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Global information
- Generated on Wed Jun 3 04:15:03 2026
- Log file: /project/archive/log/postgres/dbprd51/postgresql.log-20260602
- Parsed 17,293 log entries in 2s
- Log start from 2026-06-02 00:00:01 to 2026-06-02 23:58:13
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Overview
Global Stats
- 21 Number of unique normalized queries
- 86 Number of queries
- 35m45s Total query duration
- 2026-06-02 00:05:29 First query
- 2026-06-02 22:18:25 Last query
- 2 queries/s at 2026-06-02 10:03:34 Query peak
- 35m45s Total query duration
- 0ms Prepare/parse total duration
- 0ms Bind total duration
- 35m45s Execute total duration
- 8 Number of events
- 4 Number of unique normalized events
- 4 Max number of times the same event was reported
- 0 Number of cancellation
- 14 Total number of automatic vacuums
- 35 Total number of automatic analyzes
- 0 Number temporary file
- 0 Max size of temporary file
- 0.00 B Average size of temporary file
- 2,083 Total number of sessions
- 61 sessions at 2026-06-02 01:58:59 Session peak
- 40d9h34m7s Total duration of sessions
- 27m55s Average duration of sessions
- 0 Average queries per session
- 1s30ms Average queries duration per session
- 27m54s Average idle time per session
- 2,083 Total number of connections
- 19 connections/s at 2026-06-02 05:25:37 Connection peak
- 2 Total number of databases
SQL Traffic
Key values
- 2 queries/s Query Peak
- 2026-06-02 10:03:34 Date
SELECT Traffic
Key values
- 2 queries/s Query Peak
- 2026-06-02 10:03:34 Date
INSERT/UPDATE/DELETE Traffic
Key values
- 1 queries/s Query Peak
- 2026-06-02 10:00:38 Date
Queries duration
Key values
- 35m45s Total query duration
Prepared queries ratio
Key values
- 0.00 Ratio of bind vs prepare
- 0.00 % Ratio between prepared and "usual" statements
General Activity
↑ Back to the top of the General Activity tableDay Hour Count Min duration Max duration Avg duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 02 00 3 0ms 9m19s 3m11s 0ms 8s247ms 9m26s 01 0 0ms 0ms 0ms 0ms 0ms 0ms 02 0 0ms 0ms 0ms 0ms 0ms 0ms 03 0 0ms 0ms 0ms 0ms 0ms 0ms 04 1 0ms 6s270ms 6s270ms 0ms 0ms 6s270ms 05 2 0ms 5s744ms 5s688ms 0ms 5s633ms 5s744ms 06 10 0ms 1m52s 23s602ms 21s35ms 48s137ms 1m52s 07 2 0ms 14s52ms 10s171ms 0ms 6s289ms 14s52ms 08 5 0ms 20s917ms 16s587ms 13s556ms 20s264ms 20s917ms 09 7 0ms 21s234ms 13s994ms 13s268ms 19s722ms 21s234ms 10 16 0ms 1m51s 17s924ms 20s969ms 39s416ms 1m51s 11 5 0ms 5s893ms 5s556ms 0ms 5s893ms 21s891ms 12 3 0ms 13s943ms 13s372ms 0ms 13s242ms 13s943ms 13 2 0ms 13s175ms 13s118ms 0ms 13s62ms 13s175ms 14 13 0ms 3m16s 35s192ms 21s33ms 47s713ms 3m16s 15 1 0ms 13s781ms 13s781ms 0ms 0ms 13s781ms 16 5 0ms 6s142ms 5s594ms 5s157ms 6s142ms 11s37ms 17 0 0ms 0ms 0ms 0ms 0ms 0ms 18 9 0ms 1m52s 24s416ms 20s835ms 47s503ms 1m52s 19 0 0ms 0ms 0ms 0ms 0ms 0ms 20 0 0ms 0ms 0ms 0ms 0ms 0ms 21 1 0ms 10s776ms 10s776ms 0ms 0ms 10s776ms 22 1 0ms 5s35ms 5s35ms 0ms 0ms 5s35ms 23 0 0ms 0ms 0ms 0ms 0ms 0ms Day Hour SELECT COPY TO Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 02 00 2 0 4m43s 0ms 0ms 9m19s 01 0 0 0ms 0ms 0ms 0ms 02 0 0 0ms 0ms 0ms 0ms 03 0 0 0ms 0ms 0ms 0ms 04 1 0 6s270ms 0ms 0ms 6s270ms 05 2 0 5s688ms 0ms 0ms 5s744ms 06 1 9 23s602ms 0ms 21s35ms 1m52s 07 2 0 10s171ms 0ms 0ms 14s52ms 08 5 0 16s587ms 0ms 13s556ms 20s917ms 09 7 0 13s994ms 0ms 13s268ms 21s234ms 10 7 9 17s924ms 0ms 20s969ms 1m51s 11 5 0 5s556ms 0ms 0ms 21s891ms 12 3 0 13s372ms 0ms 0ms 13s943ms 13 2 0 13s118ms 0ms 0ms 13s175ms 14 4 9 35s192ms 0ms 21s33ms 3m16s 15 1 0 13s781ms 0ms 0ms 13s781ms 16 5 0 5s594ms 0ms 5s157ms 11s37ms 17 0 0 0ms 0ms 0ms 0ms 18 0 9 24s416ms 0ms 20s835ms 1m52s 19 0 0 0ms 0ms 0ms 0ms 20 0 0 0ms 0ms 0ms 0ms 21 1 0 10s776ms 0ms 0ms 10s776ms 22 1 0 5s35ms 0ms 0ms 5s35ms 23 0 0 0ms 0ms 0ms 0ms Day Hour INSERT UPDATE DELETE COPY FROM Average Duration Latency Percentile(90) Latency Percentile(95) Latency Percentile(99) Jun 02 00 0 0 0 0 0ms 0ms 0ms 0ms 01 0 0 0 0 0ms 0ms 0ms 0ms 02 0 0 0 0 0ms 0ms 0ms 0ms 03 0 0 0 0 0ms 0ms 0ms 0ms 04 0 0 0 0 0ms 0ms 0ms 0ms 05 0 0 0 0 0ms 0ms 0ms 0ms 06 0 0 0 0 0ms 0ms 0ms 0ms 07 0 0 0 0 0ms 0ms 0ms 0ms 08 0 0 0 0 0ms 0ms 0ms 0ms 09 0 0 0 0 0ms 0ms 0ms 0ms 10 0 0 0 0 0ms 0ms 0ms 0ms 11 0 0 0 0 0ms 0ms 0ms 0ms 12 0 0 0 0 0ms 0ms 0ms 0ms 13 0 0 0 0 0ms 0ms 0ms 0ms 14 0 0 0 0 0ms 0ms 0ms 0ms 15 0 0 0 0 0ms 0ms 0ms 0ms 16 0 0 0 0 0ms 0ms 0ms 0ms 17 0 0 0 0 0ms 0ms 0ms 0ms 18 0 0 0 0 0ms 0ms 0ms 0ms 19 0 0 0 0 0ms 0ms 0ms 0ms 20 0 0 0 0 0ms 0ms 0ms 0ms 21 0 0 0 0 0ms 0ms 0ms 0ms 22 0 0 0 0 0ms 0ms 0ms 0ms 23 0 0 0 0 0ms 0ms 0ms 0ms Day Hour Prepare Bind Bind/Prepare Percentage of prepare Jun 02 00 0 1 1.00 0.00% 01 0 0 0.00 0.00% 02 0 0 0.00 0.00% 03 0 0 0.00 0.00% 04 0 1 1.00 0.00% 05 0 2 2.00 0.00% 06 0 1 1.00 0.00% 07 0 2 2.00 0.00% 08 0 5 5.00 0.00% 09 0 7 7.00 0.00% 10 0 7 7.00 0.00% 11 0 5 5.00 0.00% 12 0 3 3.00 0.00% 13 0 2 2.00 0.00% 14 0 4 4.00 0.00% 15 0 1 1.00 0.00% 16 0 5 5.00 0.00% 17 0 0 0.00 0.00% 18 0 0 0.00 0.00% 19 0 0 0.00 0.00% 20 0 0 0.00 0.00% 21 0 1 1.00 0.00% 22 0 1 1.00 0.00% 23 0 0 0.00 0.00% Day Hour Count Average / Second Jun 02 00 78 0.02/s 01 78 0.02/s 02 72 0.02/s 03 103 0.03/s 04 79 0.02/s 05 168 0.05/s 06 81 0.02/s 07 78 0.02/s 08 81 0.02/s 09 102 0.03/s 10 147 0.04/s 11 74 0.02/s 12 79 0.02/s 13 78 0.02/s 14 81 0.02/s 15 76 0.02/s 16 78 0.02/s 17 79 0.02/s 18 80 0.02/s 19 78 0.02/s 20 76 0.02/s 21 76 0.02/s 22 81 0.02/s 23 80 0.02/s Day Hour Count Average Duration Average idle time Jun 02 00 78 31m58s 31m51s 01 78 30m55s 30m55s 02 72 32m14s 32m14s 03 103 23m52s 23m52s 04 79 29m36s 29m36s 05 168 15m7s 15m7s 06 81 29m23s 29m20s 07 78 30m43s 30m42s 08 81 29m49s 29m48s 09 102 24m5s 24m4s 10 146 14m54s 14m52s 11 74 30m36s 30m36s 12 79 31m40s 31m40s 13 78 31m18s 31m18s 14 81 30m6s 30m1s 15 76 31m17s 31m17s 16 78 30m50s 30m50s 17 79 30m55s 30m55s 18 80 29m56s 29m53s 19 79 37m50s 37m50s 20 76 31m 31m 21 76 29m51s 29m51s 22 81 29m46s 29m46s 23 80 31m2s 31m2s -
Connections
Established Connections
Key values
- 19 connections Connection Peak
- 2026-06-02 05:25:37 Date
Connections per database
Key values
- ctdprd51 Main Database
- 2,083 connections Total
Connections per user
Key values
- pubeu Main User
- 2,083 connections Total
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Sessions
Simultaneous sessions
Key values
- 61 sessions Session Peak
- 2026-06-02 01:58:59 Date
Histogram of session times
Key values
- 1,757 1800000-3600000ms duration
Sessions per database
Key values
- ctdprd51 Main Database
- 2,083 sessions Total
Sessions per user
Key values
- pubeu Main User
- 2,083 sessions Total
Sessions per host
Key values
- 10.12.5.53 Main Host
- 2,083 sessions Total
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Checkpoints / Restartpoints
Checkpoints Buffers
Key values
- 56,934 buffers Checkpoint Peak
- 2026-06-02 03:18:33 Date
- 1619.987 seconds Highest write time
- 0.003 seconds Sync time
Checkpoints Wal files
Key values
- 0 files Wal files usage Peak
- 2026-06-02 09:23:43 Date
Checkpoints distance
Key values
- 1,192.58 Mo Distance Peak
- 2026-06-02 03:18:33 Date
Checkpoints Activity
↑ Back to the top of the Checkpoint Activity tableDay Hour Written buffers Write time Sync time Total time Jun 02 00 1,147 115.072s 0.002s 115.083s 01 6,324 633.358s 0.004s 633.409s 02 1,058 106.039s 0.001s 106.043s 03 105,390 3,278.996s 0.004s 3,279.232s 04 161 16.324s 0.002s 16.333s 05 4,472 448.008s 0.002s 448.128s 06 45,644 1,689.376s 0.002s 1,689.433s 07 1,248 125.095s 0.002s 125.1s 08 50,033 1,732.229s 0.003s 1,732.366s 09 1,342 134.508s 0.002s 134.563s 10 5,204 521.141s 0.001s 521.205s 11 7,256 726.701s 0.003s 726.715s 12 6,196 620.446s 0.002s 620.506s 13 1,004 100.728s 0.003s 100.782s 14 1,461 146.488s 0.002s 146.496s 15 1,086 108.962s 0.002s 109.018s 16 181 18.308s 0.002s 18.316s 17 29 3.079s 0.002s 3.089s 18 2,512 251.514s 0.003s 251.569s 19 124 12.585s 0.002s 12.594s 20 53 5.4s 0.001s 5.405s 21 3,737 374.334s 0.003s 374.398s 22 4,071 407.825s 0.001s 407.877s 23 14,414 1,442.577s 0.003s 1,442.645s Day Hour Added Removed Recycled Synced files Longest sync Average sync Jun 02 00 0 0 0 81 0.001s 0.002s 01 0 2 0 73 0.001s 0.002s 02 0 0 0 26 0.001s 0.001s 03 0 69 0 93 0.001s 0.003s 04 0 0 0 31 0.001s 0.002s 05 0 28 0 82 0.001s 0.002s 06 0 4 0 147 0.001s 0.002s 07 0 0 0 67 0.001s 0.001s 08 0 32 0 137 0.001s 0.002s 09 0 1 0 82 0.001s 0.002s 10 0 7 0 24 0.001s 0.001s 11 0 0 0 145 0.001s 0.003s 12 0 4 0 76 0.001s 0.002s 13 0 1 0 67 0.001s 0.002s 14 0 0 0 63 0.001s 0.002s 15 0 1 0 107 0.001s 0.002s 16 0 0 0 60 0.001s 0.002s 17 0 0 0 15 0.001s 0.002s 18 0 1 0 65 0.001s 0.002s 19 0 0 0 27 0.001s 0.002s 20 0 0 0 45 0.001s 0.001s 21 0 3 0 35 0.001s 0.002s 22 0 2 0 35 0.001s 0.001s 23 0 4 0 56 0.001s 0.003s Day Hour Count Avg time (sec) Jun 02 00 0 0s 01 0 0s 02 0 0s 03 0 0s 04 0 0s 05 0 0s 06 0 0s 07 0 0s 08 0 0s 09 0 0s 10 0 0s 11 0 0s 12 0 0s 13 0 0s 14 0 0s 15 0 0s 16 0 0s 17 0 0s 18 0 0s 19 0 0s 20 0 0s 21 0 0s 22 0 0s 23 0 0s Day Hour Mean distance Mean estimate Jun 02 00 2,553.00 kB 18,918.50 kB 01 16,839.00 kB 28,966.50 kB 02 4,892.00 kB 25,346.00 kB 03 374,161.67 kB 583,984.67 kB 04 328.00 kB 462,312.50 kB 05 23,377.00 kB 376,828.00 kB 06 240,093.50 kB 455,435.00 kB 07 6,527.00 kB 389,010.00 kB 08 261,391.00 kB 489,304.50 kB 09 4,476.00 kB 397,549.00 kB 10 56,910.00 kB 344,659.00 kB 11 23,039.67 kB 286,396.00 kB 12 32,002.50 kB 225,376.50 kB 13 3,647.00 kB 183,254.50 kB 14 4,303.00 kB 149,207.00 kB 15 3,801.00 kB 121,828.00 kB 16 418.50 kB 98,878.00 kB 17 38.00 kB 80,102.00 kB 18 11,209.00 kB 67,011.00 kB 19 249.50 kB 54,325.50 kB 20 263.00 kB 46,350.00 kB 21 19,426.50 kB 41,579.00 kB 22 43,087.00 kB 43,087.00 kB 23 19,153.33 kB 51,357.00 kB -
Temporary Files
Size of temporary files
Key values
- 0 Temp Files size Peak
- Date
Size of temporary files (5 minutes period)
NO DATASET
Number of temporary files
Key values
- 0 per second Temp Files Peak
- Date
Number of temporary files (5 minutes period)
NO DATASET
Temporary Files Activity
↑ Back to the top of the Temporary Files Activity tableDay Hour Count Total size Average size Jun 02 00 0 0 0 01 0 0 0 02 0 0 0 03 0 0 0 04 0 0 0 05 0 0 0 06 0 0 0 07 0 0 0 08 0 0 0 09 0 0 0 10 0 0 0 11 0 0 0 12 0 0 0 13 0 0 0 14 0 0 0 15 0 0 0 16 0 0 0 17 0 0 0 18 0 0 0 19 0 0 0 20 0 0 0 21 0 0 0 22 0 0 0 23 0 0 0 -
Vacuums
Vacuums / Analyzes Distribution
Key values
- 1.11 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment_agent
Database ctdprd51 - 2026-06-02 02:46:31 Date
- 0 sec Highest CPU-cost analyze
Table
Database ctdprd51 - Date
Average Autovacuum Duration
Key values
- 1.11 sec Highest CPU-cost vacuum
Table pub1.term_set_enrichment_agent
Database ctdprd51 - 2026-06-02 02:46:31 Date
Analyzes per table
Key values
- pubc.log_query (16) Main table analyzed (database ctdprd51)
- 35 analyzes Total
Vacuums per table
Key values
- pub1.term_set_enrichment (5) Main table vacuumed on database ctdprd51
- 14 vacuums Total
Index Buffer usage Skipped WAL usage Table Vacuums scans hits misses dirtied pins frozen records full page bytes ctdprd51.pub1.term_set_enrichment 5 0 3,742 0 563 0 0 1,622 8 148,173 ctdprd51.pub1.term_set_enrichment_agent 4 0 165,794 0 4,093 0 0 82,776 7 4,942,051 ctdprd51.pubc.log_query 2 2 500 0 85 0 0 169 67 458,580 ctdprd51.pub1.term_comp_agent 2 0 255 0 46 0 0 38 4 26,000 ctdprd51.pg_catalog.pg_statistic 1 1 754 0 175 0 117 493 155 592,767 Total 14 3 171,045 40 4,962 0 117 85,098 241 6,167,571 Tuples removed per table
Key values
- pg_catalog.pg_statistic (536) Main table with removed tuples on database ctdprd51
- 575 tuples Total removed
Index Tuples Pages Table Vacuums scans removed remain not yet removable removed remain ctdprd51.pg_catalog.pg_statistic 1 1 536 3,402 0 0 410 ctdprd51.pubc.log_query 2 2 39 1,724 0 0 73 ctdprd51.pub1.term_set_enrichment 5 0 0 419,305 0 0 6,942 ctdprd51.pub1.term_comp_agent 2 0 0 12,915 0 0 118 ctdprd51.pub1.term_set_enrichment_agent 4 0 0 26,926,414 0 0 305,984 Total 14 3 575 27,363,760 0 0 313,527 Pages removed per table
Key values
- unknown (0) Main table with removed pages on database unknown
- 0 pages Total removed
Pages removed per tables
NO DATASET
Table Number of vacuums Index scans Tuples removed Pages removed ctdprd51.pubc.log_query 2 2 39 0 ctdprd51.pub1.term_set_enrichment 5 0 0 0 ctdprd51.pub1.term_comp_agent 2 0 0 0 ctdprd51.pg_catalog.pg_statistic 1 1 536 0 ctdprd51.pub1.term_set_enrichment_agent 4 0 0 0 Total 14 3 575 0 Autovacuum Activity
↑ Back to the top of the Autovacuum Activity tableDay Hour VACUUMs ANALYZEs Jun 02 00 0 1 01 3 6 02 4 7 03 2 6 04 0 1 05 2 4 06 0 1 07 1 3 08 0 0 09 0 1 10 2 0 11 0 1 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 1 20 0 0 21 0 0 22 0 2 23 0 1 - 1.11 sec Highest CPU-cost vacuum
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Locks
Locks by types
Key values
- unknown Main Lock Type
- 0 locks Total
Most frequent waiting queries (N)
Rank Count Total time Min time Max time Avg duration Query NO DATASET
Queries that waited the most
Rank Wait time Query NO DATASET
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Queries
Queries by type
Key values
- 49 Total read queries
- 36 Total write queries
Queries by database
Key values
- ctdprd51 Main database
- 51 Requests
- 28m54s (ctdprd51)
- Main time consuming database
Queries by user
Key values
- unknown Main user
- 95 Requests
User Request type Count Duration editeu Total 22 4m42s select 22 4m42s postgres Total 16 17m34s copy to 16 17m34s pubc Total 2 9m29s select 2 9m29s pubeu Total 63 12m26s select 63 12m26s qaeu Total 4 23s840ms select 4 23s840ms unknown Total 95 17m42s copy to 56 11m49s others 1 7s238ms select 38 5m45s Duration by user
Key values
- 17m42s (unknown) Main time consuming user
User Request type Count Duration editeu Total 22 4m42s select 22 4m42s postgres Total 16 17m34s copy to 16 17m34s pubc Total 2 9m29s select 2 9m29s pubeu Total 63 12m26s select 63 12m26s qaeu Total 4 23s840ms select 4 23s840ms unknown Total 95 17m42s copy to 56 11m49s others 1 7s238ms select 38 5m45s Queries by host
Key values
- unknown Main host
- 202 Requests
- 1h2m18s (unknown)
- Main time consuming host
Queries by application
Key values
- unknown Main application
- 77 Requests
- 17m38s (unknown)
- Main time consuming application
Number of cancelled queries
Key values
- 0 per second Cancelled query Peak
- 2026-06-02 04:55:09 Date
Number of cancelled queries (5 minutes period)
NO DATASET
-
Top Queries
Histogram of query times
Key values
- 50 > 10000ms duration
Slowest individual queries
Rank Duration Query 1 9m19s /* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();[ Date: 2026-06-02 00:09:21 - Database: ctdprd51 - User: pubc - Application: psql ]
2 3m16s SELECT /* BatchChemGODAO */ 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE c.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1437162)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;[ Date: 2026-06-02 14:40:07 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
3 1m52s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 06:06:54 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
4 1m52s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 14:06:53 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
5 1m52s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 18:06:55 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
6 1m51s COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 10:06:53 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
7 24s471ms COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 06:07:19 ]
8 24s74ms COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 14:07:17 ]
9 24s32ms COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 10:07:17 ]
10 23s903ms COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;[ Date: 2026-06-02 18:07:19 ]
11 21s234ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;[ Date: 2026-06-02 09:40:32 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
12 20s917ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;[ Date: 2026-06-02 08:54:30 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
13 20s264ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;[ Date: 2026-06-02 08:51:08 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
14 19s917ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;[ Date: 2026-06-02 08:48:28 - Database: ctdprd51 - User: pubeu - Bind query: yes ]
15 19s811ms COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;[ Date: 2026-06-02 06:00:21 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
16 19s722ms SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;[ Date: 2026-06-02 09:38:10 - Bind query: yes ]
17 19s661ms COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;[ Date: 2026-06-02 10:00:22 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
18 19s515ms COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;[ Date: 2026-06-02 14:00:21 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
19 19s378ms COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;[ Date: 2026-06-02 18:00:21 - Database: ctdprd51 - User: postgres - Application: pg_dump ]
20 15s568ms COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;[ Date: 2026-06-02 06:07:34 ]
Time consuming queries (N)
Rank Total duration Times executed Min duration Max duration Avg duration Query 1 9m19s 1 9m19s 9m19s 9m19s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 02 00 1 9m19s 9m19s [ User: pubc - Total duration: 9m19s - Times executed: 1 ]
[ Application: psql - Total duration: 9m19s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-06-02 00:09:21 Duration: 9m19s Database: ctdprd51 User: pubc Application: psql
2 7m28s 4 1m51s 1m52s 1m52s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 02 06 1 1m52s 1m52s 10 1 1m51s 1m51s 14 1 1m52s 1m52s 18 1 1m52s 1m52s [ User: postgres - Total duration: 7m28s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 7m28s - Times executed: 4 ]
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 06:06:54 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 14:06:53 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 18:06:55 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
3 4m3s 18 12s930ms 14s239ms 13s534ms select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, ?), taxon.nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where (upper(a.object_nm) <> upper(t.nm) or t.nm is null) union select distinct i.root_id, edit.get_ixn_prose (i.root_id), ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, ?, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, ?), taxon.nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id inner join edit.ixn i on ri.ixn_id = i.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where (upper(a.anatomy_nm) <> upper(t.nm) or t.nm is null) union select e.id, ?, ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id where (upper(etn.anatomy_term_nm) <> upper(t.nm) or t.nm is null) and anatomy_acc_txt is not null and anatomy_acc_txt <> ? union select e.id, ?, ?, etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_stressor etn left outer join pub1.term t on etn.chem_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_stressor_id = etn.id where (upper(etn.chem_term_nm) <> upper(t.nm) or t.nm is null) and chem_acc_txt is not null and chem_acc_txt <> ? union select e.id, ?, ?, etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_outcome etn left outer join pub1.term t on etn.disease_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where (upper(etn.disease_term_nm) <> upper(t.nm) or t.nm is null) and disease_acc_txt is not null and disease_acc_txt <> ? union select e.id, ?, ?, etn.phenotype_acc_txt as term_acc_txt, etn.phenotype_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_outcome etn left outer join pub1.term t on etn.phenotype_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where (upper(etn.phenotype_term_nm) <> upper(t.nm) or t.nm is null) and phenotype_acc_txt is not null and phenotype_acc_txt <> ? union select e.id, ?, o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id where (upper(etn.term_nm) <> upper(t.nm) or t.nm is null) and term_acc_txt is not null and term_acc_txt <> ? union select etn.id, ?, o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, t.nm, t.acc_txt, ?, ?, ?, ? from edit.medium etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.term_object_type_id = t.object_type_id inner join edit.object_type o on etn.term_object_type_id = o.id where (upper(etn.term_nm) <> upper(t.nm) or t.nm is null) and etn.term_acc_txt is not null and etn.term_acc_txt <> ? union select etn.id, ?, o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id where (upper(etn.exp_marker_term_nm) <> upper(t.nm) or t.nm is null) and etn.exp_marker_acc_txt is not null and exp_marker_acc_txt <> ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 02 06 1 14s239ms 14s239ms 07 1 14s52ms 14s52ms 08 1 13s556ms 13s556ms 09 3 40s471ms 13s490ms 10 3 40s930ms 13s643ms 12 3 40s116ms 13s372ms 13 2 26s237ms 13s118ms 14 3 40s236ms 13s412ms 15 1 13s781ms 13s781ms [ User: editeu - Total duration: 4m3s - Times executed: 18 ]
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select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 06:58:19 Duration: 14s239ms Database: ctdprd51 User: editeu Bind query: yes
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select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 07:53:27 Duration: 14s52ms Database: ctdprd51 User: editeu Bind query: yes
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select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 09:16:03 Duration: 13s976ms Database: ctdprd51 User: editeu Bind query: yes
4 3m16s 1 3m16s 3m16s 3m16s select 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where c.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 02 14 1 3m16s 3m16s [ User: pubeu - Total duration: 3m16s - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE c.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1437162)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 14:40:07 Duration: 3m16s Database: ctdprd51 User: pubeu Bind query: yes
5 1m42s 5 19s722ms 21s234ms 20s411ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 02 08 3 1m1s 20s366ms 09 2 40s957ms 20s478ms [ User: pubeu - Total duration: 1m22s - Times executed: 4 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 09:40:32 Duration: 21s234ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 08:54:30 Duration: 20s917ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 08:51:08 Duration: 20s264ms Database: ctdprd51 User: pubeu Bind query: yes
6 1m36s 4 23s903ms 24s471ms 24s120ms copy pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 02 06 1 24s471ms 24s471ms 10 1 24s32ms 24s32ms 14 1 24s74ms 24s74ms 18 1 23s903ms 23s903ms -
COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 06:07:19 Duration: 24s471ms
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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 14:07:17 Duration: 24s74ms
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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 10:07:17 Duration: 24s32ms
7 1m18s 4 19s378ms 19s811ms 19s591ms copy edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 02 06 1 19s811ms 19s811ms 10 1 19s661ms 19s661ms 14 1 19s515ms 19s515ms 18 1 19s378ms 19s378ms [ User: postgres - Total duration: 1m18s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 1m18s - Times executed: 4 ]
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:21 Duration: 19s811ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:22 Duration: 19s661ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:21 Duration: 19s515ms Database: ctdprd51 User: postgres Application: pg_dump
8 1m1s 4 15s350ms 15s568ms 15s442ms copy pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 02 06 1 15s568ms 15s568ms 10 1 15s383ms 15s383ms 14 1 15s467ms 15s467ms 18 1 15s350ms 15s350ms -
COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 06:07:34 Duration: 15s568ms
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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 14:07:33 Duration: 15s467ms
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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 10:07:33 Duration: 15s383ms
9 58s941ms 4 14s681ms 14s783ms 14s735ms copy edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 02 06 1 14s783ms 14s783ms 10 1 14s783ms 14s783ms 14 1 14s681ms 14s681ms 18 1 14s692ms 14s692ms -
COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:53 Duration: 14s783ms
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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:52 Duration: 14s783ms
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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 18:00:51 Duration: 14s692ms
10 58s73ms 4 14s438ms 14s571ms 14s518ms copy edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 02 06 1 14s571ms 14s571ms 10 1 14s511ms 14s511ms 14 1 14s552ms 14s552ms 18 1 14s438ms 14s438ms -
COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:01:07 Duration: 14s571ms
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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:01:06 Duration: 14s552ms
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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:01:07 Duration: 14s511ms
11 55s754ms 10 5s157ms 6s142ms 5s575ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 02 11 5 27s784ms 5s556ms 16 5 27s970ms 5s594ms [ User: pubeu - Total duration: 39s453ms - Times executed: 7 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1458788' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 16:12:50 Duration: 6s142ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1442137' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 11:58:58 Duration: 5s893ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1442137' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 11:59:04 Duration: 5s661ms Bind query: yes
12 31s683ms 5 6s240ms 6s459ms 6s336ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 02 07 1 6s289ms 6s289ms 10 4 25s393ms 6s348ms [ User: pubeu - Total duration: 18s838ms - Times executed: 3 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:34 Duration: 6s459ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:34 Duration: 6s385ms Bind query: yes
-
SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:23 Duration: 6s307ms Database: ctdprd51 User: pubeu Bind query: yes
13 29s710ms 4 7s362ms 7s524ms 7s427ms copy edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 02 06 1 7s416ms 7s416ms 10 1 7s524ms 7s524ms 14 1 7s406ms 7s406ms 18 1 7s362ms 7s362ms -
COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:31 Duration: 7s524ms
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COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:31 Duration: 7s416ms
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COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:30 Duration: 7s406ms
14 25s800ms 4 6s397ms 6s480ms 6s450ms copy edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 02 06 1 6s463ms 6s463ms 10 1 6s458ms 6s458ms 14 1 6s480ms 6s480ms 18 1 6s397ms 6s397ms -
COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:01:14 Duration: 6s480ms
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COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:01:15 Duration: 6s463ms
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COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:01:15 Duration: 6s458ms
15 24s813ms 3 8s143ms 8s388ms 8s271ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 02 08 1 8s281ms 8s281ms 09 2 16s532ms 8s266ms [ User: pubeu - Total duration: 24s813ms - Times executed: 3 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 09:48:45 Duration: 8s388ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 08:47:13 Duration: 8s281ms Database: ctdprd51 User: pubeu Bind query: yes
-
SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 09:36:52 Duration: 8s143ms Database: ctdprd51 User: pubeu Bind query: yes
16 24s434ms 4 6s69ms 6s128ms 6s108ms copy edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 02 06 1 6s126ms 6s126ms 10 1 6s128ms 6s128ms 14 1 6s110ms 6s110ms 18 1 6s69ms 6s69ms -
COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:38 Duration: 6s128ms
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COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:37 Duration: 6s126ms
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COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:36 Duration: 6s110ms
17 11s377ms 2 5s633ms 5s744ms 5s688ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 02 05 2 11s377ms 5s688ms [ User: qaeu - Total duration: 5s744ms - Times executed: 1 ]
[ User: pubeu - Total duration: 5s633ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1398646)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 05:43:43 Duration: 5s744ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1398646)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 05:48:49 Duration: 5s633ms Database: ctdprd51 User: pubeu Bind query: yes
18 11s305ms 2 5s35ms 6s270ms 5s652ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 02 04 1 6s270ms 6s270ms 22 1 5s35ms 5s35ms [ User: pubeu - Total duration: 11s305ms - Times executed: 2 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1525660') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1525660') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-06-02 04:28:35 Duration: 6s270ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1442013') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1442013') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-06-02 22:18:25 Duration: 5s35ms Database: ctdprd51 User: pubeu Bind query: yes
19 10s776ms 1 10s776ms 10s776ms 10s776ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 02 21 1 10s776ms 10s776ms [ User: pubeu - Total duration: 10s776ms - Times executed: 1 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '(N-HYDROXYNOTOAMIDE | NHYDROXYNOTOAMIDE) & I_130069') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '(N-HYDROXYNOTOAMIDE | NHYDROXYNOTOAMIDE) & I_130069') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(N-HYDROXYNOTOAMIDE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'NHYDROXYNOTOAMIDE)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'I_130069')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'N-HYDROXYNOTOAMIDE' OR upper(l.acc_txt) LIKE 'I_130069')) ii GROUP BY ii.cd;
Date: 2026-06-02 21:53:50 Duration: 10s776ms Database: ctdprd51 User: pubeu Bind query: yes
20 8s247ms 1 8s247ms 8s247ms 8s247ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 02 00 1 8s247ms 8s247ms [ User: pubeu - Total duration: 8s247ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 00:05:29 Duration: 8s247ms Database: ctdprd51 User: pubeu Bind query: yes
Most frequent queries (N)
Rank Times executed Total duration Min duration Max duration Avg duration Query 1 18 4m3s 12s930ms 14s239ms 13s534ms select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, ?), taxon.nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where (upper(a.object_nm) <> upper(t.nm) or t.nm is null) union select distinct i.root_id, edit.get_ixn_prose (i.root_id), ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, ?, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, ?), taxon.nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id inner join edit.ixn i on ri.ixn_id = i.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where (upper(a.anatomy_nm) <> upper(t.nm) or t.nm is null) union select e.id, ?, ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id where (upper(etn.anatomy_term_nm) <> upper(t.nm) or t.nm is null) and anatomy_acc_txt is not null and anatomy_acc_txt <> ? union select e.id, ?, ?, etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_stressor etn left outer join pub1.term t on etn.chem_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_stressor_id = etn.id where (upper(etn.chem_term_nm) <> upper(t.nm) or t.nm is null) and chem_acc_txt is not null and chem_acc_txt <> ? union select e.id, ?, ?, etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_outcome etn left outer join pub1.term t on etn.disease_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where (upper(etn.disease_term_nm) <> upper(t.nm) or t.nm is null) and disease_acc_txt is not null and disease_acc_txt <> ? union select e.id, ?, ?, etn.phenotype_acc_txt as term_acc_txt, etn.phenotype_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_outcome etn left outer join pub1.term t on etn.phenotype_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where (upper(etn.phenotype_term_nm) <> upper(t.nm) or t.nm is null) and phenotype_acc_txt is not null and phenotype_acc_txt <> ? union select e.id, ?, o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id where (upper(etn.term_nm) <> upper(t.nm) or t.nm is null) and term_acc_txt is not null and term_acc_txt <> ? union select etn.id, ?, o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, t.nm, t.acc_txt, ?, ?, ?, ? from edit.medium etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.term_object_type_id = t.object_type_id inner join edit.object_type o on etn.term_object_type_id = o.id where (upper(etn.term_nm) <> upper(t.nm) or t.nm is null) and etn.term_acc_txt is not null and etn.term_acc_txt <> ? union select etn.id, ?, o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id where (upper(etn.exp_marker_term_nm) <> upper(t.nm) or t.nm is null) and etn.exp_marker_acc_txt is not null and exp_marker_acc_txt <> ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 02 06 1 14s239ms 14s239ms 07 1 14s52ms 14s52ms 08 1 13s556ms 13s556ms 09 3 40s471ms 13s490ms 10 3 40s930ms 13s643ms 12 3 40s116ms 13s372ms 13 2 26s237ms 13s118ms 14 3 40s236ms 13s412ms 15 1 13s781ms 13s781ms [ User: editeu - Total duration: 4m3s - Times executed: 18 ]
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select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 06:58:19 Duration: 14s239ms Database: ctdprd51 User: editeu Bind query: yes
-
select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 07:53:27 Duration: 14s52ms Database: ctdprd51 User: editeu Bind query: yes
-
select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 09:16:03 Duration: 13s976ms Database: ctdprd51 User: editeu Bind query: yes
2 10 55s754ms 5s157ms 6s142ms 5s575ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 02 11 5 27s784ms 5s556ms 16 5 27s970ms 5s594ms [ User: pubeu - Total duration: 39s453ms - Times executed: 7 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1458788' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 16:12:50 Duration: 6s142ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1442137' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 11:58:58 Duration: 5s893ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1442137' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 11:59:04 Duration: 5s661ms Bind query: yes
3 5 1m42s 19s722ms 21s234ms 20s411ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 02 08 3 1m1s 20s366ms 09 2 40s957ms 20s478ms [ User: pubeu - Total duration: 1m22s - Times executed: 4 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 09:40:32 Duration: 21s234ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 08:54:30 Duration: 20s917ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 08:51:08 Duration: 20s264ms Database: ctdprd51 User: pubeu Bind query: yes
4 5 31s683ms 6s240ms 6s459ms 6s336ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 02 07 1 6s289ms 6s289ms 10 4 25s393ms 6s348ms [ User: pubeu - Total duration: 18s838ms - Times executed: 3 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:34 Duration: 6s459ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:34 Duration: 6s385ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:23 Duration: 6s307ms Database: ctdprd51 User: pubeu Bind query: yes
5 4 7m28s 1m51s 1m52s 1m52s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 02 06 1 1m52s 1m52s 10 1 1m51s 1m51s 14 1 1m52s 1m52s 18 1 1m52s 1m52s [ User: postgres - Total duration: 7m28s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 7m28s - Times executed: 4 ]
-
COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 06:06:54 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 14:06:53 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 18:06:55 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
6 4 1m36s 23s903ms 24s471ms 24s120ms copy pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 02 06 1 24s471ms 24s471ms 10 1 24s32ms 24s32ms 14 1 24s74ms 24s74ms 18 1 23s903ms 23s903ms -
COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 06:07:19 Duration: 24s471ms
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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 14:07:17 Duration: 24s74ms
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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 10:07:17 Duration: 24s32ms
7 4 1m18s 19s378ms 19s811ms 19s591ms copy edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 02 06 1 19s811ms 19s811ms 10 1 19s661ms 19s661ms 14 1 19s515ms 19s515ms 18 1 19s378ms 19s378ms [ User: postgres - Total duration: 1m18s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 1m18s - Times executed: 4 ]
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:21 Duration: 19s811ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:22 Duration: 19s661ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:21 Duration: 19s515ms Database: ctdprd51 User: postgres Application: pg_dump
8 4 1m1s 15s350ms 15s568ms 15s442ms copy pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 02 06 1 15s568ms 15s568ms 10 1 15s383ms 15s383ms 14 1 15s467ms 15s467ms 18 1 15s350ms 15s350ms -
COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 06:07:34 Duration: 15s568ms
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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 14:07:33 Duration: 15s467ms
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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 10:07:33 Duration: 15s383ms
9 4 58s941ms 14s681ms 14s783ms 14s735ms copy edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 02 06 1 14s783ms 14s783ms 10 1 14s783ms 14s783ms 14 1 14s681ms 14s681ms 18 1 14s692ms 14s692ms -
COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:53 Duration: 14s783ms
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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:52 Duration: 14s783ms
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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 18:00:51 Duration: 14s692ms
10 4 58s73ms 14s438ms 14s571ms 14s518ms copy edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 02 06 1 14s571ms 14s571ms 10 1 14s511ms 14s511ms 14 1 14s552ms 14s552ms 18 1 14s438ms 14s438ms -
COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:01:07 Duration: 14s571ms
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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:01:06 Duration: 14s552ms
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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:01:07 Duration: 14s511ms
11 4 29s710ms 7s362ms 7s524ms 7s427ms copy edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 02 06 1 7s416ms 7s416ms 10 1 7s524ms 7s524ms 14 1 7s406ms 7s406ms 18 1 7s362ms 7s362ms -
COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:31 Duration: 7s524ms
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COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:31 Duration: 7s416ms
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COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:30 Duration: 7s406ms
12 4 25s800ms 6s397ms 6s480ms 6s450ms copy edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 02 06 1 6s463ms 6s463ms 10 1 6s458ms 6s458ms 14 1 6s480ms 6s480ms 18 1 6s397ms 6s397ms -
COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:01:14 Duration: 6s480ms
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COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:01:15 Duration: 6s463ms
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COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:01:15 Duration: 6s458ms
13 4 24s434ms 6s69ms 6s128ms 6s108ms copy edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 02 06 1 6s126ms 6s126ms 10 1 6s128ms 6s128ms 14 1 6s110ms 6s110ms 18 1 6s69ms 6s69ms -
COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:38 Duration: 6s128ms
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COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:37 Duration: 6s126ms
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COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:36 Duration: 6s110ms
14 3 24s813ms 8s143ms 8s388ms 8s271ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 02 08 1 8s281ms 8s281ms 09 2 16s532ms 8s266ms [ User: pubeu - Total duration: 24s813ms - Times executed: 3 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 09:48:45 Duration: 8s388ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 08:47:13 Duration: 8s281ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 09:36:52 Duration: 8s143ms Database: ctdprd51 User: pubeu Bind query: yes
15 2 11s377ms 5s633ms 5s744ms 5s688ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 02 05 2 11s377ms 5s688ms [ User: qaeu - Total duration: 5s744ms - Times executed: 1 ]
[ User: pubeu - Total duration: 5s633ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1398646)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 05:43:43 Duration: 5s744ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1398646)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 05:48:49 Duration: 5s633ms Database: ctdprd51 User: pubeu Bind query: yes
16 2 11s305ms 5s35ms 6s270ms 5s652ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 02 04 1 6s270ms 6s270ms 22 1 5s35ms 5s35ms [ User: pubeu - Total duration: 11s305ms - Times executed: 2 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1525660') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1525660') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-06-02 04:28:35 Duration: 6s270ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1442013') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1442013') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-06-02 22:18:25 Duration: 5s35ms Database: ctdprd51 User: pubeu Bind query: yes
17 1 9m19s 9m19s 9m19s 9m19s select maint_query_logs_archive ();Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 02 00 1 9m19s 9m19s [ User: pubc - Total duration: 9m19s - Times executed: 1 ]
[ Application: psql - Total duration: 9m19s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-06-02 00:09:21 Duration: 9m19s Database: ctdprd51 User: pubc Application: psql
18 1 3m16s 3m16s 3m16s 3m16s select 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where c.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 02 14 1 3m16s 3m16s [ User: pubeu - Total duration: 3m16s - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE c.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1437162)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 14:40:07 Duration: 3m16s Database: ctdprd51 User: pubeu Bind query: yes
19 1 10s776ms 10s776ms 10s776ms 10s776ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 02 21 1 10s776ms 10s776ms [ User: pubeu - Total duration: 10s776ms - Times executed: 1 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '(N-HYDROXYNOTOAMIDE | NHYDROXYNOTOAMIDE) & I_130069') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '(N-HYDROXYNOTOAMIDE | NHYDROXYNOTOAMIDE) & I_130069') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(N-HYDROXYNOTOAMIDE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'NHYDROXYNOTOAMIDE)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'I_130069')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'N-HYDROXYNOTOAMIDE' OR upper(l.acc_txt) LIKE 'I_130069')) ii GROUP BY ii.cd;
Date: 2026-06-02 21:53:50 Duration: 10s776ms Database: ctdprd51 User: pubeu Bind query: yes
20 1 8s247ms 8s247ms 8s247ms 8s247ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 02 00 1 8s247ms 8s247ms [ User: pubeu - Total duration: 8s247ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 00:05:29 Duration: 8s247ms Database: ctdprd51 User: pubeu Bind query: yes
Normalized slowest queries (N)
Rank Min duration Max duration Avg duration Times executed Total duration Query 1 9m19s 9m19s 9m19s 1 9m19s select maint_query_logs_archive ();Times Reported Time consuming queries #1
Day Hour Count Duration Avg duration Jun 02 00 1 9m19s 9m19s [ User: pubc - Total duration: 9m19s - Times executed: 1 ]
[ Application: psql - Total duration: 9m19s - Times executed: 1 ]
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/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();
Date: 2026-06-02 00:09:21 Duration: 9m19s Database: ctdprd51 User: pubc Application: psql
2 3m16s 3m16s 3m16s 1 3m16s select 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where c.id in ( select distinct dp.descendant_object_id from dag_path dp where dp.ancestor_object_id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #2
Day Hour Count Duration Avg duration Jun 02 14 1 3m16s 3m16s [ User: pubeu - Total duration: 3m16s - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'metals "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE c.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = 1437162)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 14:40:07 Duration: 3m16s Database: ctdprd51 User: pubeu Bind query: yes
3 1m51s 1m52s 1m52s 4 7m28s copy pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #3
Day Hour Count Duration Avg duration Jun 02 06 1 1m52s 1m52s 10 1 1m51s 1m51s 14 1 1m52s 1m52s 18 1 1m52s 1m52s [ User: postgres - Total duration: 7m28s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 7m28s - Times executed: 4 ]
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 06:06:54 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 14:06:53 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
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COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 18:06:55 Duration: 1m52s Database: ctdprd51 User: postgres Application: pg_dump
4 23s903ms 24s471ms 24s120ms 4 1m36s copy pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) to stdout;Times Reported Time consuming queries #4
Day Hour Count Duration Avg duration Jun 02 06 1 24s471ms 24s471ms 10 1 24s32ms 24s32ms 14 1 24s74ms 24s74ms 18 1 23s903ms 23s903ms -
COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 06:07:19 Duration: 24s471ms
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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 14:07:17 Duration: 24s74ms
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COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;
Date: 2026-06-02 10:07:17 Duration: 24s32ms
5 19s722ms 21s234ms 20s411ms 5 1m42s select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt;Times Reported Time consuming queries #5
Day Hour Count Duration Avg duration Jun 02 08 3 1m1s 20s366ms 09 2 40s957ms 20s478ms [ User: pubeu - Total duration: 1m22s - Times executed: 4 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 09:40:32 Duration: 21s234ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 08:54:30 Duration: 20s917ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt;
Date: 2026-06-02 08:51:08 Duration: 20s264ms Database: ctdprd51 User: pubeu Bind query: yes
6 19s378ms 19s811ms 19s591ms 4 1m18s copy edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #6
Day Hour Count Duration Avg duration Jun 02 06 1 19s811ms 19s811ms 10 1 19s661ms 19s661ms 14 1 19s515ms 19s515ms 18 1 19s378ms 19s378ms [ User: postgres - Total duration: 1m18s - Times executed: 4 ]
[ Application: pg_dump - Total duration: 1m18s - Times executed: 4 ]
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:21 Duration: 19s811ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:22 Duration: 19s661ms Database: ctdprd51 User: postgres Application: pg_dump
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COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:21 Duration: 19s515ms Database: ctdprd51 User: postgres Application: pg_dump
7 15s350ms 15s568ms 15s442ms 4 1m1s copy pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) to stdout;Times Reported Time consuming queries #7
Day Hour Count Duration Avg duration Jun 02 06 1 15s568ms 15s568ms 10 1 15s383ms 15s383ms 14 1 15s467ms 15s467ms 18 1 15s350ms 15s350ms -
COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 06:07:34 Duration: 15s568ms
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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 14:07:33 Duration: 15s467ms
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COPY pubc.log_query_bots_original (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status, user_agent_pattern) TO stdout;
Date: 2026-06-02 10:07:33 Duration: 15s383ms
8 14s681ms 14s783ms 14s735ms 4 58s941ms copy edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #8
Day Hour Count Duration Avg duration Jun 02 06 1 14s783ms 14s783ms 10 1 14s783ms 14s783ms 14 1 14s681ms 14s681ms 18 1 14s692ms 14s692ms -
COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:53 Duration: 14s783ms
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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:52 Duration: 14s783ms
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COPY edit.ixn_actor (ixn_id, position_seq, object_type_id, acc_txt, acc_db_id, object_nm, actor_form_type_id, qual_actor_form_type_id, seq_acc_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 18:00:51 Duration: 14s692ms
9 14s438ms 14s571ms 14s518ms 4 58s73ms copy edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #9
Day Hour Count Duration Avg duration Jun 02 06 1 14s571ms 14s571ms 10 1 14s511ms 14s511ms 14 1 14s552ms 14s552ms 18 1 14s438ms 14s438ms -
COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:01:07 Duration: 14s571ms
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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:01:06 Duration: 14s552ms
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COPY edit.reference (id, title, journal_nm, issue, pages_txt, page_position_seq, volume, pub_dt_format_mask, pub_start_dt, pub_end_dt, pub_start_season_nm, pub_end_season_nm, is_review, is_author_list_complete, affiliation_txt, abstract_txt, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:01:07 Duration: 14s511ms
10 12s930ms 14s239ms 13s534ms 18 4m3s select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, ?), taxon.nm from edit.ixn_actor a left outer join pub1.term t on a.acc_txt = t.acc_txt and a.object_type_id = t.object_type_id inner join edit.object_type o on a.object_type_id = o.id inner join edit.ixn i on a.ixn_id = i.id inner join edit.reference_ixn ri on i.root_id = ri.ixn_id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where (upper(a.object_nm) <> upper(t.nm) or t.nm is null) union select distinct i.root_id, edit.get_ixn_prose (i.root_id), ?, a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, ?, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, ?), taxon.nm from edit.reference_ixn_anatomy a left outer join pub1.term t on a.anatomy_acc_txt = t.acc_txt and t.object_type_id = ? inner join edit.reference_ixn ri on a.reference_ixn_id = ri.id inner join edit.ixn i on ri.ixn_id = i.id left outer join pub1.term taxon on ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = ? where (upper(a.anatomy_nm) <> upper(t.nm) or t.nm is null) union select e.id, ?, ?, etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_anatomy etn left outer join pub1.term t on etn.anatomy_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.exp_outcome_id where (upper(etn.anatomy_term_nm) <> upper(t.nm) or t.nm is null) and anatomy_acc_txt is not null and anatomy_acc_txt <> ? union select e.id, ?, ?, etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_stressor etn left outer join pub1.term t on etn.chem_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_stressor_id = etn.id where (upper(etn.chem_term_nm) <> upper(t.nm) or t.nm is null) and chem_acc_txt is not null and chem_acc_txt <> ? union select e.id, ?, ?, etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_outcome etn left outer join pub1.term t on etn.disease_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where (upper(etn.disease_term_nm) <> upper(t.nm) or t.nm is null) and disease_acc_txt is not null and disease_acc_txt <> ? union select e.id, ?, ?, etn.phenotype_acc_txt as term_acc_txt, etn.phenotype_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_outcome etn left outer join pub1.term t on etn.phenotype_acc_txt = t.acc_txt and ? = t.object_type_id inner join edit.object_type o on ? = o.id inner join edit.exposure e on e.exp_outcome_id = etn.id where (upper(etn.phenotype_term_nm) <> upper(t.nm) or t.nm is null) and phenotype_acc_txt is not null and phenotype_acc_txt <> ? union select e.id, ?, o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_receptor etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.object_type_id = t.object_type_id inner join edit.object_type o on etn.object_type_id = o.id inner join edit.exposure e on e.exp_receptor_id = etn.id where (upper(etn.term_nm) <> upper(t.nm) or t.nm is null) and term_acc_txt is not null and term_acc_txt <> ? union select etn.id, ?, o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, ?, t.nm, t.acc_txt, ?, ?, ?, ? from edit.medium etn left outer join pub1.term t on etn.term_acc_txt = t.acc_txt and etn.term_object_type_id = t.object_type_id inner join edit.object_type o on etn.term_object_type_id = o.id where (upper(etn.term_nm) <> upper(t.nm) or t.nm is null) and etn.term_acc_txt is not null and etn.term_acc_txt <> ? union select etn.id, ?, o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, ?, t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, ?), ? from edit.exp_event etn inner join edit.exp_marker_type emt on etn.exp_marker_type_id = emt.id inner join edit.object_type o on emt.object_type_id = o.id left outer join pub1.term t on etn.exp_marker_acc_txt = t.acc_txt and o.id = t.object_type_id inner join edit.exposure e on e.exp_event_id = etn.id where (upper(etn.exp_marker_term_nm) <> upper(t.nm) or t.nm is null) and etn.exp_marker_acc_txt is not null and exp_marker_acc_txt <> ? order by term_nm, term_acc_txt;Times Reported Time consuming queries #10
Day Hour Count Duration Avg duration Jun 02 06 1 14s239ms 14s239ms 07 1 14s52ms 14s52ms 08 1 13s556ms 13s556ms 09 3 40s471ms 13s490ms 10 3 40s930ms 13s643ms 12 3 40s116ms 13s372ms 13 2 26s237ms 13s118ms 14 3 40s236ms 13s412ms 15 1 13s781ms 13s781ms [ User: editeu - Total duration: 4m3s - Times executed: 18 ]
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select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 06:58:19 Duration: 14s239ms Database: ctdprd51 User: editeu Bind query: yes
-
select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 07:53:27 Duration: 14s52ms Database: ctdprd51 User: editeu Bind query: yes
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select distinct i.root_id, edit.get_ixn_prose (i.root_id), o.cd, a.acc_txt as term_acc_txt, a.object_nm as term_nm, a.seq_acc_txt, t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.IXN_ACTOR a LEFT OUTER JOIN pub1.TERM t ON a.acc_txt = t.acc_txt AND a.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON a.object_type_id = o.id INNER JOIN edit.IXN i ON a.ixn_id = i.id INNER JOIN edit.REFERENCE_IXN ri ON i.root_id = ri.ixn_id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.object_nm) <> upper(t.nm) OR t.nm is null) UNION select distinct i.root_id, edit.get_ixn_prose (i.root_id), 'anatomy', a.anatomy_acc_txt as term_acc_txt, a.anatomy_nm as term_nm, '', t.nm, t.acc_txt, ri.reference_acc_txt, ri.create_by, to_char(ri.create_tm, 'mm-dd-yyyy'), taxon.nm from edit.REFERENCE_IXN_ANATOMY a LEFT OUTER JOIN pub1.TERM t ON a.anatomy_acc_txt = t.acc_txt AND t.object_type_id = 10 INNER JOIN edit.REFERENCE_IXN ri ON a.reference_ixn_id = ri.id INNER JOIN edit.IXN i ON ri.ixn_id = i.id LEFT OUTER JOIN pub1.TERM taxon ON ri.taxon_acc_txt = taxon.acc_txt and taxon.object_type_id = 1 WHERE (upper(a.anatomy_nm) <> upper(t.nm) OR t.nm is null) UNION select e.id, '', 'anatomy', etn.anatomy_acc_txt as term_acc_txt, etn.anatomy_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_ANATOMY etn LEFT OUTER JOIN pub1.TERM t ON etn.anatomy_acc_txt = t.acc_txt AND 10 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 10 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.exp_outcome_id WHERE (upper(etn.anatomy_term_nm) <> upper(t.nm) OR t.nm is null) and anatomy_acc_txt is not null AND anatomy_acc_txt <> '' UNION select e.id, '', 'chem', etn.chem_acc_txt as term_acc_txt, etn.chem_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_STRESSOR etn LEFT OUTER JOIN pub1.TERM t ON etn.chem_acc_txt = t.acc_txt AND 2 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 2 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_stressor_id = etn.id WHERE (upper(etn.chem_term_nm) <> upper(t.nm) OR t.nm is null) and chem_acc_txt is not null AND chem_acc_txt <> '' UNION select e.id, '', 'disease', etn.disease_acc_txt as term_acc_txt, etn.disease_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.disease_acc_txt = t.acc_txt AND 3 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 3 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.disease_term_nm) <> upper(t.nm) OR t.nm is null) and disease_acc_txt is not null AND disease_acc_txt <> '' UNION select e.id, '', 'go', etn.phenotype_acc_txt as term_acc_txt, etn.PHENOTYPE_TERM_NM as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_OUTCOME etn LEFT OUTER JOIN pub1.TERM t ON etn.phenotype_acc_txt = t.acc_txt AND 5 = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON 5 = o.id INNER JOIN edit.EXPOSURE e ON e.exp_outcome_id = etn.id WHERE (upper(etn.PHENOTYPE_TERM_NM) <> upper(t.nm) OR t.nm is null) and phenotype_acc_txt is not null AND phenotype_acc_txt <> '' UNION select e.id, '', o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_RECEPTOR etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.object_type_id = o.id INNER JOIN edit.EXPOSURE e ON e.exp_receptor_id = etn.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and term_acc_txt is not null AND term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.term_acc_txt as term_acc_txt, etn.term_nm as term_nm, 'Medium Record - No Seq', t.nm, t.acc_txt, '', -- reference accession '', -- create_by '', -- create_tm 'Medium Record - no Taxon' from edit.MEDIUM etn LEFT OUTER JOIN pub1.TERM t ON etn.term_acc_txt = t.acc_txt AND etn.term_object_type_id = t.object_type_id INNER JOIN edit.OBJECT_TYPE o ON etn.term_object_type_id = o.id WHERE (upper(etn.term_nm) <> upper(t.nm) OR t.nm is null) and etn.term_acc_txt is not null AND etn.term_acc_txt <> '' UNION select etn.id, '', -- Ixn txt o.cd, etn.exp_marker_acc_txt as term_acc_txt, etn.exp_marker_term_nm as term_nm, 'Exposure Record - No Seq', t.nm, t.acc_txt, e.reference_acc_txt, e.create_by, to_char(e.create_tm, 'mm-dd-yyyy'), 'Homo sapiens' -- Exposure taxon always 9606 from edit.EXP_EVENT etn INNER JOIN edit.EXP_MARKER_TYPE emt ON etn.exp_marker_type_id = emt.id INNER JOIN edit.OBJECT_TYPE o ON emt.object_type_id = o.id LEFT OUTER JOIN pub1.TERM t ON etn.exp_marker_acc_txt = t.acc_txt AND o.id = t.object_type_id INNER JOIN edit.EXPOSURE e ON e.exp_event_id = etn.id WHERE (upper(etn.exp_marker_term_nm) <> upper(t.nm) OR t.nm is null) and etn.exp_marker_acc_txt is not null AND exp_marker_acc_txt <> '' order by term_nm, term_acc_txt;
Date: 2026-06-02 09:16:03 Duration: 13s976ms Database: ctdprd51 User: editeu Bind query: yes
11 10s776ms 10s776ms 10s776ms 1 10s776ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ? or substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ? or upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #11
Day Hour Count Duration Avg duration Jun 02 21 1 10s776ms 10s776ms [ User: pubeu - Total duration: 10s776ms - Times executed: 1 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', '(N-HYDROXYNOTOAMIDE | NHYDROXYNOTOAMIDE) & I_130069') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', '(N-HYDROXYNOTOAMIDE | NHYDROXYNOTOAMIDE) & I_130069') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE '(N-HYDROXYNOTOAMIDE' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'NHYDROXYNOTOAMIDE)' OR SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'I_130069')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'N-HYDROXYNOTOAMIDE' OR upper(l.acc_txt) LIKE 'I_130069')) ii GROUP BY ii.cd;
Date: 2026-06-02 21:53:50 Duration: 10s776ms Database: ctdprd51 User: pubeu Bind query: yes
12 8s143ms 8s388ms 8s271ms 3 24s813ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select t.id from term t where t.nm_fts @@ to_tsquery(?, ?) and t.object_type_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #12
Day Hour Count Duration Avg duration Jun 02 08 1 8s281ms 8s281ms 09 2 16s532ms 8s266ms [ User: pubeu - Total duration: 24s813ms - Times executed: 3 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 09:48:45 Duration: 8s388ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 08:47:13 Duration: 8s281ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereContains */ t.id FROM term t WHERE t.nm_fts @@ to_tsquery('common.english_nostops', 'HOMO & SAPIENS') AND t.object_type_id = 1)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 09:36:52 Duration: 8s143ms Database: ctdprd51 User: pubeu Bind query: yes
13 8s247ms 8s247ms 8s247ms 1 8s247ms select g.nm genesymbol, g.id geneid, g.acc_txt geneacc, g.acc_db_cd geneaccdbcd, c.nm chemnm, c.nm_html chemnmhtml, c.acc_txt chemacc, c.secondary_nm casrn, c.id chemid, i.id ixnid, i.ixn_prose_txt ixnprose, i.ixn_prose_html ixnprosehtml, i.actions_txt ixnactions, count(distinct gcr.reference_id) refcount, count(distinct gcr.taxon_id) taxoncount, ( select string_agg(distinct taxonterm.nm || ? || ? || ? || taxonterm.nm_html || ? || taxonterm.acc_txt || ? || taxonterm.acc_db_cd || ? || coalesce(taxonterm.secondary_nm, ?), ?)) as taxonterms, ( select string_agg(distinct r.acc_txt, ?)) as references, count(*) over () fullrowcount from gene_chem_reference gcr inner join ixn i on gcr.ixn_id = i.id inner join term g on gcr.gene_id = g.id inner join term c on gcr.chem_id = c.id inner join reference r on gcr.reference_id = r.id left outer join term taxonterm on gcr.taxon_id = taxonterm.id where gcr.taxon_id = any (array ( select dp.descendant_object_id from dag_path dp inner join dag_node n on n.id = dp.ancestor_dag_node_id where n.acc_txt = ? and n.dag_id = ?)) group by g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id order by c.nm_sort, g.nm_sort, i.sort_txt limit ?;Times Reported Time consuming queries #13
Day Hour Count Duration Avg duration Jun 02 00 1 8s247ms 8s247ms [ User: pubeu - Total duration: 8s247ms - Times executed: 1 ]
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SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.taxon_id = ANY (ARRAY ( SELECT /* CIQH.getIxnTaxonWhereEquals.Acc */ dp.descendant_object_id FROM dag_path dp INNER JOIN dag_node n ON n.id = dp.ancestor_dag_node_id WHERE n.acc_txt = '9606' AND n.dag_id = 7)) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY c.nm_sort, g.nm_sort, i.sort_txt LIMIT 50;
Date: 2026-06-02 00:05:29 Duration: 8s247ms Database: ctdprd51 User: pubeu Bind query: yes
14 7s362ms 7s524ms 7s427ms 4 29s710ms copy edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #14
Day Hour Count Duration Avg duration Jun 02 06 1 7s416ms 7s416ms 10 1 7s524ms 7s524ms 14 1 7s406ms 7s406ms 18 1 7s362ms 7s362ms -
COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:31 Duration: 7s524ms
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COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:31 Duration: 7s416ms
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COPY edit.ixn (id, ixn_type_id, parent_id, position_seq, root_id, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:30 Duration: 7s406ms
15 6s397ms 6s480ms 6s450ms 4 25s800ms copy edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #15
Day Hour Count Duration Avg duration Jun 02 06 1 6s463ms 6s463ms 10 1 6s458ms 6s458ms 14 1 6s480ms 6s480ms 18 1 6s397ms 6s397ms -
COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:01:14 Duration: 6s480ms
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COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:01:15 Duration: 6s463ms
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COPY edit.reference_ixn (id, reference_acc_txt, reference_acc_db_id, ixn_id, taxon_acc_txt, taxon_acc_db_id, evidence_cd, source_cd, field_cd, internal_note, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:01:15 Duration: 6s458ms
16 6s240ms 6s459ms 6s336ms 5 31s683ms select ii.cd, count(ii.id) cnt from ( select ot.cd, tl.term_id id from object_type ot inner join term_label tl on ot.id = tl.object_type_id where tl.nm_fts @@ to_tsquery(?, ?) union select ?, r.id from reference r where r.title_abstract_fts @@ to_tsquery(?, ?) or r.id in ( select rpr.reference_id from reference_party_role rpr inner join reference_party rp on rpr.reference_party_id = rp.id where (substr(get_reference_party_nm_sort (rp.required_nm), ?, ?) like ?)) union select ot.cd, l.object_id from db_link l inner join object_type ot on l.object_type_id = ot.id where l.type_cd = ? and (upper(l.acc_txt) like ?)) ii group by ii.cd;Times Reported Time consuming queries #16
Day Hour Count Duration Avg duration Jun 02 07 1 6s289ms 6s289ms 10 4 25s393ms 6s348ms [ User: pubeu - Total duration: 18s838ms - Times executed: 3 ]
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:34 Duration: 6s459ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:34 Duration: 6s385ms Bind query: yes
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SELECT /* BasicCountsDAO gen */ ii.cd, COUNT(ii.id) cnt FROM ( SELECT ot.cd, tl.term_id id FROM object_type ot INNER JOIN term_label tl ON ot.id = tl.object_type_id WHERE tl.nm_fts @@ to_tsquery('common.english_nostops', 'CTD_GENES_DISEASES.TSV.GZ') UNION SELECT 'reference', r.id FROM reference r WHERE r.title_abstract_fts @@ to_tsquery('pg_catalog.english', 'CTD_GENES_DISEASES.TSV.GZ') OR r.id IN ( SELECT rpr.reference_id FROM reference_party_role rpr INNER JOIN reference_party rp ON rpr.reference_party_id = rp.id WHERE (SUBSTR(get_reference_party_nm_sort (rp.required_nm), 1, 128) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) UNION SELECT ot.cd, l.object_id FROM db_link l INNER JOIN object_type ot on l.object_type_id = ot.id WHERE l.type_cd = 'A' AND (upper(l.acc_txt) LIKE 'CTD_GENES_DISEASES.TSV.GZ')) ii GROUP BY ii.cd;
Date: 2026-06-02 10:03:23 Duration: 6s307ms Database: ctdprd51 User: pubeu Bind query: yes
17 6s69ms 6s128ms 6s108ms 4 24s434ms copy edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) to stdout;Times Reported Time consuming queries #17
Day Hour Count Duration Avg duration Jun 02 06 1 6s126ms 6s126ms 10 1 6s128ms 6s128ms 14 1 6s110ms 6s110ms 18 1 6s69ms 6s69ms -
COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 10:00:38 Duration: 6s128ms
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COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 06:00:37 Duration: 6s126ms
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COPY edit.ixn_action (ixn_id, action_type_id, action_degree_type_id, position_seq, create_by, create_tm, mod_by, mod_tm) TO stdout;
Date: 2026-06-02 14:00:36 Duration: 6s110ms
18 5s633ms 5s744ms 5s688ms 2 11s377ms select ? "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casrn "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" from ( with sq as ( select distinct c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casrn, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort from term c inner join gene_chem_reference gcr on c.id = gcr.chem_id inner join term g on gcr.gene_id = g.id where (c.id = ?)) select distinct sq.chem_nm, sq.chem_acc_txt, sq.casrn, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm from sq inner join gene_go_annot gga on sq.gene_id = gga.gene_id inner join dag_node gt on gga.go_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where gga.is_not = false and (d.id = ? or d.id = ?) order by sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;Times Reported Time consuming queries #18
Day Hour Count Duration Avg duration Jun 02 05 2 11s377ms 5s688ms [ User: qaeu - Total duration: 5s744ms - Times executed: 1 ]
[ User: pubeu - Total duration: 5s633ms - Times executed: 1 ]
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1398646)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 05:43:43 Duration: 5s744ms Database: ctdprd51 User: qaeu Bind query: yes
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SELECT /* BatchChemGODAO */ 'ddt' "Input", sqi.chem_nm "ChemicalName", sqi.chem_acc_txt "ChemicalID", sqi.casRN "CasRN", sqi.gene_symbol "GeneSymbol", sqi.gene_acc_txt "GeneID", sqi.ontology_nm "Ontology", sqi.go_term_nm "GoTermName", sqi.go_acc_txt "GoTermID" FROM ( WITH sq AS ( SELECT DISTINCT c.id chem_id, c.nm chem_nm, c.acc_txt chem_acc_txt, c.secondary_nm casRN, c.nm_sort chem_nm_sort, gcr.gene_id, g.nm gene_symbol, g.acc_txt gene_acc_txt, g.nm_sort gene_symbol_sort FROM term c INNER JOIN gene_chem_reference gcr ON c.id = gcr.chem_id INNER JOIN term g ON gcr.gene_id = g.id WHERE (c.id = 1398646)) SELECT DISTINCT sq.chem_nm, sq.chem_acc_txt, sq.casRN, sq.gene_symbol, sq.gene_acc_txt, gt.nm go_term_nm, gt.acc_txt go_acc_txt, sq.chem_nm_sort, sq.gene_symbol_sort, gt.nm_sort, d.nm ontology_nm FROM sq INNER JOIN gene_go_annot gga ON sq.gene_id = gga.gene_id INNER JOIN dag_node gt ON gga.go_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE gga.is_not = false AND (d.id = 5 OR d.id = 4) ORDER BY sq.chem_nm_sort, sq.gene_symbol_sort, d.nm, gt.nm_sort) sqi;
Date: 2026-06-02 05:48:49 Duration: 5s633ms Database: ctdprd51 User: pubeu Bind query: yes
19 5s35ms 6s270ms 5s652ms 2 11s305ms select coalesce(st.alt_nm, t.nm) slimtermnm, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.curated_reference_qty > ?) curatedcount, ( select count(*) from slim_term_mapping stm inner join chem_disease cd on cd.disease_id = stm.mapped_term_id where cd.chem_id in ( select p.descendant_object_id from dag_path p where p.ancestor_object_id = ?) and stm.slim_term_id = st.slim_term_id and cd.indirect_gene_qty > ?) inferredcount from slim_term st inner join term t on st.slim_term_id = t.id where st.slim_id = ? order by ?;Times Reported Time consuming queries #19
Day Hour Count Duration Avg duration Jun 02 04 1 6s270ms 6s270ms 22 1 5s35ms 5s35ms [ User: pubeu - Total duration: 11s305ms - Times executed: 2 ]
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1525660') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1525660') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-06-02 04:28:35 Duration: 6s270ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemDiseasesBySlimDAO */ COALESCE(st.alt_nm, t.nm) slimTermNm, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1442013') AND stm.slim_term_id = st.slim_term_id AND cd.curated_reference_qty > 0) curatedCount, ( SELECT COUNT(*) FROM slim_term_mapping stm INNER JOIN chem_disease cd ON cd.disease_id = stm.mapped_term_id WHERE cd.chem_id IN ( SELECT p.descendant_object_id FROM dag_path p WHERE p.ancestor_object_id = '1442013') AND stm.slim_term_id = st.slim_term_id AND cd.indirect_gene_qty > 0) inferredCount FROM slim_term st INNER JOIN term t ON st.slim_term_id = t.id WHERE st.slim_id = 1 ORDER BY 1;
Date: 2026-06-02 22:18:25 Duration: 5s35ms Database: ctdprd51 User: pubeu Bind query: yes
20 5s157ms 6s142ms 5s575ms 10 55s754ms select d.abbr dagabbr, d.nm dagnm, gt.level_min_no daglevelmin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pvalcorrected, te.raw_p_val pvalraw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, count(*) over () fullrowcount from term_enrichment te inner join dag_node gt on te.enriched_term_id = gt.object_id inner join dag d on gt.dag_id = d.id where te.term_id = ? and te.enriched_object_type_id = ? order by te.corrected_p_val, d.abbr, gt.nm_sort limit ?;Times Reported Time consuming queries #20
Day Hour Count Duration Avg duration Jun 02 11 5 27s784ms 5s556ms 16 5 27s970ms 5s594ms [ User: pubeu - Total duration: 39s453ms - Times executed: 7 ]
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1458788' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 16:12:50 Duration: 6s142ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1442137' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 11:58:58 Duration: 5s893ms Database: ctdprd51 User: pubeu Bind query: yes
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SELECT /* ChemGODAO */ d.abbr dagAbbr, d.nm dagNm, gt.level_min_no dagLevelMin, gt.nm gonm, gt.nm_html gonmhtml, gt.acc_txt goacc, gt.object_id goid, te.corrected_p_val pValCorrected, te.raw_p_val pValRaw, te.target_match_qty targetmatchqty, te.target_total_qty targettotalqty, te.background_match_qty backgroundmatchqty, te.background_total_qty backgroundtotalqty, COUNT(*) OVER () fullRowCount FROM term_enrichment te INNER JOIN dag_node gt ON te.enriched_term_id = gt.object_id INNER JOIN dag d ON gt.dag_id = d.id WHERE te.term_id = '1442137' AND te.enriched_object_type_id = 5 ORDER BY te.corrected_p_val, d.abbr, gt.nm_sort LIMIT 50;
Date: 2026-06-02 11:59:04 Duration: 5s661ms Bind query: yes
Time consuming prepare
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
Time consuming bind
Rank Total duration Times executed Min duration Max duration Avg duration Query NO DATASET
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Events
Log levels
Key values
- 8,603 Event entries
- (EVENTLOG entries are formaly LOG level entries that are not queries)
Events distribution (except queries)
Key values
- 0 PANIC entries
- 0 FATAL entries
- 7 ERROR entries
- 0 WARNING entries
- 1 EVENTLOG entries
Most Frequent Errors/Events
Key values
- 4 Max number of times the same event was reported
- 8 Total events found
Rank Times reported Error 1 4 ERROR: syntax error at or near "..."
Times Reported Most Frequent Error / Event #1
Day Hour Count Jun 02 08 1 10 3 - ERROR: syntax error at or near ")" at character 4809
- ERROR: syntax error at or near "select" at character 1859
- ERROR: syntax error at or near "select" at character 1858
Statement: select distinct e.reference_acc_txt as "Reference", pref.abbr_authors_txt as "Author", referenceExp.author_summary as "AuthorSummary", (Select STRING_AGG( distinct eventproject.project_nm, '|')) as "AssociatedStudyTitles", eevent.collection_start_yr as "EnrollmentStartYear", eevent.collection_end_yr as "EnrollmentEndYear", (Select STRING_AGG( distinct studyFactor.nm, '|')) as "StudyFactors", (Select STRING_AGG(distinct stressorSrcType.nm, '|')) as "StressorSourceCategory", stressor.chem_term_nm as "ExposureStressorName", stressor.src_details as "StressorSourceDetails", stressor.sample_qty as "NumberOfStressorSamples", stressor.note as "StressorNotes", ereceptor.qty as "NumberOfReceptors", ereceptor.description as "Receptors", ereceptor.term_nm as "ReceptorDescription", ereceptor.term_acc_txt as "ReceptorID", ereceptor.note as "ReceptorNotes", (Select STRING_AGG(distinct COALESCE( COALESCE(NULLIF(CAST(receptorTobaccoUse.pct as int),0)) || '% ' || tobaccoUse.nm, COALESCE(COALESCE(NULLIF(CAST(receptorTobaccoUse.pct as int),0)) || '% ' , tobaccoUse.nm)), '|')) as "SmokingStatus", ereceptor.age || ' ' || age_uom.nm as "Age", age_qualifier.nm as "AgeQualifier", (Select STRING_AGG(distinct COALESCE( COALESCE(NULLIF(CAST(pct as int),0)) || '% ' || gender.nm, COALESCE(COALESCE(NULLIF(CAST(pct as int),0)) || '% ' , gender.nm)), '|') from exp_receptor_gender expgender left outer join gender on expgender.gender_id=gender.id where exp_receptor_id = ereceptor.id ) as "Sex", (Select STRING_AGG(distinct COALESCE( COALESCE(NULLIF(CAST(receptorRace.pct as int),0)) || '% ' || race.nm, COALESCE(COALESCE(NULLIF(CAST(receptorRace.pct as int),0)) || '% ' , race.nm)), '|')) as "Race", (Select STRING_AGG( distinct eventAssayMethod.nm, '|')) as "Methods" , eevent.detection_limit as "DetectionLimit", eevent.detection_limit_uom as "DetectionLimitUnitsOfMeasurement", eevent.detection_freq as "DetectionFrequency", emedium.nm as "Medium", eevent.exp_marker_term_nm as "ExposureMarker", eevent.exp_marker_lvl as "MarkerLevel", eevent.assay_uom as "MarkerUnitsOfMeasurement", eevent.assay_measurement_stat as "MarkerMeasurementStatistic", eevent.assay_note as "AssayNotes", (Select STRING_AGG( distinct country.nm, '|')) as "StudyCountries", (Select STRING_AGG( distinct eventLocation.geographic_region_nm, '|')) as "StateOrProvince", (Select STRING_AGG( distinct eventLocation.locality_txt, '|')) as "CityTownRegionOrArea", eevent.note as "ExposureEventNotes", eiot.description as "OutcomeRelationship", outcome.disease_term_nm as "DiseaseName", outcome.phenotype_action_degree_type_nm as "PhenotypeActionDegreeType", outcome.phenotype_term_nm as "PhenotypeName", (Select STRING_AGG( distinct expAnatomy.anatomy_term_nm, '|')) as "Anatomy", outcome.note as "ExposureOutcomeNotes" from exposure e left outer join reference pref on pref.acc_txt = e.reference_acc_txt left outer join reference_exp referenceExp on referenceExp.reference_acc_txt = e.reference_acc_txt left outer join exp_study_factor expStudyFactor on referenceExp.id = expStudyFactor.reference_exp_id left outer join study_factor studyFactor on studyFactor.id = expStudyFactor.study_factor_id left outer join exp_event_project eventproject on eventproject.exp_event_id = e.exp_event_id inner join exp_stressor stressor on e.exp_stressor_id = stressor.id left outer join exp_receptor ereceptor on e.exp_receptor_id = ereceptor.id left outer join age_uom age_uom on ereceptor.age_uom_id = age_uom.id left outer join age_qualifier age_qualifier on ereceptor.age_qualifier_id = age_qualifier.id left outer join exp_event eevent on e.exp_event_id = eevent.id left outer join medium emedium on eevent.medium_id = emedium.id left outer join exp_stressor_stressor_src esss on stressor.id = esss.exp_stressor_id left outer join exp_stressor_src_type stressorSrcType on esss.exp_stressor_src_type_id = stressorSrcType.id left outer join exp_receptor_tobacco_use receptorTobaccoUse on ereceptor.id = receptorTobaccoUse.exp_receptor_id left outer join tobacco_use tobaccoUse on receptorTobaccoUse.tobacco_use_id = tobaccoUse.id left outer join exp_receptor_race receptorRace on ereceptor.id = receptorRace.exp_receptor_id left outer join race race on receptorRace.race_id = race.id left outer join exp_event_location eventLocation on eevent.id = eventLocation.exp_event_id left outer join country on eventLocation.country_id = country.id left outer join exp_outcome outcome on e.exp_outcome_id = outcome.id left outer join exp_outcome_ixn_type eiot on outcome.exp_outcome_ixn_type_id = eiot.id left outer join exp_anatomy expAnatomy on outcome.id = expAnatomy.exp_outcome_id left outer join exp_event_assay_method eventAssayMethod on eevent.id = eventAssayMethod.exp_event_id where stressor.chem_acc_txt in (select acc_txt from term where id in )) or eevent.exp_marker_acc_txt in (select acc_txt from term where id in )) group by "Reference", "Author", "AuthorSummary", "EnrollmentStartYear", "EnrollmentEndYear", "ExposureStressorName", "StressorSourceDetails", "NumberOfStressorSamples", "StressorNotes", "NumberOfReceptors", "Receptors", "ReceptorDescription", "ReceptorID", "ReceptorNotes", "Age", "AgeQualifier", "DetectionLimit", "DetectionLimitUnitsOfMeasurement", "DetectionFrequency", "Medium", "ExposureMarker", "MarkerLevel", "MarkerUnitsOfMeasurement", "MarkerMeasurementStatistic", "AssayNotes", "ExposureEventNotes", "OutcomeRelationship", "DiseaseName", "PhenotypeActionDegreeType", "PhenotypeName", "ExposureOutcomeNotes", ereceptor.id, eventLocation.exp_event_id ;
Date: 2026-06-02 08:35:47 Database: ctdprd51 Application: User: pubeu Remote:
Statement: select DISTINCT phenotypeTerm.nm AS goNm ,phenotypeTerm.nm_html AS goNmHtml ,phenotypeTerm.acc_txt AS goAcc ,diseaseTerm.nm AS diseaseNm ,diseaseTerm.nm_html AS diseaseNmHtml ,diseaseTerm.acc_txt AS diseaseAcc ,diseaseTerm.acc_db_cd AS diseaseAccDbCd ,chemTerm.nm AS chemNm ,chemTerm.nm_html AS chemNmHtml ,chemTerm.acc_txt AS chemAcc ,geneTerm.nm AS geneSymbol ,geneTerm.nm_html AS geneSymbolHtml ,geneTerm.acc_txt AS geneAcc ,t.reference_score AS referenceScore ,COUNT(*) OVER() fullRowCount from TETRAMER t ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM geneTerm ,TERM chemTerm where disease_id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper( baseTerm.nm ) LIKE 'ALZHEIMER DISEASE' ) ) ) and t.phenotype_id = phenotypeTerm.id and t.disease_id = diseaseTerm.id and t.chem_id = chemTerm.id and t.gene_id = geneTerm.id order by t.reference_score desc, chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm LIMIT 50 -- 9683 AND EXISTS ( SELECT 1 from chem_disease_reference cdr ,chem_disease_reference_axn cdra where cdr.id = cdra.chem_disease_reference_id AND cdr.source_cd = 'C' AND chemTerm.id = cdr.chem_id AND diseaseTerm.id = cdr.disease_id and cdra.action_type_cd = 'm' ) select DISTINCT phenotypeTerm.nm AS goNm ,phenotypeTerm.nm_html AS goNmHtml ,phenotypeTerm.acc_txt AS goAcc ,diseaseTerm.nm AS diseaseNm ,diseaseTerm.nm_html AS diseaseNmHtml ,diseaseTerm.acc_txt AS diseaseAcc ,diseaseTerm.acc_db_cd AS diseaseAccDbCd ,chemTerm.nm AS chemNm ,chemTerm.nm_html AS chemNmHtml ,chemTerm.acc_txt AS chemAcc ,geneTerm.nm AS geneSymbol ,geneTerm.nm_html AS geneSymbolHtml ,geneTerm.acc_txt AS geneAcc ,t.reference_score AS referenceScore ,COUNT(*) OVER() fullRowCount from TETRAMER t ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM geneTerm ,TERM chemTerm where chem_id = ANY ( ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper( baseTerm.nm ) LIKE 'ZINC' ) ) ) and gene_id = ANY ( ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper( baseTerm.nm ) LIKE 'AHR' ) ) and t.phenotype_id = phenotypeTerm.id and t.disease_id = diseaseTerm.id and t.chem_id = chemTerm.id and t.gene_id = geneTerm.id order by t.reference_score desc, chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm LIMIT 50
Date: 2026-06-02 10:41:50 Database: ctdprd51 Application: pgAdmin 4 - CONN:5610378 User: pub1 Remote:
Statement: select DISTINCT phenotypeTerm.nm AS goNm ,phenotypeTerm.nm_html AS goNmHtml ,phenotypeTerm.acc_txt AS goAcc ,diseaseTerm.nm AS diseaseNm ,diseaseTerm.nm_html AS diseaseNmHtml ,diseaseTerm.acc_txt AS diseaseAcc ,diseaseTerm.acc_db_cd AS diseaseAccDbCd ,chemTerm.nm AS chemNm ,chemTerm.nm_html AS chemNmHtml ,chemTerm.acc_txt AS chemAcc ,geneTerm.nm AS geneSymbol ,geneTerm.nm_html AS geneSymbolHtml ,geneTerm.acc_txt AS geneAcc ,t.reference_score AS referenceScore ,COUNT(*) OVER() fullRowCount from TETRAMER t ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM geneTerm ,TERM chemTerm where disease_id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper( baseTerm.nm ) LIKE 'ALZHEIMER DISEASE' ) ) ) and t.phenotype_id = phenotypeTerm.id and t.disease_id = diseaseTerm.id and t.chem_id = chemTerm.id and t.gene_id = geneTerm.id order by t.reference_score desc, chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm -- 9683 AND EXISTS ( SELECT 1 from chem_disease_reference cdr ,chem_disease_reference_axn cdra where cdr.id = cdra.chem_disease_reference_id AND cdr.source_cd = 'C' AND chemTerm.id = cdr.chem_id AND diseaseTerm.id = cdr.disease_id and cdra.action_type_cd = 'm' ) LIMIT 50 select DISTINCT phenotypeTerm.nm AS goNm ,phenotypeTerm.nm_html AS goNmHtml ,phenotypeTerm.acc_txt AS goAcc ,diseaseTerm.nm AS diseaseNm ,diseaseTerm.nm_html AS diseaseNmHtml ,diseaseTerm.acc_txt AS diseaseAcc ,diseaseTerm.acc_db_cd AS diseaseAccDbCd ,chemTerm.nm AS chemNm ,chemTerm.nm_html AS chemNmHtml ,chemTerm.acc_txt AS chemAcc ,geneTerm.nm AS geneSymbol ,geneTerm.nm_html AS geneSymbolHtml ,geneTerm.acc_txt AS geneAcc ,t.reference_score AS referenceScore ,COUNT(*) OVER() fullRowCount from TETRAMER t ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM geneTerm ,TERM chemTerm where chem_id = ANY ( ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper( baseTerm.nm ) LIKE 'ZINC' ) ) ) and gene_id = ANY ( ARRAY ( select baseTerm.id from term baseTerm WHERE baseTerm.object_type_id = 4 and upper( baseTerm.nm ) LIKE 'AHR' ) ) and t.phenotype_id = phenotypeTerm.id and t.disease_id = diseaseTerm.id and t.chem_id = chemTerm.id and t.gene_id = geneTerm.id order by t.reference_score desc, chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm LIMIT 50
Date: 2026-06-02 10:42:32
2 2 ERROR: value too long for type character varying(...)
Times Reported Most Frequent Error / Event #2
Day Hour Count Jun 02 06 1 21 1 - ERROR: value too long for type character varying(256)
Statement: INSERT /* AdvancedQueryDAO.logQuery */ INTO pubc.log_query (type_cd ,query_tm ,submission_qty ,session_id ,server_nm ,node_nm ,remote_addr ,http_user_agent ,results_qty ,execution_ms ,gene_txt ,taxon_txt ,chem_txt ,acc_txt ,party_nm_txt ,gene_query_type ,taxon_query_type ,chem_query_type ,party_query_type ,action_type_txt ,pathway_txt ,pathway_query_type ,gene_form_type_txt ,action_degree_type_txt,go_txt ,go_query_type ,disease_txt ,disease_query_type ,gd_assn_type ,from_yr ,through_yr ,title_abstract_txt ,review_status ) VALUES ($1 ,CURRENT_TIMESTAMP ,1 ,$2 ,$3 ,NULLIF($4,'') ,SUBSTR($5,1,128) ,NULLIF(SUBSTR($6,1,256),'') ,$7 ,NULLIF($8,-1) ,NULLIF($9,'') ,NULLIF($10,'') ,NULLIF($11,'') ,NULLIF(SUBSTR($12,1,4000),'') ,NULLIF($13,'') ,NULLIF($14,'') ,NULLIF($15,'') ,NULLIF($16,'') ,NULLIF($17,'') ,NULLIF(SUBSTR($18,1,4000),'') ,NULLIF(SUBSTR($19,1,4000),'') ,NULLIF(SUBSTR($20,1,4000),'') ,NULLIF(SUBSTR($21,1,4000),'') ,NULLIF(SUBSTR($22,1,4000),'') ,NULLIF($23,'') ,NULLIF($24,'') ,NULLIF(SUBSTR($25,1,4000),'') ,NULLIF($26,'') ,NULLIF($27,'') ,NULLIF($28,0) ,NULLIF($29,0) ,NULLIF($30,'') ,NULLIF($31,'') ) RETURNING id
Date: 2026-06-02 06:16:05 Database: ctdprd51 Application: User: pubeu Remote:
3 1 LOG: could not receive data from client: Connection timed out
Times Reported Most Frequent Error / Event #3
Day Hour Count Jun 02 19 1 4 1 ERROR: argument of AND must be type boolean, not type character varying
Times Reported Most Frequent Error / Event #4
Day Hour Count Jun 02 10 1 - ERROR: argument of AND must be type boolean, not type character varying at character 1519
Statement: select DISTINCT phenotypeTerm.nm AS goNm ,phenotypeTerm.nm_html AS goNmHtml ,phenotypeTerm.acc_txt AS goAcc ,diseaseTerm.nm AS diseaseNm ,diseaseTerm.nm_html AS diseaseNmHtml ,diseaseTerm.acc_txt AS diseaseAcc ,diseaseTerm.acc_db_cd AS diseaseAccDbCd ,chemTerm.nm AS chemNm ,chemTerm.nm_html AS chemNmHtml ,chemTerm.acc_txt AS chemAcc ,geneTerm.nm AS geneSymbol ,geneTerm.nm_html AS geneSymbolHtml ,geneTerm.acc_txt AS geneAcc ,t.reference_score AS referenceScore ,COUNT(*) OVER() fullRowCount from TETRAMER t ,TERM phenotypeTerm ,TERM diseaseTerm ,TERM geneTerm ,TERM chemTerm where disease_id = ANY (ARRAY ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 3 and upper( baseTerm.nm ) LIKE 'ALZHEIMER DISEASE' ) ) ) and t.phenotype_id = phenotypeTerm.id and t.disease_id = diseaseTerm.id and t.chem_id = chemTerm.id and t.gene_id = geneTerm.id order by t.reference_score desc, chemTerm.nm, geneTerm.nm, phenotypeTerm.nm, diseaseTerm.nm -- 9683 AND EXISTS ( SELECT 1 from chem_disease_reference cdr ,chem_disease_reference_axn cdra where cdr.id = cdra.chem_disease_reference_id AND cdr.source_cd = 'C' AND chemTerm.id = cdr.chem_id AND diseaseTerm.id = cdr.disease_id and cdra.action_type_cd = 'm' ) LIMIT 50
Date: 2026-06-02 10:42:44