pgBadger-
Global information
- Generated on Sun Feb 8 04:15:03 2026
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20260207
- Parsed 15,741 log entries in 2s
- Log start from 2026-02-07 00:00:19 to 2026-02-07 23:59:21
-
Overview
Global Stats
- 61 Number of unique normalized queries
- 69 Number of queries
- 1h45m20s Total query duration
- 2026-02-07 00:09:31 First query
- 2026-02-07 19:46:29 Last query
- 1 queries/s at 2026-02-07 18:11:05 Query peak
- 1h45m20s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 1h45m20s Execute total duration
- 1 Number of events
- 1 Number of unique normalized events
- 1 Max number of times the same event was reported
- 0 Number of cancellation
- 2 Total number of automatic vacuums
- 13 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 1,913 Total number of sessions
- 49 sessions at 2026-02-07 00:05:41 Session peak
- 40d2h26m54s Total duration of sessions
- 30m11s Average duration of sessions
- 0 Average queries per session
- 3s303ms Average queries duration per session
- 30m7s Average idle time per session
- 1,913 Total number of connections
- 14 connections/s at 2026-02-07 23:07:41 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2026-02-07 18:11:05 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2026-02-07 09:30:26 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2026-02-07 18:11:05 Date
Queries duration
Key values
- 1h45m20s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 07 00 2 0ms 9m11s 4m39s 0ms 0ms 9m18s 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 4 0ms 7s449ms 7s348ms 0ms 7s449ms 14s645ms 06 3 0ms 5s241ms 5s140ms 0ms 0ms 15s421ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 1 0ms 5s180ms 5s180ms 0ms 0ms 5s180ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 2 0ms 5s900ms 5s874ms 0ms 0ms 11s749ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 4 0ms 5s123ms 5s86ms 0ms 10s114ms 10s231ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 32 0ms 26m28s 1m30s 1m13s 2m11s 26m28s 19 21 0ms 26m14s 2m13s 1m27s 1m50s 26m55s 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 07 00 1 0 9m11s 0ms 0ms 9m11s 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 4 0 7s348ms 0ms 0ms 14s645ms 06 3 0 5s140ms 0ms 0ms 15s421ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 1 0 5s180ms 0ms 0ms 5s180ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 0 0 0ms 0ms 0ms 0ms 14 2 0 5s874ms 0ms 0ms 11s749ms 15 0 0 0ms 0ms 0ms 0ms 16 4 0 5s86ms 0ms 0ms 10s231ms 17 0 0 0ms 0ms 0ms 0ms 18 0 32 1m30s 56s588ms 1m13s 26m28s 19 0 21 2m13s 53s878ms 1m27s 26m55s 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 07 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Feb 07 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 4 4.00 0.00% 06 0 3 3.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 1 1.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 2 2.00 0.00% 15 0 0 0.00 0.00% 16 0 4 4.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Feb 07 00 83 0.02/s 01 80 0.02/s 02 80 0.02/s 03 77 0.02/s 04 77 0.02/s 05 91 0.03/s 06 74 0.02/s 07 77 0.02/s 08 80 0.02/s 09 77 0.02/s 10 79 0.02/s 11 78 0.02/s 12 77 0.02/s 13 78 0.02/s 14 77 0.02/s 15 79 0.02/s 16 79 0.02/s 17 77 0.02/s 18 81 0.02/s 19 75 0.02/s 20 77 0.02/s 21 81 0.02/s 22 77 0.02/s 23 102 0.03/s Day Hour Count Average Duration Average idle time Feb 07 00 83 29m49s 29m42s 01 80 30m49s 30m49s 02 80 30m30s 30m30s 03 77 31m9s 31m9s 04 77 30m23s 30m23s 05 91 26m39s 26m39s 06 74 30m20s 30m20s 07 77 30m48s 30m48s 08 80 30m53s 30m53s 09 77 31m22s 31m22s 10 79 31m24s 31m24s 11 78 30m51s 30m51s 12 77 31m19s 31m19s 13 78 31m38s 31m38s 14 77 30m51s 30m51s 15 79 30m47s 30m47s 16 79 30m22s 30m22s 17 77 30m52s 30m52s 18 80 30m24s 29m48s 19 76 32m 31m23s 20 77 31m1s 31m1s 21 81 28m45s 28m45s 22 77 30m42s 30m42s 23 102 23m26s 23m26s -
Connections
Established Connections
Key values
- 14 connections Connection Peak
- 2026-02-07 23:07:41 Date
Connections per database
Key values
- ctdprd51 Main Database
- 1,913 connections Total
Connections per user
Key values
- pubeu Main User
- 1,913 connections Total
-
Sessions
Simultaneous sessions
Key values
- 49 sessions Session Peak
- 2026-02-07 00:05:41 Date
Histogram of session times
Key values
- 1,817 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 1,913 sessions Total
Sessions per user
Key values
- pubeu Main User
- 1,913 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 1,913 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 5,509 buffers Checkpoint Peak
- 2026-02-07 19:54:27 Date
- 551.691 seconds Highest write time
- 0.002 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2026-02-07 12:15:11 Date
Checkpoints distance
Key values
- 104.84 Mo Distance Peak
- 2026-02-07 08:23:38 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Feb 07 00 321 32.24s 0.003s 32.311s 01 145 14.697s 0.002s 14.727s 02 167 16.905s 0.002s 16.935s 03 170 17.2s 0.002s 17.23s 04 220 22.21s 0.002s 22.24s 05 173 17.51s 0.002s 17.541s 06 121 12.296s 0.002s 12.326s 07 102 10.412s 0.002s 10.443s 08 5,100 510.729s 0.003s 510.812s 09 106 10.786s 0.002s 10.815s 10 4,987 499.458s 0.003s 499.533s 11 46 4.778s 0.002s 4.809s 12 861 86.395s 0.003s 86.429s 13 29 3.081s 0.002s 3.112s 14 20 2.171s 0.002s 2.201s 15 4,161 416.641s 0.003s 416.679s 16 1,283 128.68s 0.003s 128.753s 17 31 3.273s 0.002s 3.304s 18 14 1.487s 0.001s 1.502s 19 5,509 551.691s 0.001s 551.706s 20 30 3.169s 0.002s 3.199s 21 116 11.796s 0.002s 11.826s 22 44 4.578s 0.002s 4.608s 23 93 9.489s 0.002s 9.518s Day Hour Added Removed Recycled Synced files Longest sync Average sync Feb 07 00 0 0 0 61 0.001s 0.002s 01 0 0 0 24 0.001s 0.002s 02 0 0 0 36 0.001s 0.002s 03 0 0 0 39 0.001s 0.002s 04 0 0 0 27 0.001s 0.002s 05 0 0 0 34 0.001s 0.002s 06 0 0 0 26 0.001s 0.002s 07 0 0 0 23 0.001s 0.002s 08 0 4 0 29 0.001s 0.002s 09 0 0 0 26 0.001s 0.002s 10 0 2 0 33 0.001s 0.002s 11 0 0 0 17 0.001s 0.002s 12 0 1 0 26 0.001s 0.002s 13 0 0 0 16 0.001s 0.002s 14 0 0 0 14 0.001s 0.002s 15 0 2 0 27 0.002s 0.002s 16 0 1 0 26 0.001s 0.002s 17 0 0 0 15 0.001s 0.002s 18 0 0 0 12 0.001s 0.001s 19 0 0 0 7 0.001s 0.001s 20 0 0 0 13 0.001s 0.002s 21 0 0 0 27 0.001s 0.002s 22 0 0 0 17 0.001s 0.002s 23 0 0 0 23 0.001s 0.002s Day Hour Count Avg time (sec) Feb 07 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Feb 07 00 1,497.00 kB 5,558.00 kB 01 173.00 kB 4,535.50 kB 02 348.50 kB 3,725.00 kB 03 303.50 kB 3,069.50 kB 04 576.00 kB 2,614.50 kB 05 429.00 kB 2,179.50 kB 06 289.50 kB 1,840.50 kB 07 233.50 kB 1,520.00 kB 08 26,887.00 kB 50,999.00 kB 09 266.00 kB 41,359.00 kB 10 22,183.50 kB 39,778.50 kB 11 65.50 kB 37,868.00 kB 12 2,735.00 kB 30,951.00 kB 13 43.00 kB 25,321.00 kB 14 39.50 kB 20,518.00 kB 15 21,959.00 kB 41,684.50 kB 16 4,780.00 kB 34,673.00 kB 17 61.50 kB 28,095.00 kB 18 42.00 kB 23,962.00 kB 19 65.00 kB 21,573.00 kB 20 51.50 kB 18,452.00 kB 21 270.50 kB 14,995.00 kB 22 100.00 kB 12,165.50 kB 23 235.00 kB 9,884.50 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Feb 07 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0.17 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment
Database ctdprd51 - 2026-02-07 10:19:13 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 0.17 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment
Database ctdprd51 - 2026-02-07 10:19:13 Date
Analyzes per table
Key values
- pubc.log_query (13) Main table analyzed (database ctdprd51)
- 13 analyzes Total
Vacuums per table
Key values
- pub1.term_set_enrichment (1) Main table vacuumed on database ctdprd51
- 2 vacuums Total
Tuples removed per table
Key values
- pubc.log_query (1) Main table with removed tuples on database ctdprd51
- 1 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Feb 07 00 0 1 01 0 1 02 1 1 03 0 1 04 0 1 05 0 3 06 0 0 07 0 1 08 0 1 09 0 0 10 1 1 11 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 1 22 0 0 23 0 1 - 0.17 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 15 Total read queries
- 53 Total write queries
Queries by database
Key values
- unknown Main database
- 58 Requests
- 1h34m58s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 97 Requests
User Request type Count Duration postgres Total 9 8m55s copy to 9 8m55s pubc Total 1 9m11s select 1 9m11s pubeu Total 22 2m43s select 22 2m43s qaeu Total 3 20s20ms select 3 20s20ms unknown Total 97 1h42m31s copy to 80 1h40m14s others 1 6s790ms select 16 2m9s Duration by user
Key values
- 1h42m31s (unknown) Main time consuming user
User Request type Count Duration postgres Total 9 8m55s copy to 9 8m55s pubc Total 1 9m11s select 1 9m11s pubeu Total 22 2m43s select 22 2m43s qaeu Total 3 20s20ms select 3 20s20ms unknown Total 97 1h42m31s copy to 80 1h40m14s others 1 6s790ms select 16 2m9s Queries by host
Key values
- unknown Main host
- 132 Requests
- 2h3m41s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 67 Requests
- 1h35m50s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2026-02-07 06:48:39 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 44 > 10000ms duration
Slowest individual queries
Rank Duration Query 1 26m28s COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-07 18:43:56 ]
2 26m14s COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-07 19:29:04 ]
3 9m11s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2026-02-07 00:09:31 - Database: ctdprd51 - User: pubc - Application: psql ]
4 7m33s COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-02-07 18:56:55 ]
5 7m33s COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-02-07 19:42:02 ]
6 1m50s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-02-07 19:45:50 ]
7 1m41s COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2026-02-07 18:47:22 ]
8 1m41s COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2026-02-07 19:32:30 ]
9 1m13s COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;[ Date: 2026-02-07 18:15:07 ]
10 1m13s COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;[ Date: 2026-02-07 19:00:29 ]
11 1m5s COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;[ Date: 2026-02-07 18:16:13 ]
12 1m4s COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;[ Date: 2026-02-07 19:01:34 ]
13 55s341ms COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-02-07 19:43:23 ]
14 54s249ms COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-07 18:13:45 ]
15 53s986ms COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-07 18:59:07 ]
16 44s871ms COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;[ Date: 2026-02-07 18:48:40 ]
17 44s525ms COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;[ Date: 2026-02-07 19:33:47 ]
18 42s492ms COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;[ Date: 2026-02-07 18:17:28 ]
19 42s435ms COPY pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;[ Date: 2026-02-07 19:02:49 ]
20 41s71ms COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;[ Date: 2026-02-07 19:29:50 ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 26m28s 1 26m28s 26m28s 26m28s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 07 18 1 26m28s 26m28s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:43:56 Duration: 26m28s
2 26m14s 1 26m14s 26m14s 26m14s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 07 19 1 26m14s 26m14s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 19:29:04 Duration: 26m14s
3 9m11s 1 9m11s 9m11s 9m11s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 07 00 1 9m11s 9m11s [ User: pubc - Total duration: 9m11s - Times executed: 1 ]
[ Application: psql - Total duration: 9m11s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-02-07 00:09:31 Duration: 9m11s Database: ctdprd51 User: pubc Application: psql
4 7m33s 1 7m33s 7m33s 7m33s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 07 18 1 7m33s 7m33s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 18:56:55 Duration: 7m33s
5 7m33s 1 7m33s 7m33s 7m33s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 07 19 1 7m33s 7m33s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 19:42:02 Duration: 7m33s
6 1m50s 1 1m50s 1m50s 1m50s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 07 19 1 1m50s 1m50s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-02-07 19:45:50 Duration: 1m50s
7 1m41s 1 1m41s 1m41s 1m41s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 07 18 1 1m41s 1m41s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-07 18:47:22 Duration: 1m41s
8 1m41s 1 1m41s 1m41s 1m41s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 07 19 1 1m41s 1m41s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-07 19:32:30 Duration: 1m41s
9 1m13s 1 1m13s 1m13s 1m13s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 07 18 1 1m13s 1m13s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-07 18:15:07 Duration: 1m13s
10 1m13s 1 1m13s 1m13s 1m13s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 07 19 1 1m13s 1m13s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-07 19:00:29 Duration: 1m13s
11 1m5s 1 1m5s 1m5s 1m5s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 07 18 1 1m5s 1m5s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-07 18:16:13 Duration: 1m5s
12 1m4s 1 1m4s 1m4s 1m4s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 07 19 1 1m4s 1m4s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-07 19:01:34 Duration: 1m4s
13 55s341ms 1 55s341ms 55s341ms 55s341ms copy pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 07 19 1 55s341ms 55s341ms -
COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 19:43:23 Duration: 55s341ms
14 54s249ms 1 54s249ms 54s249ms 54s249ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 07 18 1 54s249ms 54s249ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:13:45 Duration: 54s249ms
15 53s986ms 1 53s986ms 53s986ms 53s986ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 07 18 1 53s986ms 53s986ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:59:07 Duration: 53s986ms
16 44s871ms 1 44s871ms 44s871ms 44s871ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 07 18 1 44s871ms 44s871ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-07 18:48:40 Duration: 44s871ms
17 44s525ms 1 44s525ms 44s525ms 44s525ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 07 19 1 44s525ms 44s525ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-07 19:33:47 Duration: 44s525ms
18 42s492ms 1 42s492ms 42s492ms 42s492ms copy pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 07 18 1 42s492ms 42s492ms -
COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-07 18:17:28 Duration: 42s492ms
19 42s435ms 1 42s435ms 42s435ms 42s435ms copy pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 07 19 1 42s435ms 42s435ms -
COPY pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-07 19:02:49 Duration: 42s435ms
20 41s71ms 1 41s71ms 41s71ms 41s71ms copy pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 07 19 1 41s71ms 41s71ms -
COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-02-07 19:29:50 Duration: 41s71ms
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 6 30s834ms 5s52ms 5s241ms 5s139ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 07 06 3 15s421ms 5s140ms 09 1 5s180ms 5s180ms 16 2 10s231ms 5s115ms [ User: pubeu - Total duration: 25s707ms - Times executed: 5 ]
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1361003' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-02-07 06:57:41 Duration: 5s241ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1323954' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-02-07 09:30:26 Duration: 5s180ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1361003' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-02-07 06:57:36 Duration: 5s127ms Bind query: yes
2 2 14s800ms 7s350ms 7s449ms 7s400ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 07 05 2 14s800ms 7s400ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-07 05:44:03 Duration: 7s449ms Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-07 05:49:09 Duration: 7s350ms Bind query: yes
3 2 14s594ms 7s295ms 7s299ms 7s297ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 07 05 2 14s594ms 7s297ms [ User: qaeu - Total duration: 7s299ms - Times executed: 1 ]
[ User: pubeu - Total duration: 7s295ms - Times executed: 1 ]
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-07 05:43:55 Duration: 7s299ms Database: ctdprd51 User: qaeu Bind query: yes
-
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-07 05:49:01 Duration: 7s295ms Database: ctdprd51 User: pubeu Bind query: yes
4 2 11s749ms 5s848ms 5s900ms 5s874ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 07 14 2 11s749ms 5s874ms [ User: pubeu - Total duration: 11s749ms - Times executed: 2 ]
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_CHEM_GENE_IXNS.CSV') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_CHEM_GENE_IXNS.CSV') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_CHEM_GENE_IXNS.CSV')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_CHEM_GENE_IXNS.CSV')) ii GROUP BY ii.cd;
Date: 2026-02-07 14:37:40 Duration: 5s900ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_CHEM_GENE_IXNS.CSV') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_CHEM_GENE_IXNS.CSV') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_CHEM_GENE_IXNS.CSV')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_CHEM_GENE_IXNS.CSV')) ii GROUP BY ii.cd;
Date: 2026-02-07 14:37:39 Duration: 5s848ms Database: ctdprd51 User: pubeu Bind query: yes
5 1 26m28s 26m28s 26m28s 26m28s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 07 18 1 26m28s 26m28s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:43:56 Duration: 26m28s
6 1 26m14s 26m14s 26m14s 26m14s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 07 19 1 26m14s 26m14s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 19:29:04 Duration: 26m14s
7 1 9m11s 9m11s 9m11s 9m11s select maint_query_logs_archive ();Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 07 00 1 9m11s 9m11s [ User: pubc - Total duration: 9m11s - Times executed: 1 ]
[ Application: psql - Total duration: 9m11s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-02-07 00:09:31 Duration: 9m11s Database: ctdprd51 User: pubc Application: psql
8 1 7m33s 7m33s 7m33s 7m33s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 07 18 1 7m33s 7m33s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 18:56:55 Duration: 7m33s
9 1 7m33s 7m33s 7m33s 7m33s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 07 19 1 7m33s 7m33s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 19:42:02 Duration: 7m33s
10 1 1m50s 1m50s 1m50s 1m50s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 07 19 1 1m50s 1m50s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-02-07 19:45:50 Duration: 1m50s
11 1 1m41s 1m41s 1m41s 1m41s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 07 18 1 1m41s 1m41s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-07 18:47:22 Duration: 1m41s
12 1 1m41s 1m41s 1m41s 1m41s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 07 19 1 1m41s 1m41s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-07 19:32:30 Duration: 1m41s
13 1 1m13s 1m13s 1m13s 1m13s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 07 18 1 1m13s 1m13s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-07 18:15:07 Duration: 1m13s
14 1 1m13s 1m13s 1m13s 1m13s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 07 19 1 1m13s 1m13s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-07 19:00:29 Duration: 1m13s
15 1 1m5s 1m5s 1m5s 1m5s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 07 18 1 1m5s 1m5s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-07 18:16:13 Duration: 1m5s
16 1 1m4s 1m4s 1m4s 1m4s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 07 19 1 1m4s 1m4s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-07 19:01:34 Duration: 1m4s
17 1 55s341ms 55s341ms 55s341ms 55s341ms copy pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 07 19 1 55s341ms 55s341ms -
COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 19:43:23 Duration: 55s341ms
18 1 54s249ms 54s249ms 54s249ms 54s249ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 07 18 1 54s249ms 54s249ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:13:45 Duration: 54s249ms
19 1 53s986ms 53s986ms 53s986ms 53s986ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 07 18 1 53s986ms 53s986ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:59:07 Duration: 53s986ms
20 1 44s871ms 44s871ms 44s871ms 44s871ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 07 18 1 44s871ms 44s871ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-07 18:48:40 Duration: 44s871ms
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 26m28s 26m28s 26m28s 1 26m28s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 07 18 1 26m28s 26m28s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:43:56 Duration: 26m28s
2 26m14s 26m14s 26m14s 1 26m14s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 07 19 1 26m14s 26m14s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 19:29:04 Duration: 26m14s
3 9m11s 9m11s 9m11s 1 9m11s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 07 00 1 9m11s 9m11s [ User: pubc - Total duration: 9m11s - Times executed: 1 ]
[ Application: psql - Total duration: 9m11s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-02-07 00:09:31 Duration: 9m11s Database: ctdprd51 User: pubc Application: psql
4 7m33s 7m33s 7m33s 1 7m33s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 07 18 1 7m33s 7m33s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 18:56:55 Duration: 7m33s
5 7m33s 7m33s 7m33s 1 7m33s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 07 19 1 7m33s 7m33s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 19:42:02 Duration: 7m33s
6 1m50s 1m50s 1m50s 1 1m50s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 07 19 1 1m50s 1m50s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-02-07 19:45:50 Duration: 1m50s
7 1m41s 1m41s 1m41s 1 1m41s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 07 18 1 1m41s 1m41s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-07 18:47:22 Duration: 1m41s
8 1m41s 1m41s 1m41s 1 1m41s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 07 19 1 1m41s 1m41s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-07 19:32:30 Duration: 1m41s
9 1m13s 1m13s 1m13s 1 1m13s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 07 18 1 1m13s 1m13s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-07 18:15:07 Duration: 1m13s
10 1m13s 1m13s 1m13s 1 1m13s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 07 19 1 1m13s 1m13s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-07 19:00:29 Duration: 1m13s
11 1m5s 1m5s 1m5s 1 1m5s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 07 18 1 1m5s 1m5s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-07 18:16:13 Duration: 1m5s
12 1m4s 1m4s 1m4s 1 1m4s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 07 19 1 1m4s 1m4s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-07 19:01:34 Duration: 1m4s
13 55s341ms 55s341ms 55s341ms 1 55s341ms copy pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 07 19 1 55s341ms 55s341ms -
COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-07 19:43:23 Duration: 55s341ms
14 54s249ms 54s249ms 54s249ms 1 54s249ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 07 18 1 54s249ms 54s249ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:13:45 Duration: 54s249ms
15 53s986ms 53s986ms 53s986ms 1 53s986ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 07 18 1 53s986ms 53s986ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-07 18:59:07 Duration: 53s986ms
16 44s871ms 44s871ms 44s871ms 1 44s871ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 07 18 1 44s871ms 44s871ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-07 18:48:40 Duration: 44s871ms
17 44s525ms 44s525ms 44s525ms 1 44s525ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 07 19 1 44s525ms 44s525ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-07 19:33:47 Duration: 44s525ms
18 42s492ms 42s492ms 42s492ms 1 42s492ms copy pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 07 18 1 42s492ms 42s492ms -
COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-07 18:17:28 Duration: 42s492ms
19 42s435ms 42s435ms 42s435ms 1 42s435ms copy pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 07 19 1 42s435ms 42s435ms -
COPY pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-07 19:02:49 Duration: 42s435ms
20 41s71ms 41s71ms 41s71ms 1 41s71ms copy pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 07 19 1 41s71ms 41s71ms -
COPY pub2.gene_go_annot (gene_id, go_term_id, taxon_id, evidence_cd, is_not) TO stdout;
Date: 2026-02-07 19:29:50 Duration: 41s71ms
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
-
Events
Log levels
Key values
- 7,843 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 1 ERROR entries
- 0 WARNING entries
- 0 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 1 Max number of times the same event was reported
- 1 Total events found
Rank Times reported Error 1 1 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #1
Day Hour Count Feb 07 02 1 - ERROR: syntax error at or near ")" at character 4810
Statement: select distinct e.reference_acc_txt as "Reference", pref.abbr_authors_txt as "Author", referenceExp.author_summary as "AuthorSummary", (Select STRING_AGG( distinct eventproject.project_nm, '|')) as "AssociatedStudyTitles", eevent.collection_start_yr as "EnrollmentStartYear", eevent.collection_end_yr as "EnrollmentEndYear", (Select STRING_AGG( distinct studyFactor.nm, '|')) as "StudyFactors", (Select STRING_AGG(distinct stressorSrcType.nm, '|')) as "StressorSourceCategory", stressor.chem_term_nm as "ExposureStressorName", stressor.src_details as "StressorSourceDetails", stressor.sample_qty as "NumberOfStressorSamples", stressor.note as "StressorNotes", ereceptor.qty as "NumberOfReceptors", ereceptor.description as "Receptors", ereceptor.term_nm as "ReceptorDescription", ereceptor.term_acc_txt as "ReceptorID", ereceptor.note as "ReceptorNotes", (Select STRING_AGG(distinct COALESCE( COALESCE(NULLIF(CAST(receptorTobaccoUse.pct as int),0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF(CAST(receptorTobaccoUse.pct as int),0)) || '% ' , tobaccoUse.nm)), '|')) as "SmokingStatus", ereceptor.age || ' ' || age_uom.nm as "Age", age_qualifier.nm as "AgeQualifier", (Select STRING_AGG(distinct COALESCE( COALESCE(NULLIF(CAST(pct as int),0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF(CAST(pct as int),0)) || '% ' , gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id=gender.id where exp_receptor_id = ereceptor.id ) as "Sex", (Select STRING_AGG(distinct COALESCE( COALESCE(NULLIF(CAST(receptorRace.pct as int),0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF(CAST(receptorRace.pct as int),0)) || '% ' , race.nm)), '|')) as "Race", (Select STRING_AGG( distinct eventAssayMethod.nm, '|')) as "Methods" , eevent.detection_limit as "DetectionLimit", eevent.detection_limit_uom as "DetectionLimitUnitsOfMeasurement", eevent.detection_freq as "DetectionFrequency", emedium.nm as "Medium", eevent.exp_marker_term_nm as "ExposureMarker", eevent.exp_marker_lvl as "MarkerLevel", eevent.assay_uom as "MarkerUnitsOfMeasurement", eevent.assay_measurement_stat as "MarkerMeasurementStatistic", eevent.assay_note as "AssayNotes", (Select STRING_AGG( distinct country.nm, '|')) as "StudyCountries", (Select STRING_AGG( distinct eventLocation.geographic_region_nm, '|')) as "StateOrProvince", (Select STRING_AGG( distinct eventLocation.locality_txt, '|')) as "CityTownRegionOrArea", eevent.note as "ExposureEventNotes", eiot.description as "OutcomeRelationship", outcome.disease_term_nm as "DiseaseName", outcome.phenotype_action_degree_type_nm as "PhenotypeActionDegreeType", outcome.phenotype_term_nm as "PhenotypeName", (Select STRING_AGG( distinct expAnatomy.anatomy_term_nm, '|')) as "Anatomy", outcome.note as "ExposureOutcomeNotes" from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where ereceptor.term_acc_txt in (select acc_txt from term where id in )) or eevent.exp_marker_acc_txt in (select acc_txt from term where id in )) group by "Reference", "Author", "AuthorSummary", "EnrollmentStartYear", "EnrollmentEndYear", "ExposureStressorName", "StressorSourceDetails", "NumberOfStressorSamples", "StressorNotes", "NumberOfReceptors", "Receptors", "ReceptorDescription", "ReceptorID", "ReceptorNotes", "Age", "AgeQualifier", "DetectionLimit", "DetectionLimitUnitsOfMeasurement", "DetectionFrequency", "Medium", "ExposureMarker", "MarkerLevel", "MarkerUnitsOfMeasurement", "MarkerMeasurementStatistic", "AssayNotes", "ExposureEventNotes", "OutcomeRelationship", "DiseaseName", "PhenotypeActionDegreeType", "PhenotypeName", "ExposureOutcomeNotes", ereceptor.id, eventLocation.exp_event_id ;
Date: 2026-02-07 02:08:19 Database: ctdprd51 Application: User: pubeu Remote: