pgBadger-
Global information
- Generated on Sun Feb 15 04:15:04 2026
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20260214
- Parsed 12,482 log entries in 3s
- Log start from 2026-02-14 00:00:01 to 2026-02-14 23:59:45
-
Overview
Global Stats
- 58 Number of unique normalized queries
- 60 Number of queries
- 1h44m7s Total query duration
- 2026-02-14 00:09:18 First query
- 2026-02-14 19:45:57 Last query
- 1 queries/s at 2026-02-14 19:32:36 Query peak
- 1h44m7s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 1h44m7s Execute total duration
- 0 Number of events
- 0 Number of unique normalized events
- 0 Max number of times the same event was reported
- 0 Number of cancellation
- 3 Total number of automatic vacuums
- 14 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 1,511 Total number of sessions
- 40 sessions at 2026-02-14 03:16:05 Session peak
- 32d5h59m41s Total duration of sessions
- 30m44s Average duration of sessions
- 0 Average queries per session
- 4s134ms Average queries duration per session
- 30m39s Average idle time per session
- 1,511 Total number of connections
- 9 connections/s at 2026-02-14 05:40:08 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 1 queries/s Query Peak
- 2026-02-14 19:32:36 Date
SELECT Traffic
Key values
- 1 queries/s Query Peak
- 2026-02-14 05:44:02 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2026-02-14 19:32:36 Date
Queries duration
Key values
- 1h44m7s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 14 00 2 0ms 9m16s 4m41s 0ms 0ms 9m23s 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 0 0ms 0ms 0ms 0ms 0ms 0ms 05 4 0ms 7s384ms 7s342ms 0ms 7s364ms 14s684ms 06 0 0ms 0ms 0ms 0ms 0ms 0ms 07 0 0ms 0ms 0ms 0ms 0ms 0ms 08 0 0ms 0ms 0ms 0ms 0ms 0ms 09 0 0ms 0ms 0ms 0ms 0ms 0ms 10 0 0ms 0ms 0ms 0ms 0ms 0ms 11 0 0ms 0ms 0ms 0ms 0ms 0ms 12 0 0ms 0ms 0ms 0ms 0ms 0ms 13 0 0ms 0ms 0ms 0ms 0ms 0ms 14 0 0ms 0ms 0ms 0ms 0ms 0ms 15 0 0ms 0ms 0ms 0ms 0ms 0ms 16 0 0ms 0ms 0ms 0ms 0ms 0ms 17 1 0ms 5s656ms 5s656ms 0ms 0ms 5s656ms 18 32 0ms 26m21s 1m29s 1m12s 2m11s 26m21s 19 21 0ms 26m5s 2m12s 1m21s 2m29s 26m5s 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 0 0ms 0ms 0ms 0ms 0ms 0ms 22 0 0ms 0ms 0ms 0ms 0ms 0ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 14 00 1 0 9m16s 0ms 0ms 9m16s 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 0 0 0ms 0ms 0ms 0ms 05 4 0 7s342ms 0ms 0ms 14s684ms 06 0 0 0ms 0ms 0ms 0ms 07 0 0 0ms 0ms 0ms 0ms 08 0 0 0ms 0ms 0ms 0ms 09 0 0 0ms 0ms 0ms 0ms 10 0 0 0ms 0ms 0ms 0ms 11 0 0 0ms 0ms 0ms 0ms 12 0 0 0ms 0ms 0ms 0ms 13 0 0 0ms 0ms 0ms 0ms 14 0 0 0ms 0ms 0ms 0ms 15 0 0 0ms 0ms 0ms 0ms 16 0 0 0ms 0ms 0ms 0ms 17 1 0 5s656ms 0ms 0ms 5s656ms 18 0 32 1m29s 56s749ms 1m12s 26m21s 19 0 21 2m12s 44s448ms 1m21s 26m5s 20 0 0 0ms 0ms 0ms 0ms 21 0 0 0ms 0ms 0ms 0ms 22 0 0 0ms 0ms 0ms 0ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Feb 14 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Feb 14 00 0 0 0.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 0 0.00 0.00% 05 0 4 4.00 0.00% 06 0 0 0.00 0.00% 07 0 0 0.00 0.00% 08 0 0 0.00 0.00% 09 0 0 0.00 0.00% 10 0 0 0.00 0.00% 11 0 0 0.00 0.00% 12 0 0 0.00 0.00% 13 0 0 0.00 0.00% 14 0 0 0.00 0.00% 15 0 0 0.00 0.00% 16 0 0 0.00 0.00% 17 0 1 1.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 0 0.00 0.00% 22 0 0 0.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Feb 14 00 62 0.02/s 01 65 0.02/s 02 64 0.02/s 03 60 0.02/s 04 64 0.02/s 05 77 0.02/s 06 62 0.02/s 07 71 0.02/s 08 61 0.02/s 09 62 0.02/s 10 63 0.02/s 11 65 0.02/s 12 63 0.02/s 13 54 0.01/s 14 61 0.02/s 15 61 0.02/s 16 63 0.02/s 17 62 0.02/s 18 67 0.02/s 19 61 0.02/s 20 62 0.02/s 21 58 0.02/s 22 61 0.02/s 23 62 0.02/s Day Hour Count Average Duration Average idle time Feb 14 00 62 31m15s 31m6s 01 65 29m57s 29m57s 02 64 30m9s 30m9s 03 60 31m20s 31m20s 04 64 30m33s 30m33s 05 77 25m37s 25m36s 06 62 31m6s 31m6s 07 71 31m11s 31m11s 08 61 31m13s 31m13s 09 62 31m15s 31m15s 10 63 31m8s 31m8s 11 65 29m38s 29m38s 12 63 30m25s 30m25s 13 54 31m50s 31m50s 14 61 31m39s 31m39s 15 61 30m53s 30m53s 16 63 31m12s 31m12s 17 62 31m23s 31m23s 18 66 29m44s 29m 19 62 32m16s 31m31s 20 62 31m14s 31m14s 21 58 31m22s 31m22s 22 61 31m14s 31m14s 23 62 31m25s 31m25s -
Connections
Established Connections
Key values
- 9 connections Connection Peak
- 2026-02-14 05:40:08 Date
Connections per database
Key values
- ctdprd51 Main Database
- 1,511 connections Total
Connections per user
Key values
- qaeu Main User
- 1,511 connections Total
-
Sessions
Simultaneous sessions
Key values
- 40 sessions Session Peak
- 2026-02-14 03:16:05 Date
Histogram of session times
Key values
- 1,462 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 1,511 sessions Total
Sessions per user
Key values
- qaeu Main User
- 1,511 sessions Total
Sessions per host
Key values
- 10.12.5.45 Main Host
- 1,511 sessions Total
-
Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 17,891 buffers Checkpoint Peak
- 2026-02-14 19:42:45 Date
- 1619.108 seconds Highest write time
- 0.002 seconds Sync time
Checkpoints Wal files
Key values
- 1 files Wal files usage Peak
- 2026-02-14 00:16:06 Date
Checkpoints distance
Key values
- 4.48 Mo Distance Peak
- 2026-02-14 00:16:06 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Feb 14 00 315 31.757s 0.003s 31.883s 01 141 14.29s 0.002s 14.32s 02 194 19.608s 0.002s 19.636s 03 282 28.421s 0.002s 28.451s 04 75 7.67s 0.002s 7.7s 05 99 10.011s 0.002s 10.041s 06 135 13.609s 0.001s 13.624s 07 271 27.306s 0.002s 27.335s 08 23 2.475s 0.002s 2.505s 09 35 3.684s 0.002s 3.713s 10 35 3.683s 0.002s 3.713s 11 34 3.589s 0.002s 3.619s 12 43 4.48s 0.002s 4.509s 13 21 2.276s 0.002s 2.305s 14 99 10.077s 0.002s 10.106s 15 14 1.482s 0.001s 1.496s 16 22 2.287s 0.001s 2.302s 17 20 2.161s 0.002s 2.191s 18 0 0s 0s 0s 19 17,909 1,620.996s 0.003s 1,621.026s 20 21 2.267s 0.002s 2.297s 21 22 2.368s 0.002s 2.397s 22 22 2.365s 0.002s 2.395s 23 24 2.564s 0.002s 2.592s Day Hour Added Removed Recycled Synced files Longest sync Average sync Feb 14 00 0 0 1 64 0.001s 0.002s 01 0 0 0 27 0.001s 0.002s 02 0 0 0 30 0.001s 0.002s 03 0 0 0 25 0.001s 0.002s 04 0 0 0 21 0.001s 0.002s 05 0 0 0 23 0.001s 0.002s 06 0 0 0 16 0.001s 0.001s 07 0 0 0 28 0.001s 0.002s 08 0 0 0 16 0.001s 0.002s 09 0 0 0 17 0.001s 0.002s 10 0 0 0 14 0.001s 0.002s 11 0 0 0 17 0.001s 0.002s 12 0 0 0 18 0.001s 0.002s 13 0 0 0 14 0.001s 0.002s 14 0 0 0 25 0.001s 0.002s 15 0 0 0 8 0.001s 0.001s 16 0 0 0 9 0.001s 0.001s 17 0 0 0 16 0.001s 0.002s 18 0 0 0 0 0s 0s 19 0 0 0 18 0.001s 0.002s 20 0 0 0 14 0.001s 0.002s 21 0 0 0 15 0.001s 0.002s 22 0 0 0 16 0.001s 0.002s 23 0 0 0 13 0.001s 0.002s Day Hour Count Avg time (sec) Feb 14 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Feb 14 00 1,167.50 kB 2,987.00 kB 01 410.00 kB 2,479.00 kB 02 416.00 kB 2,086.50 kB 03 590.00 kB 1,820.50 kB 04 162.00 kB 1,496.50 kB 05 256.00 kB 1,250.50 kB 06 703.00 kB 1,160.00 kB 07 772.00 kB 1,433.50 kB 08 43.00 kB 1,168.50 kB 09 60.50 kB 957.00 kB 10 78.50 kB 789.00 kB 11 61.00 kB 652.50 kB 12 62.00 kB 539.00 kB 13 29.00 kB 444.00 kB 14 223.00 kB 401.00 kB 15 47.00 kB 349.00 kB 16 53.00 kB 320.00 kB 17 19.50 kB 276.00 kB 18 0.00 kB 0.00 kB 19 40.00 kB 230.50 kB 20 40.50 kB 194.50 kB 21 44.00 kB 165.50 kB 22 33.00 kB 140.50 kB 23 58.00 kB 124.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Feb 14 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 0.04 sec Highest CPU-cost vacuum
Table pg_catalog.pg_statistic
Database ctdprd51 - 2026-02-14 02:49:41 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 0.04 sec Highest CPU-cost vacuum
Table pg_catalog.pg_statistic
Database ctdprd51 - 2026-02-14 02:49:41 Date
Analyzes per table
Key values
- pubc.log_query (14) Main table analyzed (database ctdprd51)
- 14 analyzes Total
Vacuums per table
Key values
- pubc.log_query (2) Main table vacuumed on database ctdprd51
- 3 vacuums Total
Tuples removed per table
Key values
- pg_catalog.pg_statistic (600) Main table with removed tuples on database ctdprd51
- 609 tuples Total removed
Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Feb 14 00 1 1 01 0 5 02 1 3 03 0 1 04 0 1 05 1 2 06 0 0 07 0 0 08 0 0 09 0 0 10 0 0 11 0 0 12 0 0 13 0 0 14 0 1 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 21 0 0 22 0 0 23 0 0 - 0.04 sec Highest CPU-cost vacuum
-
Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
-
Queries
Queries by type
Key values
- 6 Total read queries
- 53 Total write queries
Queries by database
Key values
- unknown Main database
- 55 Requests
- 1h34m12s (unknown)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 108 Requests
User Request type Count Duration load Total 7 1m7s select 7 1m7s postgres Total 9 8m57s copy to 9 8m57s pubc Total 1 9m16s select 1 9m16s pubeu Total 21 3m39s select 21 3m39s qaeu Total 2 14s555ms select 2 14s555ms unknown Total 108 1h49m24s copy to 80 1h39m45s others 1 6s733ms select 27 9m32s Duration by user
Key values
- 1h49m24s (unknown) Main time consuming user
User Request type Count Duration load Total 7 1m7s select 7 1m7s postgres Total 9 8m57s copy to 9 8m57s pubc Total 1 9m16s select 1 9m16s pubeu Total 21 3m39s select 21 3m39s qaeu Total 2 14s555ms select 2 14s555ms unknown Total 108 1h49m24s copy to 80 1h39m45s others 1 6s733ms select 27 9m32s Queries by host
Key values
- unknown Main host
- 148 Requests
- 2h12m39s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 58 Requests
- 1h34m33s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2026-02-14 02:15:38 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 44 > 10000ms duration
Slowest individual queries
Rank Duration Query 1 26m21s COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-14 18:43:46 ]
2 26m5s COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-14 19:28:41 ]
3 9m16s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2026-02-14 00:09:18 - Database: ctdprd51 - User: pubc - Application: psql ]
4 7m27s COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-02-14 18:56:39 ]
5 7m27s COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-02-14 19:41:32 ]
6 1m50s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-02-14 19:45:18 ]
7 1m41s COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2026-02-14 18:47:12 ]
8 1m40s COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;[ Date: 2026-02-14 19:32:06 ]
9 1m12s COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;[ Date: 2026-02-14 18:15:05 ]
10 1m12s COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;[ Date: 2026-02-14 19:00:17 ]
11 1m4s COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;[ Date: 2026-02-14 18:16:10 ]
12 1m3s COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;[ Date: 2026-02-14 19:01:22 ]
13 54s564ms COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;[ Date: 2026-02-14 19:42:52 ]
14 54s82ms COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-14 18:13:44 ]
15 53s487ms COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;[ Date: 2026-02-14 18:58:56 ]
16 44s909ms COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;[ Date: 2026-02-14 18:48:30 ]
17 44s448ms COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;[ Date: 2026-02-14 19:33:23 ]
18 42s161ms COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;[ Date: 2026-02-14 18:17:25 ]
19 42s35ms COPY pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;[ Date: 2026-02-14 19:02:36 ]
20 41s42ms COPY pub2.term_enrichment (term_id, enriched_term_id, object_type_id, enriched_object_type_id, raw_p_val, corrected_p_val, target_match_qty, target_mismatch_qty, target_total_qty, control_match_qty, control_mismatch_qty, control_total_qty, background_match_qty, background_mismatch_qty, background_total_qty) TO stdout;[ Date: 2026-02-14 19:34:05 ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 26m21s 1 26m21s 26m21s 26m21s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 14 18 1 26m21s 26m21s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:43:46 Duration: 26m21s
2 26m5s 1 26m5s 26m5s 26m5s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 14 19 1 26m5s 26m5s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 19:28:41 Duration: 26m5s
3 9m16s 1 9m16s 9m16s 9m16s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 14 00 1 9m16s 9m16s [ User: pubc - Total duration: 9m16s - Times executed: 1 ]
[ Application: psql - Total duration: 9m16s - Times executed: 1 ]
-
/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-02-14 00:09:18 Duration: 9m16s Database: ctdprd51 User: pubc Application: psql
4 7m27s 1 7m27s 7m27s 7m27s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 14 18 1 7m27s 7m27s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 18:56:39 Duration: 7m27s
5 7m27s 1 7m27s 7m27s 7m27s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 14 19 1 7m27s 7m27s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 19:41:32 Duration: 7m27s
6 1m50s 1 1m50s 1m50s 1m50s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 14 19 1 1m50s 1m50s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-02-14 19:45:18 Duration: 1m50s
7 1m41s 1 1m41s 1m41s 1m41s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 14 18 1 1m41s 1m41s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-14 18:47:12 Duration: 1m41s
8 1m40s 1 1m40s 1m40s 1m40s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 14 19 1 1m40s 1m40s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-14 19:32:06 Duration: 1m40s
9 1m12s 1 1m12s 1m12s 1m12s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 14 18 1 1m12s 1m12s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-14 18:15:05 Duration: 1m12s
10 1m12s 1 1m12s 1m12s 1m12s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 14 19 1 1m12s 1m12s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-14 19:00:17 Duration: 1m12s
11 1m4s 1 1m4s 1m4s 1m4s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 14 18 1 1m4s 1m4s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-14 18:16:10 Duration: 1m4s
12 1m3s 1 1m3s 1m3s 1m3s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 14 19 1 1m3s 1m3s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-14 19:01:22 Duration: 1m3s
13 54s564ms 1 54s564ms 54s564ms 54s564ms copy pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 14 19 1 54s564ms 54s564ms -
COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 19:42:52 Duration: 54s564ms
14 54s82ms 1 54s82ms 54s82ms 54s82ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 14 18 1 54s82ms 54s82ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:13:44 Duration: 54s82ms
15 53s487ms 1 53s487ms 53s487ms 53s487ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 14 18 1 53s487ms 53s487ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:58:56 Duration: 53s487ms
16 44s909ms 1 44s909ms 44s909ms 44s909ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 14 18 1 44s909ms 44s909ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-14 18:48:30 Duration: 44s909ms
17 44s448ms 1 44s448ms 44s448ms 44s448ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 14 19 1 44s448ms 44s448ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-14 19:33:23 Duration: 44s448ms
18 42s161ms 1 42s161ms 42s161ms 42s161ms copy pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 14 18 1 42s161ms 42s161ms -
COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-14 18:17:25 Duration: 42s161ms
19 42s35ms 1 42s35ms 42s35ms 42s35ms copy pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 14 19 1 42s35ms 42s35ms -
COPY pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-14 19:02:36 Duration: 42s35ms
20 41s42ms 1 41s42ms 41s42ms 41s42ms copy pub2.term_enrichment (term_id, enriched_term_id, object_type_id, enriched_object_type_id, raw_p_val, corrected_p_val, target_match_qty, target_mismatch_qty, target_total_qty, control_match_qty, control_mismatch_qty, control_total_qty, background_match_qty, background_mismatch_qty, background_total_qty) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 14 19 1 41s42ms 41s42ms -
COPY pub2.term_enrichment (term_id, enriched_term_id, object_type_id, enriched_object_type_id, raw_p_val, corrected_p_val, target_match_qty, target_mismatch_qty, target_total_qty, control_match_qty, control_mismatch_qty, control_total_qty, background_match_qty, background_mismatch_qty, background_total_qty) TO stdout;
Date: 2026-02-14 19:34:05 Duration: 41s42ms
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 2 14s748ms 7s364ms 7s384ms 7s374ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 14 05 2 14s748ms 7s374ms [ User: pubeu - Total duration: 7s384ms - Times executed: 1 ]
[ User: qaeu - Total duration: 7s364ms - Times executed: 1 ]
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-14 05:49:00 Duration: 7s384ms Database: ctdprd51 User: pubeu Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-14 05:43:55 Duration: 7s364ms Database: ctdprd51 User: qaeu Bind query: yes
2 2 14s621ms 7s300ms 7s320ms 7s310ms select distinct associatedterm.nm || ? || o.cd || ? || associatedterm.nm_html || ? || associatedterm.acc_txt || ? || associatedterm.acc_db_cd as associatedterm, associatedterm.id associatedtermid, ptr.ixn_id ixnid, associatedterm.object_type_id || ? || associatedterm.nm_sort associatedtermnmsort, coalesce(associatedterm.secondary_nm, ?) casrn, phenotypeterm.nm || ? || ? || ? || phenotypeterm.nm_html || ? || phenotypeterm.acc_txt || ? || phenotypeterm.acc_db_cd as phenotype, phenotypeterm.id phenotypeid, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct anatomyterm.nm_html || ? || anatomyterm.acc_txt || ? || ia.level_seq || ? || anatomyterm.acc_db_cd || ? || anatomyterm.nm, ?)) as anatomyterms, count(distinct taxonterm.nm) taxoncount, i.ixn_prose_html ixnprosehtml, i.ixn_prose_txt ixnprose, i.sort_txt ixnsort, ( select string_agg(distinct r.acc_txt, ?)) as references, count(distinct ptr.reference_id) refcount, pt.indirect_term_qty inferredcount, count(*) over () fullrowcount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedterm on ptr.term_id = associatedterm.id inner join term phenotypeterm on ptr.phenotype_id = phenotypeterm.id left outer join term taxonterm on ptr.taxon_id = taxonterm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedterm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyterm on ia.anatomy_id = anatomyterm.id where ptr.term_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?)) and ptr.term_object_type_id = ? and ptr.phenotype_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and upper(baseterm.nm) like ?))) and taxonterm.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id in ( select distinct id from term baseterm where object_type_id = ? and baseterm.id in ( select object_id from db_link l where l.acc_txt = ? and l.type_cd = ? and l.object_type_id = ?))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = ? and action_degree_type_nm in (...)) group by associatedterm, associatedtermnmsort, phenotype, casrn, ixnid, ixnprosehtml, ixnprose, ixnsort, associatedtermid, phenotypeid, inferredcount order by associatedtermnmsort asc, pt.indirect_term_qty desc limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 14 05 2 14s621ms 7s310ms -
select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-14 05:44:02 Duration: 7s320ms Bind query: yes
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select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ACETYLCYSTEINE')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006979' AND l.type_cd = 'A' AND l.object_type_id = 5))) and i.id in ( select ixn_id from ixn_anatomy where anatomy_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 10 and upper(baseTerm.nm) LIKE 'CARDIOVASCULAR SYSTEM'))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9605' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;
Date: 2026-02-14 05:49:08 Duration: 7s300ms Bind query: yes
3 1 26m21s 26m21s 26m21s 26m21s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 14 18 1 26m21s 26m21s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:43:46 Duration: 26m21s
4 1 26m5s 26m5s 26m5s 26m5s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 14 19 1 26m5s 26m5s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 19:28:41 Duration: 26m5s
5 1 9m16s 9m16s 9m16s 9m16s select maint_query_logs_archive ();Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 14 00 1 9m16s 9m16s [ User: pubc - Total duration: 9m16s - Times executed: 1 ]
[ Application: psql - Total duration: 9m16s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-02-14 00:09:18 Duration: 9m16s Database: ctdprd51 User: pubc Application: psql
6 1 7m27s 7m27s 7m27s 7m27s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 14 18 1 7m27s 7m27s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 18:56:39 Duration: 7m27s
7 1 7m27s 7m27s 7m27s 7m27s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 14 19 1 7m27s 7m27s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 19:41:32 Duration: 7m27s
8 1 1m50s 1m50s 1m50s 1m50s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 14 19 1 1m50s 1m50s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-02-14 19:45:18 Duration: 1m50s
9 1 1m41s 1m41s 1m41s 1m41s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 14 18 1 1m41s 1m41s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-14 18:47:12 Duration: 1m41s
10 1 1m40s 1m40s 1m40s 1m40s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 14 19 1 1m40s 1m40s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-14 19:32:06 Duration: 1m40s
11 1 1m12s 1m12s 1m12s 1m12s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 14 18 1 1m12s 1m12s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-14 18:15:05 Duration: 1m12s
12 1 1m12s 1m12s 1m12s 1m12s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 14 19 1 1m12s 1m12s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-14 19:00:17 Duration: 1m12s
13 1 1m4s 1m4s 1m4s 1m4s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 14 18 1 1m4s 1m4s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-14 18:16:10 Duration: 1m4s
14 1 1m3s 1m3s 1m3s 1m3s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 14 19 1 1m3s 1m3s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-14 19:01:22 Duration: 1m3s
15 1 54s564ms 54s564ms 54s564ms 54s564ms copy pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 14 19 1 54s564ms 54s564ms -
COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 19:42:52 Duration: 54s564ms
16 1 54s82ms 54s82ms 54s82ms 54s82ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 14 18 1 54s82ms 54s82ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:13:44 Duration: 54s82ms
17 1 53s487ms 53s487ms 53s487ms 53s487ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 14 18 1 53s487ms 53s487ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:58:56 Duration: 53s487ms
18 1 44s909ms 44s909ms 44s909ms 44s909ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 14 18 1 44s909ms 44s909ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-14 18:48:30 Duration: 44s909ms
19 1 44s448ms 44s448ms 44s448ms 44s448ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 14 19 1 44s448ms 44s448ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-14 19:33:23 Duration: 44s448ms
20 1 42s161ms 42s161ms 42s161ms 42s161ms copy pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 14 18 1 42s161ms 42s161ms -
COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-14 18:17:25 Duration: 42s161ms
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 26m21s 26m21s 26m21s 1 26m21s copy pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Feb 14 18 1 26m21s 26m21s -
COPY pub1.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:43:46 Duration: 26m21s
2 26m5s 26m5s 26m5s 1 26m5s copy pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Feb 14 19 1 26m5s 26m5s -
COPY pub2.gene_disease_reference (id, gene_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_chem_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 19:28:41 Duration: 26m5s
3 9m16s 9m16s 9m16s 1 9m16s select maint_query_logs_archive ();Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Feb 14 00 1 9m16s 9m16s [ User: pubc - Total duration: 9m16s - Times executed: 1 ]
[ Application: psql - Total duration: 9m16s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-02-14 00:09:18 Duration: 9m16s Database: ctdprd51 User: pubc Application: psql
4 7m27s 7m27s 7m27s 1 7m27s copy pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Feb 14 18 1 7m27s 7m27s -
COPY pub1.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 18:56:39 Duration: 7m27s
5 7m27s 7m27s 7m27s 1 7m27s copy pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Feb 14 19 1 7m27s 7m27s -
COPY pub2.term_enrichment_agent (term_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 19:41:32 Duration: 7m27s
6 1m50s 1m50s 1m50s 1 1m50s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Feb 14 19 1 1m50s 1m50s -
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-02-14 19:45:18 Duration: 1m50s
7 1m41s 1m41s 1m41s 1 1m41s copy pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Feb 14 18 1 1m41s 1m41s -
COPY pub1.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-14 18:47:12 Duration: 1m41s
8 1m40s 1m40s 1m40s 1 1m40s copy pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Feb 14 19 1 1m40s 1m40s -
COPY pub2.phenotype_term_reference (id, phenotype_id, term_id, term_object_type_id, reference_id, taxon_id, ixn_id, evidence_cd, source_cd, source_acc_txt, source_acc_db_id, term_reference_id, via_term_id, via_term_object_type_id, network_score, mod_tm) TO stdout;
Date: 2026-02-14 19:32:06 Duration: 1m40s
9 1m12s 1m12s 1m12s 1 1m12s copy pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Feb 14 18 1 1m12s 1m12s -
COPY pub1.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-14 18:15:05 Duration: 1m12s
10 1m12s 1m12s 1m12s 1 1m12s copy pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Feb 14 19 1 1m12s 1m12s -
COPY pub2.dag_path (id, ancestor_dag_node_id, descendant_dag_node_id, ancestor_object_id, descendant_object_id, path_length, enumeration_txt) TO stdout;
Date: 2026-02-14 19:00:17 Duration: 1m12s
11 1m4s 1m4s 1m4s 1 1m4s copy pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Feb 14 18 1 1m4s 1m4s -
COPY pub1.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-14 18:16:10 Duration: 1m4s
12 1m3s 1m3s 1m3s 1 1m3s copy pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Feb 14 19 1 1m3s 1m3s -
COPY pub2.dag_path_step (dag_path_id, step_no, dag_node_id, dag_edge_type_id) TO stdout;
Date: 2026-02-14 19:01:22 Duration: 1m3s
13 54s564ms 54s564ms 54s564ms 1 54s564ms copy pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Feb 14 19 1 54s564ms 54s564ms -
COPY pub2.term_set_enrichment_agent (term_ids_digest, enriched_object_type_id, enriched_term_id, agent_term_id) TO stdout;
Date: 2026-02-14 19:42:52 Duration: 54s564ms
14 54s82ms 54s82ms 54s82ms 1 54s82ms copy pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Feb 14 18 1 54s82ms 54s82ms -
COPY pub1.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:13:44 Duration: 54s82ms
15 53s487ms 53s487ms 53s487ms 1 53s487ms copy pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Feb 14 18 1 53s487ms 53s487ms -
COPY pub2.chem_disease_reference (id, chem_id, disease_id, reference_id, source_acc_txt, source_acc_db_id, via_gene_id, ixn_id, network_score, source_cd, mod_tm) TO stdout;
Date: 2026-02-14 18:58:56 Duration: 53s487ms
16 44s909ms 44s909ms 44s909ms 1 44s909ms copy pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Feb 14 18 1 44s909ms 44s909ms -
COPY pub1.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-14 18:48:30 Duration: 44s909ms
17 44s448ms 44s448ms 44s448ms 1 44s448ms copy pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Feb 14 19 1 44s448ms 44s448ms -
COPY pub2.term (id, object_type_id, acc_txt, acc_db_cd, nm, nm_sort, nm_html, secondary_nm, description, note, is_leaf, new_ixn_qty, ixn_qty, has_chems, has_diseases, has_genes, has_go, has_ixns, has_marrays, has_pathways, has_comps, has_references, has_exposures, has_phenotypes, curated_edge_qty, gene_edge_qty, nm_fts) TO stdout;
Date: 2026-02-14 19:33:23 Duration: 44s448ms
18 42s161ms 42s161ms 42s161ms 1 42s161ms copy pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Feb 14 18 1 42s161ms 42s161ms -
COPY pub1.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-14 18:17:25 Duration: 42s161ms
19 42s35ms 42s35ms 42s35ms 1 42s35ms copy pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) to stdout;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Feb 14 19 1 42s35ms 42s35ms -
COPY pub2.gene_disease (gene_id, disease_id, reference_qty, curated_reference_qty, indirect_chem_qty, exposure_reference_qty, network_score) TO stdout;
Date: 2026-02-14 19:02:36 Duration: 42s35ms
20 41s42ms 41s42ms 41s42ms 1 41s42ms copy pub2.term_enrichment (term_id, enriched_term_id, object_type_id, enriched_object_type_id, raw_p_val, corrected_p_val, target_match_qty, target_mismatch_qty, target_total_qty, control_match_qty, control_mismatch_qty, control_total_qty, background_match_qty, background_mismatch_qty, background_total_qty) to stdout;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Feb 14 19 1 41s42ms 41s42ms -
COPY pub2.term_enrichment (term_id, enriched_term_id, object_type_id, enriched_object_type_id, raw_p_val, corrected_p_val, target_match_qty, target_mismatch_qty, target_total_qty, control_match_qty, control_mismatch_qty, control_total_qty, background_match_qty, background_mismatch_qty, background_total_qty) TO stdout;
Date: 2026-02-14 19:34:05 Duration: 41s42ms
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 6,211 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 0 ERROR entries
- 0 WARNING entries
- 0 EVENTLOG entries
Events per 5 minutes
NO DATASET
Most Frequent Errors/Events
Key values
- 0 Max number of times the same event was reported
- 0 Total events found
Rank Times reported Error NO DATASET