc_txt) like)) ii group by ii.cd;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Nov 08 02 1 3m24s 3m24s [ User: pubeu - Total duration: 3m24s - Times executed: 1 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI &(2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CID' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '8343' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STRUCTURE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE_SMALL.PNG' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRIMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HEALTH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HAZARD' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LABORATORY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEMICAL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SAFETY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SUMMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LCSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATASHEET' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FORMULA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C24H38O4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C6H4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COOC8H17' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SYNONYMS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BIS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(117-81-7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '117817)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ETALON' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'VIEW' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MORE...' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'WEIGHT' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '390.6' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'G/MOL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COMPUTED' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2.2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'RELEASE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2021.10.14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATES' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CREATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2004-09-16' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20040916)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MODIFY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2025-09-27' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20250927)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DESCRIPTION' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHLATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DEHP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'CID' OR upper(l.acc_txt) LIKE '8343' OR upper(l.acc_txt) LIKE 'STRUCTURE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE_SMALL.PNG' OR upper(l.acc_txt) LIKE 'PRIMARY' OR upper(l.acc_txt) LIKE 'HAZARDS' OR upper(l.acc_txt) LIKE 'HEALTH' OR upper(l.acc_txt) LIKE 'HAZARD' OR upper(l.acc_txt) LIKE 'LABORATORY' OR upper(l.acc_txt) LIKE 'CHEMICAL' OR upper(l.acc_txt) LIKE 'SAFETY' OR upper(l.acc_txt) LIKE 'SUMMARY' OR upper(l.acc_txt) LIKE 'LCSS' OR upper(l.acc_txt) LIKE 'DATASHEET' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'FORMULA' OR upper(l.acc_txt) LIKE 'C24H38O4' OR upper(l.acc_txt) LIKE 'C6H4' OR upper(l.acc_txt) LIKE 'COOC8H17' OR upper(l.acc_txt) LIKE '2' OR upper(l.acc_txt) LIKE 'SYNONYMS' OR upper(l.acc_txt) LIKE 'BIS' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE '117-81-7' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'ETALON' OR upper(l.acc_txt) LIKE 'VIEW' OR upper(l.acc_txt) LIKE 'MORE...' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'WEIGHT' OR upper(l.acc_txt) LIKE '390.6' OR upper(l.acc_txt) LIKE 'G/MOL' OR upper(l.acc_txt) LIKE 'COMPUTED' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE '2.2' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'RELEASE' OR upper(l.acc_txt) LIKE '2021.10.14' OR upper(l.acc_txt) LIKE 'DATES' OR upper(l.acc_txt) LIKE 'CREATE' OR upper(l.acc_txt) LIKE '2004-09-16' OR upper(l.acc_txt) LIKE 'MODIFY' OR upper(l.acc_txt) LIKE '2025-09-27' OR upper(l.acc_txt) LIKE 'DESCRIPTION' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHLATE' OR upper(l.acc_txt) LIKE 'DEHP' OR upper(l.acc_txt) LIKE OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-11-08 02:17:36 Duration: 3m24s Database: ctdprd51 User: pubeu Bind query: yes
9 1 11s362ms 11s362ms 11s362ms 11s362ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gli.term_id gene_id from term_label gli where gli.object_type_id = ? and upper(gli.nm) like ?))) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Nov 08 07 1 11s362ms 11s362ms [ User: pubeu - Total duration: 11s362ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'ESR1'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2025-11-08 07:56:39 Duration: 11s362ms Database: ctdprd51 User: pubeu Bind query: yes
10 1 6s606ms 6s606ms 6s606ms 6s606ms vacuum analyze log_query_archive;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Nov 08 00 1 6s606ms 6s606ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-11-08 00:09:23 Duration: 6s606ms
11 1 5s265ms 5s265ms 5s265ms 5s265ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Nov 08 05 1 5s265ms 5s265ms [ User: qaeu - Total duration: 5s265ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1326607)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-11-08 05:43:46 Duration: 5s265ms Database: ctdprd51 User: qaeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 9m14s 9m14s 9m14s 1 9m14s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Nov 08 00 1 9m14s 9m14s [ User: pubc - Total duration: 9m14s - Times executed: 1 ]
[ Application: psql - Total duration: 9m14s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2025-11-08 00:09:16 Duration: 9m14s Database: ctdprd51 User: pubc Application: psql
2 3m24s 3m24s 3m24s 1 3m24s select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like ? or upper(l.acc_txt) like or upper(l.acc_txt) like)) ii group by ii.cd;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Nov 08 02 1 3m24s 3m24s [ User: pubeu - Total duration: 3m24s - Times executed: 1 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & PUBCHEM & CID & 8343 & STRUCTURE & DI &(2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE_SMALL.PNG & PRIMARY & HAZARDS & HEALTH & HAZARD & LABORATORY & CHEMICAL & SAFETY & SUMMARY & LCSS & DATASHEET & MOLECULAR & FORMULA & C24H38O4 & C6H4 & COOC8H17 & 2 & SYNONYMS & BIS & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & (117-81-7 | 117817) & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHALATE & ETALON & VIEW & MORE... & MOLECULAR & WEIGHT & 390.6 & G/MOL & COMPUTED & BY & PUBCHEM & 2.2 & PUBCHEM & RELEASE & 2021.10.14 & DATES & CREATE & (2004-09-16 | 20040916) & MODIFY & (2025-09-27 | 20250927) & DESCRIPTION & DI & (2-ETHYLHEXYL | 2ETHYLHEXYL) & PHTHLATE & DEHP') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CID' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '8343' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'STRUCTURE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE_SMALL.PNG' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PRIMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HEALTH' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'HAZARD' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LABORATORY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CHEMICAL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SAFETY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SUMMARY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'LCSS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATASHEET' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'FORMULA' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C24H38O4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'C6H4' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COOC8H17' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'SYNONYMS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BIS' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(117-81-7' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '117817)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHALATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'ETALON' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'VIEW' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MORE...' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MOLECULAR' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'WEIGHT' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '390.6' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'G/MOL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'COMPUTED' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'BY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2.2' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PUBCHEM' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'RELEASE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2021.10.14' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DATES' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CREATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2004-09-16' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20040916)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'MODIFY' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2025-09-27' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '20250927)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DESCRIPTION' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(2-ETHYLHEXYL' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '2ETHYLHEXYL)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'PHTHLATE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DEHP' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'DI')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'CID' OR upper(l.acc_txt) LIKE '8343' OR upper(l.acc_txt) LIKE 'STRUCTURE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE_SMALL.PNG' OR upper(l.acc_txt) LIKE 'PRIMARY' OR upper(l.acc_txt) LIKE 'HAZARDS' OR upper(l.acc_txt) LIKE 'HEALTH' OR upper(l.acc_txt) LIKE 'HAZARD' OR upper(l.acc_txt) LIKE 'LABORATORY' OR upper(l.acc_txt) LIKE 'CHEMICAL' OR upper(l.acc_txt) LIKE 'SAFETY' OR upper(l.acc_txt) LIKE 'SUMMARY' OR upper(l.acc_txt) LIKE 'LCSS' OR upper(l.acc_txt) LIKE 'DATASHEET' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'FORMULA' OR upper(l.acc_txt) LIKE 'C24H38O4' OR upper(l.acc_txt) LIKE 'C6H4' OR upper(l.acc_txt) LIKE 'COOC8H17' OR upper(l.acc_txt) LIKE '2' OR upper(l.acc_txt) LIKE 'SYNONYMS' OR upper(l.acc_txt) LIKE 'BIS' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE '117-81-7' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHALATE' OR upper(l.acc_txt) LIKE 'ETALON' OR upper(l.acc_txt) LIKE 'VIEW' OR upper(l.acc_txt) LIKE 'MORE...' OR upper(l.acc_txt) LIKE 'MOLECULAR' OR upper(l.acc_txt) LIKE 'WEIGHT' OR upper(l.acc_txt) LIKE '390.6' OR upper(l.acc_txt) LIKE 'G/MOL' OR upper(l.acc_txt) LIKE 'COMPUTED' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE '2.2' OR upper(l.acc_txt) LIKE 'PUBCHEM' OR upper(l.acc_txt) LIKE 'RELEASE' OR upper(l.acc_txt) LIKE '2021.10.14' OR upper(l.acc_txt) LIKE 'DATES' OR upper(l.acc_txt) LIKE 'CREATE' OR upper(l.acc_txt) LIKE '2004-09-16' OR upper(l.acc_txt) LIKE 'MODIFY' OR upper(l.acc_txt) LIKE '2025-09-27' OR upper(l.acc_txt) LIKE 'DESCRIPTION' OR upper(l.acc_txt) LIKE 'DI' OR upper(l.acc_txt) LIKE '2-ETHYLHEXYL' OR upper(l.acc_txt) LIKE 'PHTHLATE' OR upper(l.acc_txt) LIKE 'DEHP' OR upper(l.acc_txt) LIKE OR upper(l.acc_txt) LIKE)) ii GROUP BY ii.cd;
Date: 2025-11-08 02:17:36 Duration: 3m24s Database: ctdprd51 User: pubeu Bind query: yes
3 15s241ms 15s374ms 15s308ms 2 30s616ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Nov 08 22 2 30s616ms 15s308ms [ User: pubeu - Total duration: 30s616ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;
Date: 2025-11-08 22:16:56 Duration: 15s374ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt;
Date: 2025-11-08 22:06:16 Duration: 15s241ms Database: ctdprd51 User: pubeu Bind query: yes
4 11s362ms 11s362ms 11s362ms 1 11s362ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where exists ( select ? from gene_chem_ref_gene_form gf where gf.gene_chem_reference_id = gcr.id and gf.gene_id = gcr.gene_id and gf.actor_form_type_nm in ( select tc.nm from actor_form_type tp, actor_form_type tc where tc.subset_left_no between tp.subset_left_no and tp.subset_right_no and (tp.nm = ?))) and gcr.gene_id = any (array (( select gli.term_id gene_id from term_label gli where gli.object_type_id = ? and upper(gli.nm) like ?))) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Nov 08 07 1 11s362ms 11s362ms [ User: pubeu - Total duration: 11s362ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ EXISTS ( SELECT /* CIQH.getIxnGeneFormTypeWhere */ 1 FROM gene_chem_ref_gene_form gf WHERE gf.gene_chem_reference_id = gcr.id AND gf.gene_id = gcr.gene_id AND gf.actor_form_type_nm IN ( SELECT tc.nm FROM actor_form_type tp, actor_form_type tc WHERE tc.subset_left_no BETWEEN tp.subset_left_no AND tp.subset_right_no AND (tp.nm = 'protein'))) AND gcr.gene_id = ANY (ARRAY (( SELECT /* CIQH.getIxnGeneWhereEquals.Label */ gli.term_id gene_id FROM term_label gli WHERE gli.object_type_id = 4 AND UPPER(gli.nm) LIKE 'ESR1'))) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 500;
Date: 2025-11-08 07:56:39 Duration: 11s362ms Database: ctdprd51 User: pubeu Bind query: yes
5 7s421ms 7s805ms 7s613ms 2 15s227ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Nov 08 05 2 15s227ms 7s613ms [ User: pubeu - Total duration: 7s805ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:49:14 Duration: 7s805ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:44:11 Duration: 7s421ms Bind query: yes
6 7s266ms 7s444ms 7s355ms 2 14s711ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Nov 08 05 2 14s711ms 7s355ms [ User: pubeu - Total duration: 7s444ms - Times executed: 1 ]
[ User: qaeu - Total duration: 7s266ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:49:22 Duration: 7s444ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2025-11-08 05:44:19 Duration: 7s266ms Database: ctdprd51 User: qaeu Bind query: yes
7 6s573ms 6s703ms 6s638ms 2 13s276ms select g.nm genesymbol, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, g.id geneid, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, i.id ixnid, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by g.nm_sort, c.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Nov 08 22 2 13s276ms 6s638ms [ User: pubeu - Total duration: 13s276ms - Times executed: 2 ]
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 22:04:14 Duration: 6s703ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGeneIxnsDAO */ g.nm geneSymbol, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, g.id geneId, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casRN, c.id chemId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, i.id ixnId, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE gcr.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1424283') GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 22:04:16 Duration: 6s573ms Database: ctdprd51 User: pubeu Bind query: yes
8 6s606ms 6s606ms 6s606ms 1 6s606ms vacuum analyze log_query_archive;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Nov 08 00 1 6s606ms 6s606ms -
VACUUM ANALYZE log_query_archive;
Date: 2025-11-08 00:09:23 Duration: 6s606ms
9 6s239ms 6s384ms 6s294ms 3 18s882ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Nov 08 01 1 6s239ms 6s239ms 12 1 6s384ms 6s384ms 23 1 6s258ms 6s258ms [ User: pubeu - Total duration: 18s882ms - Times executed: 3 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 12:01:38 Duration: 6s384ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 23:40:19 Duration: 6s258ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2025-11-08 01:30:11 Duration: 6s239ms Database: ctdprd51 User: pubeu Bind query: yes
10 6s94ms 6s256ms 6s175ms 2 12s351ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Nov 08 05 2 12s351ms 6s175ms [ User: pubeu - Total duration: 12s351ms - Times executed: 2 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-08 05:44:18 Duration: 6s256ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1324866' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2025-11-08 05:44:21 Duration: 6s94ms Database: ctdprd51 User: pubeu Bind query: yes
11 5s265ms 5s265ms 5s265ms 1 5s265ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Nov 08 05 1 5s265ms 5s265ms [ User: qaeu - Total duration: 5s265ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1326607)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2025-11-08 05:43:46 Duration: 5s265ms Database: ctdprd51 User: qaeu Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 0ms 1 0ms 0ms 0ms ;Times Reported Time consuming bind #1
Day Hour Count Duration Avg duration Nov 08 02 1 0ms 0ms [ User: pubeu - Total duration: 3m24s - Times executed: 1 ]
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;
Date: Duration: 0ms Database: postgres User: ctdprd51 Remote: pubeu
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Events
Log levels
Key values
- 7,698 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 0 ERROR entries
- 0 WARNING entries
- 0 EVENTLOG entries
Events per 5 minutes
NO DATASET
Most Frequent Errors/Events
Key values
- 0 Max number of times the same event was reported
- 0 Total events found
Rank Times reported Error NO DATASET