/* * Run daily to prune LOG_QUERY, archive old queries to LOG_QUERY_ARCHIVE * and vacuum/analyze the tables. * * $Id: archive_query_logs.sql 10832 2012-03-19 15:27:11Z mcr $ */ SELECT maint_query_logs_archive ();

[ Date: 2026-09-24 00:09:28 - Database: ctdprd51 - User: pubc - Application: psql ]

COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 18:06:58 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 10:06:55 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 06:06:54 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

COPY pubc.log_query_archive (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, gene_set_txt, molecule_type_txt, volume_txt, first_page_txt, journal_query_type, journal_txt, is_review, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 14:06:54 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

SELECT /* AdvancedGeneQueryDAO.getData */ g.id geneId, g.acc_txt acc, g.nm nm, g.nm nmHtml, g.secondary_nm secondaryNm, g.has_chems hasChems, g.has_diseases hasDiseases, g.has_exposures hasExposures, g.has_phenotypes hasPhenotypes, COUNT(*) OVER () fullRowCount FROM term g WHERE g.id IN (( SELECT /* IQH.getMasterGoWhereEquals.Gene */ ai.gene_id FROM dag_path pi INNER JOIN gene_go_annot ai ON pi.descendant_object_id = ai.go_term_id INNER JOIN term_label li ON li.term_id = pi.ancestor_object_id WHERE UPPER(li.nm) LIKE 'APOPTOSIS' AND li.object_type_id = 5)) ORDER BY g.nm_sort, g.id LIMIT 50;

[ Date: 2026-09-24 21:36:54 - Database: ctdprd51 - User: pubeu - Bind query: yes ]

COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 10:07:20 ]

COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 14:07:19 ]

COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 18:07:22 ]

COPY pubc.log_query_bots (id, type_cd, query_tm, submission_qty, session_id, remote_addr, http_user_agent, server_nm, node_nm, results_qty, execution_ms, basic_query_type, basic_query_txt, gene_query_type, gene_txt, gene_form_type_txt, taxon_query_type, taxon_txt, chem_query_type, chem_txt, party_query_type, party_nm_txt, acc_txt, go_query_type, go_txt, disease_query_type, disease_txt, action_type_txt, action_degree_type_txt, from_yr, through_yr, title_abstract_txt, has_marray, pathway_query_type, pathway_txt, dag_txt, results_format_txt, batch_input_type_txt, gd_assn_type, p_val, p_val_type, input_term_qty, review_status) TO stdout;

[ Date: 2026-09-24 06:07:19 ]

SELECT /* AdvancedIxnQueryDAO.getData */ g.nm geneSymbol, g.id geneId, g.acc_txt geneAcc, g.acc_db_cd geneAccDbCd, c.nm chemNm, c.nm_html chemNmhtml, c.acc_txt chemAcc, c.secondary_nm casRN, c.id chemId, i.id ixnId, i.ixn_prose_txt ixnProse, i.ixn_prose_html ixnProseHtml, i.actions_txt ixnActions, COUNT(DISTINCT gcr.reference_id) refCount, COUNT(DISTINCT gcr.taxon_id) taxonCount, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(*) OVER () fullRowCount FROM gene_chem_reference gcr INNER JOIN ixn i ON gcr.ixn_id = i.id INNER JOIN term g ON gcr.gene_id = g.id INNER JOIN term c ON gcr.chem_id = c.id INNER JOIN reference r on gcr.reference_id = r.id LEFT OUTER JOIN term taxonTerm on gcr.taxon_id = taxonTerm.id WHERE /* CIQH.getIxnWhereCore */ gcr.gene_id = ANY (ARRAY (( SELECT /* IQH.getMasterPathwayWhereEquals.Name */ tp.term_id FROM term_pathway tp WHERE UPPER(tp.pathway_nm) LIKE 'METABOLISM' AND tp.object_type_id = 4))) AND gcr.id IN ( SELECT gcra.gene_chem_reference_id FROM gene_chem_reference_axn gcra WHERE (gcra.action_degree_type_nm = 'increases')) GROUP BY g.nm, g.nm_sort, g.acc_txt, g.acc_db_cd, g.id, c.nm, c.nm_html, c.nm_sort, c.acc_txt, c.secondary_nm, c.id, i.ixn_prose_txt, i.ixn_prose_html, i.sort_txt, i.actions_txt, i.id ORDER BY g.nm_sort, c.nm_sort, i.sort_txt LIMIT 50;

[ Date: 2026-09-24 21:37:45 - Database: ctdprd51 - User: pubeu - Bind query: yes ]

COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

[ Date: 2026-09-24 18:00:23 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

[ Date: 2026-09-24 06:00:22 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

[ Date: 2026-09-24 10:00:22 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

COPY edit.db_link (object_id, object_type_id, acc_txt, db_id, type_cd, is_primary, create_by, create_tm, mod_by, mod_tm) TO stdout;

[ Date: 2026-09-24 14:00:22 - Database: ctdprd51 - User: postgres - Application: pg_dump ]

WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY chem_conc_id ), reference_groups AS ( SELECT cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) AS anatomy_ids, string_agg(DISTINCT r.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc.reference_id) AS referenceCount FROM chem_conc cc LEFT JOIN anatomy a ON a.chem_conc_id = cc.id LEFT JOIN reference r ON r.id = cc.reference_id GROUP BY cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) ), deduplicated_cc AS ( SELECT cc.*, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) AS anatomy_ids, a.anatomyTerms, ROW_NUMBER() OVER (PARTITION BY cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) ORDER BY cc.id) AS rn FROM chem_conc cc LEFT JOIN anatomy a ON a.chem_conc_id = cc.id WHERE EXISTS ( SELECT 1 FROM chem_conc cc_ref LEFT JOIN anatomy a_ref ON a_ref.chem_conc_id = cc_ref.id WHERE cc_ref.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc_ref.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc_ref.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc_ref.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc_ref.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc_ref.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc_ref.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc_ref.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd AND COALESCE(a_ref.anatomy_ids, ARRAY[]::integer[]) = COALESCE(a.anatomy_ids, ARRAY[]::integer[]))) SELECT /* ChemConcentrationDao */ cc.chem_id AS chem_id, t.nm AS chem, t.nm_html AS chemNmHtml, t.acc_txt AS chemAcc, t.secondary_nm AS casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm AS concentration, cc.ixn_qualifier_nm AS vivoVitro, cc.chem_conc_exp_route_nm AS expRoute, cc.taxon_nm_html AS organism, cc.anatomyTerms AS anatomyTerms, cc.anatomyTerms AS anatomyTermsSort, cc.action_type_cd AS directEvidence, cc.action_type_cd AS directEvidenceSort, d.nm AS diseasenm, d.acc_txt AS diseaseacc, d.acc_db_cd AS diseaseaccdbcd, d.id AS diseaseid, tx.nm AS taxonnm, tx.secondary_nm AS taxoncomnm, tx.id AS taxonid, tx.acc_txt AS taxonacc, rg.refAcc, rg.referenceCount, COUNT(*) OVER () fullRowCount FROM deduplicated_cc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN reference_groups rg ON rg.chem_id IS NOT DISTINCT FROM cc.chem_id AND rg.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND rg.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND rg.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND rg.disease_id IS NOT DISTINCT FROM cc.disease_id AND rg.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND rg.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND rg.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd AND rg.anatomy_ids = cc.anatomy_ids WHERE cc.rn = 1 AND t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1447004') ORDER BY organism LIMIT 50;

[ Date: 2026-09-24 02:07:47 - Database: ctdprd51 - User: pubeu - Bind query: yes ]

WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY chem_conc_id ), reference_groups AS ( SELECT cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) AS anatomy_ids, string_agg(DISTINCT r.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc.reference_id) AS referenceCount FROM chem_conc cc LEFT JOIN anatomy a ON a.chem_conc_id = cc.id LEFT JOIN reference r ON r.id = cc.reference_id GROUP BY cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) ), deduplicated_cc AS ( SELECT cc.*, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) AS anatomy_ids, a.anatomyTerms, ROW_NUMBER() OVER (PARTITION BY cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) ORDER BY cc.id) AS rn FROM chem_conc cc LEFT JOIN anatomy a ON a.chem_conc_id = cc.id WHERE EXISTS ( SELECT 1 FROM chem_conc cc_ref LEFT JOIN anatomy a_ref ON a_ref.chem_conc_id = cc_ref.id WHERE cc_ref.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc_ref.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc_ref.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc_ref.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc_ref.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc_ref.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc_ref.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc_ref.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd AND COALESCE(a_ref.anatomy_ids, ARRAY[]::integer[]) = COALESCE(a.anatomy_ids, ARRAY[]::integer[]))) SELECT /* ChemConcentrationDao */ cc.chem_id AS chem_id, t.nm AS chem, t.nm_html AS chemNmHtml, t.acc_txt AS chemAcc, t.secondary_nm AS casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm AS concentration, cc.ixn_qualifier_nm AS vivoVitro, cc.chem_conc_exp_route_nm AS expRoute, cc.taxon_nm_html AS organism, cc.anatomyTerms AS anatomyTerms, cc.anatomyTerms AS anatomyTermsSort, cc.action_type_cd AS directEvidence, cc.action_type_cd AS directEvidenceSort, d.nm AS diseasenm, d.acc_txt AS diseaseacc, d.acc_db_cd AS diseaseaccdbcd, d.id AS diseaseid, tx.nm AS taxonnm, tx.secondary_nm AS taxoncomnm, tx.id AS taxonid, tx.acc_txt AS taxonacc, rg.refAcc, rg.referenceCount, COUNT(*) OVER () fullRowCount FROM deduplicated_cc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN reference_groups rg ON rg.chem_id IS NOT DISTINCT FROM cc.chem_id AND rg.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND rg.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND rg.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND rg.disease_id IS NOT DISTINCT FROM cc.disease_id AND rg.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND rg.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND rg.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd AND rg.anatomy_ids = cc.anatomy_ids WHERE cc.rn = 1 AND t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1447004') ORDER BY organism LIMIT 50;

[ Date: 2026-09-24 02:07:31 - Database: ctdprd51 - User: pubeu - Bind query: yes ]

WITH anatomy AS ( SELECT chem_conc_id, array_agg(anatomy_id ORDER BY anatomy_id) AS anatomy_ids, string_agg(DISTINCT anatomy_nm_html || '^' || anatomy_acc_txt || '^' || position_seq || '^' || anatomy_acc_db_id || '^' || anatomy_nm, '|') AS anatomyTerms FROM chem_conc_anatomy cca GROUP BY chem_conc_id ), reference_groups AS ( SELECT cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) AS anatomy_ids, string_agg(DISTINCT r.acc_txt, '|') AS refAcc, COUNT(DISTINCT cc.reference_id) AS referenceCount FROM chem_conc cc LEFT JOIN anatomy a ON a.chem_conc_id = cc.id LEFT JOIN reference r ON r.id = cc.reference_id GROUP BY cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) ), deduplicated_cc AS ( SELECT cc.*, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) AS anatomy_ids, a.anatomyTerms, ROW_NUMBER() OVER (PARTITION BY cc.chem_id, cc.chem_conc, cc.chem_conc_uom_nm, cc.taxon_id, cc.disease_id, cc.chem_conc_exp_route_nm, cc.ixn_qualifier_nm, cc.action_type_cd, COALESCE(a.anatomy_ids, ARRAY[]::integer[]) ORDER BY cc.id) AS rn FROM chem_conc cc LEFT JOIN anatomy a ON a.chem_conc_id = cc.id WHERE EXISTS ( SELECT 1 FROM chem_conc cc_ref LEFT JOIN anatomy a_ref ON a_ref.chem_conc_id = cc_ref.id WHERE cc_ref.chem_id IS NOT DISTINCT FROM cc.chem_id AND cc_ref.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND cc_ref.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND cc_ref.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND cc_ref.disease_id IS NOT DISTINCT FROM cc.disease_id AND cc_ref.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND cc_ref.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND cc_ref.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd AND COALESCE(a_ref.anatomy_ids, ARRAY[]::integer[]) = COALESCE(a.anatomy_ids, ARRAY[]::integer[]))) SELECT /* ChemConcentrationDao */ cc.chem_id AS chem_id, t.nm AS chem, t.nm_html AS chemNmHtml, t.acc_txt AS chemAcc, t.secondary_nm AS casRN, cc.chem_conc || ' ' || cc.chem_conc_uom_nm AS concentration, cc.ixn_qualifier_nm AS vivoVitro, cc.chem_conc_exp_route_nm AS expRoute, cc.taxon_nm_html AS organism, cc.anatomyTerms AS anatomyTerms, cc.anatomyTerms AS anatomyTermsSort, cc.action_type_cd AS directEvidence, cc.action_type_cd AS directEvidenceSort, d.nm AS diseasenm, d.acc_txt AS diseaseacc, d.acc_db_cd AS diseaseaccdbcd, d.id AS diseaseid, tx.nm AS taxonnm, tx.secondary_nm AS taxoncomnm, tx.id AS taxonid, tx.acc_txt AS taxonacc, rg.refAcc, rg.referenceCount, COUNT(*) OVER () fullRowCount FROM deduplicated_cc cc INNER JOIN term t ON cc.chem_id = t.id INNER JOIN term tx ON cc.taxon_id = tx.id LEFT JOIN term d ON cc.disease_id = d.id INNER JOIN reference_groups rg ON rg.chem_id IS NOT DISTINCT FROM cc.chem_id AND rg.chem_conc IS NOT DISTINCT FROM cc.chem_conc AND rg.chem_conc_uom_nm IS NOT DISTINCT FROM cc.chem_conc_uom_nm AND rg.taxon_id IS NOT DISTINCT FROM cc.taxon_id AND rg.disease_id IS NOT DISTINCT FROM cc.disease_id AND rg.chem_conc_exp_route_nm IS NOT DISTINCT FROM cc.chem_conc_exp_route_nm AND rg.ixn_qualifier_nm IS NOT DISTINCT FROM cc.ixn_qualifier_nm AND rg.action_type_cd IS NOT DISTINCT FROM cc.action_type_cd AND rg.anatomy_ids = cc.anatomy_ids WHERE cc.rn = 1 AND t.id in ( select distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id = '1447004') ORDER BY organism LIMIT 50;

[ Date: 2026-09-24 02:07:35 - Bind query: yes ]

SELECT /* BatchDiseaseGeneAssnsDAO */ 'mesh:d009765' "Input", d.nm "DiseaseName", d.acc_db_cd || ':' || d.acc_txt "DiseaseID", g.nm "GeneSymbol", g.acc_txt "GeneID", ( SELECT STRING_AGG(stm.slim_term_nm, '|' ORDER BY stm.slim_term_nm) FROM slim_term_mapping stm WHERE stm.mapped_term_id = d.id) "DiseaseCategories", CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END "DirectEvidence", c.nm "InferenceChemicalName", gdr.network_score "InferenceScore", STRING_AGG(gdr.source_acc_txt, '|' ORDER BY gdr.source_acc_txt) "OmimIDs", STRING_AGG(DISTINCT r.acc_txt, '|') "PubMedIDs" FROM gene_disease_reference gdr INNER JOIN term g ON gdr.gene_id = g.id INNER JOIN term d ON gdr.disease_id = d.id LEFT OUTER JOIN reference r ON gdr.reference_id = r.id LEFT OUTER JOIN term c ON gdr.via_chem_id = c.id WHERE (d.id = 2196371) GROUP BY g.nm, g.acc_txt, d.nm, d.id, d.acc_txt, d.acc_db_cd, d.nm_sort, CASE WHEN gdr.via_chem_id IS NULL THEN ( SELECT STRING_AGG(a.action_type_nm, '|') FROM gene_disease_axn a WHERE a.gene_id = gdr.gene_id AND a.disease_id = gdr.disease_id) ELSE NULL END, c.nm, gdr.network_score ORDER BY d.nm_sort, g.nm, "DirectEvidence", c.nm;

[ Date: 2026-09-24 03:03:54 - Database: ctdprd51 - User: pubeu - Bind query: yes ]

select distinct /* ChemPhenotypesAssnsDAO */ associatedTerm.nm || '^' || o.cd || '^' || associatedTerm.nm_html || '^' || associatedTerm.acc_txt || '^' || associatedTerm.acc_db_cd as associatedTerm, associatedTerm.id associatedTermId, ptr.ixn_id ixnId, associatedTerm.object_type_id || '|' || associatedTerm.nm_sort associatedTermNmSort, COALESCE(associatedTerm.secondary_nm, '') casRN, phenotypeTerm.nm || '^' || 'go' || '^' || phenotypeTerm.nm_html || '^' || phenotypeTerm.acc_txt || '^' || phenotypeTerm.acc_db_cd as phenotype, phenotypeTerm.id phenotypeId, ( SELECT STRING_AGG(distinct taxonTerm.nm || '^' || 'taxon' || '^' || taxonTerm.nm_html || '^' || taxonTerm.acc_txt || '^' || taxonTerm.acc_db_cd || '^' || COALESCE(taxonTerm.secondary_nm, ''), '|')) as taxonTerms, ( SELECT STRING_AGG(distinct anatomyTerm.nm_html || '^' || anatomyTerm.acc_txt || '^' || ia.level_seq || '^' || anatomyTerm.acc_db_cd || '^' || anatomyTerm.nm, '|')) as anatomyTerms, COUNT(DISTINCT taxonTerm.nm) taxonCount, i.ixn_prose_html ixnProseHtml, i.ixn_prose_txt ixnProse, i.sort_txt ixnSort, ( SELECT STRING_AGG(distinct r.acc_txt, '|')) as references, COUNT(DISTINCT ptr.reference_id) refCount, pt.indirect_term_qty inferredCount, COUNT(*) OVER () fullRowCount from phenotype_term_reference ptr inner join phenotype_term pt on ptr.term_id = pt.term_id and ptr.phenotype_id = pt.phenotype_id inner join term associatedTerm on ptr.term_id = associatedTerm.id inner join term phenotypeTerm on ptr.phenotype_id = phenotypeTerm.id left outer join term taxonTerm on ptr.taxon_id = taxonTerm.id inner join reference r on ptr.reference_id = r.id inner join ixn i on ptr.ixn_id = i.id inner join object_type o on associatedTerm.object_type_id = o.id left outer join ixn_anatomy ia on ptr.ixn_id = ia.ixn_id left outer join term anatomyTerm on ia.anatomy_id = anatomyTerm.id where ptr.term_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 2 and upper(baseTerm.nm) LIKE 'ZINC')) and ptr.term_object_type_id = 2 and ptr.phenotype_id IN ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 5 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = 'GO:0006915' AND l.type_cd = 'A' AND l.object_type_id = 5))) and taxonTerm.id in ( select /* DBConstants.getDAGTermSQL */ distinct dp.descendant_object_id from dag_path dp WHERE dp.ancestor_object_id in ( select distinct id from term baseTerm where object_type_id = 1 and baseTerm.id in ( select object_id from db_link l where l.acc_txt = '9606' AND l.type_cd = 'A' AND l.object_type_id = 1))) and i.id in ( select ixn_id from ixn_axn where action_type_nm = 'phenotype' and action_degree_type_nm in ('increases')) group by associatedTerm, associatedTermNmSort, phenotype, casRN, ixnId, ixnProseHtml, ixnProse, ixnSort, associatedTermId, phenotypeId, inferredCount ORDER BY associatedTermNmSort asc, pt.indirect_term_qty desc LIMIT 50;